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KGV

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CE2CZdoub1.38Å1.39ÅAromatic
CE2CD2sing1.38Å1.39ÅAromatic
CZCE1sing1.38Å1.39ÅAromatic
CD2CGdoub1.38Å1.39ÅAromatic
CE1CD1doub1.38Å1.39ÅAromatic
NCAsing1.47Å1.45Å
CACsing1.51Å1.49Å
CACBsing1.53Å1.52Å
CGCD1sing1.38Å1.39ÅAromatic
CGCBsing1.51Å1.51Å
OCdoub1.21Å1.22Å
CN3'sing1.35Å1.33Å
N3'C3'sing1.46Å1.45Å
OP1Pdoub1.48Å1.51Å
C3'C4'sing1.54Å1.51Å
C3'C2'sing1.55Å1.51Å
C5'C4'sing1.53Å1.52Å
C5'O5'sing1.43Å1.42Å
C4'O4'sing1.44Å1.43Å
C2'O2'sing1.43Å1.42Å
C2'C1'sing1.55Å1.51Å
POP2sing1.61Å1.51Å
PO5'sing1.61Å1.61Å
C8N7doub1.30Å1.36ÅAromatic
C8N9sing1.36Å1.35ÅAromatic
O4'C1'sing1.44Å1.43Å
N7C5sing1.35Å1.34ÅAromatic
C1'N9sing1.47Å1.49Å
N9C4sing1.37Å1.33ÅAromatic
C5C4doub1.41Å1.47ÅAromatic
C5C6sing1.41Å1.48ÅAromatic
C4N3sing1.33Å1.35ÅAromatic
N6C6sing1.38Å1.40Å
C6N1doub1.33Å1.35ÅAromatic
N3C2doub1.32Å1.34ÅAromatic
N1C2sing1.32Å1.34ÅAromatic
POP3sing1.61Å1.56Å
C2H1sing1.08Å1.08Å
CAH2sing1.09Å1.10Å
CBH3sing1.09Å1.10Å
CBH4sing1.09Å1.10Å
CD2H5sing1.08Å1.08Å
CE2H6sing1.08Å1.08Å
CZH7sing1.08Å1.08Å
CE1H8sing1.08Å1.08Å
CD1H9sing1.08Å1.08Å
NH10sing1.01Å1.00Å
NH11sing1.01Å1.00Å
N3'H13sing0.97Å1.00Å
C3'H14sing1.09Å1.10Å
C4'H15sing1.09Å1.10Å
C5'H16sing1.09Å1.10Å
C5'H17sing1.09Å1.10Å
OP2HOP2sing0.97Å0.95Å
C2'H19sing1.09Å1.10Å
O2'H20sing0.97Å0.95Å
C1'H21sing1.09Å1.10Å
C8H22sing1.08Å1.08Å
N6H23sing0.97Å1.00Å
N6H24sing0.97Å1.00Å
OP3HOP3sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CZCE2CD2120.0°120.0°
CE2CZCE1120.2°120.0°
CZCE2H6120.0°120.0°
CE2CZH7119.9°120.0°
CE2CD2CG119.8°120.0°
CE2CD2H5120.1°120.0°
CD2CE2H6120.0°120.0°
CZCE1CD1119.6°120.0°
CE1CZH7119.9°120.0°
CZCE1H8120.2°120.0°
CD2CGCD1120.1°120.0°
CD2CGCB119.8°120.0°
CGCD2H5120.1°120.0°
CE1CD1CG120.3°120.0°
CD1CE1H8120.2°120.0°
CE1CD1H9119.8°120.0°
NCAC108.8°109.5°
NCACB110.4°109.5°
NCAH2110.7°109.4°
CANH10109.5°111.0°
CANH11109.5°111.1°
CCACB107.1°109.5°
CACO120.1°119.9°
CACN3'116.8°120.1°
CCAH2110.1°109.4°
CACBCG110.4°109.4°
CBCAH2109.8°109.5°
CACBH3109.2°109.5°
CACBH4109.2°109.5°
CD1CGCB120.2°120.0°
CGCD1H9119.9°120.0°
CGCBH3109.2°109.5°
CGCBH4109.2°109.5°
OCN3'123.1°120.0°
CN3'C3'119.4°120.0°
CN3'H13120.3°119.9°
N3'C3'C4'110.6°110.5°
N3'C3'C2'113.2°110.5°
C3'N3'H13120.3°120.0°
N3'C3'H14109.8°110.5°
OP1POP2119.5°109.5°
OP1PO5'109.1°109.5°
OP1POP3130.4°109.5°
C4'C3'C2'105.2°104.2°
C3'C4'C5'108.9°109.9°
C3'C4'O4'107.1°107.3°
C4'C3'H14108.9°110.4°
C3'C4'H15109.7°109.9°
C3'C2'O2'109.4°110.9°
C3'C2'C1'105.1°102.0°
C2'C3'H14108.9°110.6°
C3'C2'H19110.7°110.9°
C4'C5'O5'110.5°109.5°
C5'C4'O4'110.4°109.9°
C5'C4'H15109.7°110.0°
C4'C5'H16109.2°109.4°
C4'C5'H17109.2°109.5°
C5'O5'P119.2°123.0°
O5'C5'H16109.2°109.5°
O5'C5'H17109.2°109.5°
C4'O4'C1'111.5°107.0°
O4'C4'H15111.0°109.8°
O2'C2'C1'108.6°110.9°
O2'C2'H19112.1°110.9°
C2'O2'H20109.5°114.0°
C2'C1'O4'106.9°103.5°
C2'C1'N9110.0°110.6°
C1'C2'H19110.7°110.9°
C2'C1'H21110.0°110.6°
OP2PO5'107.2°109.4°
OP2POP3109.3°109.5°
POP2HOP2109.5°114.0°
O5'POP344.2°109.5°
N7C8N9111.8°110.0°
C8N7C5106.8°109.5°
N7C8H22124.1°125.0°
C8N9C1'126.1°126.3°
C8N9C4107.7°107.5°
N9C8H22124.1°125.1°
O4'C1'N9108.1°110.6°
O4'C1'H21111.3°110.8°
N7C5C4107.0°107.1°
N7C5C6135.8°134.7°
C1'N9C4126.1°126.2°
N9C1'H21110.4°110.6°
N9C4C5106.7°106.0°
N9C4N3134.5°134.9°
C4C5C6117.3°118.1°
C5C4N3118.8°119.1°
C5C6N6121.3°120.8°
C5C6N1117.7°118.5°
C4N3C2120.6°120.6°
N6C6N1121.0°120.8°
C6N6H23109.5°120.0°
C6N6H24109.5°120.0°
C6N1C2121.6°121.2°
N3C2N1124.0°122.5°
N3C2H1118.0°118.8°
N1C2H1118.0°118.8°
POP3HOP3109.5°114.0°
H3CBH4109.5°109.5°
H10NH11109.5°110.9°
H16C5'H17109.4°109.4°
H23N6H24109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CZCE2CD2H6180.0°179.9°
CE2CZCE1H7180.0°179.9°
CZCE2CD2CG0.2°0.1°
CE2CZCE1CD10.1°0.1°
CZCE2CD2H5179.8°180.0°
CE2CZCE1H8179.9°180.0°
CD2CE2CZCE10.0°0.1°
CE2CD2CGH5180.0°180.0°
CE2CD2CGCD10.4°0.1°
CE2CD2CGCB179.7°179.8°
CD2CE2CZH7180.0°180.0°
CZCE1CD1H8180.0°179.9°
CZCE1CD1CG0.3°0.1°
CE1CZCE2H6180.0°180.0°
CZCE1CD1H9179.7°179.8°
CD2CGCD1CE10.4°0.1°
CD2CGCBCA81.5°89.8°
CD2CGCD1CB179.4°179.8°
CD2CGCBH338.7°150.2°
CD2CGCBH4158.4°30.2°
CGCD2CE2H6179.8°180.0°
CD2CGCD1H9179.6°179.7°
CE1CD1CGH9180.0°179.6°
CE1CD1CGCB179.8°179.7°
CD1CE1CZH7179.9°179.9°
NCACCB119.3°120.1°
NCACH2121.5°119.9°
NCACBH2122.3°120.0°
NCACBCG66.8°65.0°
NCACO122.7°20.1°
NCACN3'58.2°160.0°
NCACBH3173.0°175.0°
NCACBH453.3°55.0°
CANH10H11120.0°124.0°
CCACBH2119.5°119.9°
CCACBCG174.9°175.0°
CACON3'179.1°179.9°
CACN3'C3'170.3°180.0°
CCACBH354.8°55.0°
CCACBH464.9°65.1°
CCANH10180.0°60.1°
CCANH1160.0°63.9°
CACN3'H139.7°0.1°
CACBCGCD199.2°90.1°
CACBCGH3120.1°120.0°
CACBCGH4120.1°120.0°
CBCACO118.1°100.0°
CBCACN3'61.1°79.9°
CACBH3H4119.6°120.0°
CBCANH1062.8°60.0°
CBCANH1157.2°176.1°
CD1CGCBH3140.7°29.9°
CD1CGCBH421.0°150.0°
CD1CGCD2H5179.6°180.0°
CGCD1CE1H8179.7°180.0°
CGCBCAH255.5°55.0°
CGCBH3H4119.6°120.0°
CBCGCD2H50.3°0.2°
CBCGCD1H90.2°0.1°
OCN3'C3'8.8°0.1°
OCCAH21.2°140.0°
OCN3'H13171.2°180.0°
CN3'C3'H13180.0°179.9°
CN3'C3'C4'80.9°154.9°
CN3'C3'C2'161.3°90.2°
N3'CCAH2179.7°40.1°
CN3'C3'H1439.4°32.4°
N3'C3'C4'C2'122.6°118.7°
N3'C3'C4'H14120.8°122.5°
N3'C3'C2'H14122.5°122.6°
N3'C3'C4'C5'102.2°119.9°
N3'C3'C4'O4'138.4°120.7°
N3'C3'C2'O2'24.7°20.4°
N3'C3'C2'C1'141.1°97.8°
N3'C3'C4'H1517.8°1.3°
N3'C3'C2'H1999.3°144.0°
OP1PO5'C5'25.1°55.0°
OP1POP2O5'124.6°120.0°
OP1POP2OP3171.3°120.0°
OP1PO5'OP3129.0°120.0°
OP1POP2HOP20.0°180.0°
OP1POP3HOP30.0°60.0°
C4'C3'C2'H14116.6°118.7°
C3'C4'C5'O4'117.4°117.8°
C3'C4'C5'H15120.1°121.1°
C3'C4'C5'O5'143.9°175.0°
C3'C4'O4'H15119.7°119.4°
C4'C3'C2'O2'96.3°139.1°
C4'C3'C2'C1'20.2°20.9°
C3'C4'O4'C1'4.9°26.5°
C4'C3'N3'H1399.1°25.0°
C3'C4'C5'H1696.0°55.0°
C3'C4'C5'H1723.7°65.0°
C4'C3'C2'H19139.7°97.3°
C2'C3'C4'C5'135.2°121.4°
C2'C3'C4'O4'15.8°2.0°
C3'C2'O2'C1'114.2°112.6°
C3'C2'O2'H19123.2°123.6°
C3'C2'C1'H19119.6°118.2°
C3'C2'C1'O4'17.6°37.1°
C3'C2'C1'N999.5°155.5°
C2'C3'N3'H1318.7°89.8°
C2'C3'C4'H15104.8°117.4°
C3'C2'O2'H20180.0°179.9°
C3'C2'C1'H21138.6°81.6°
C4'C5'O5'H16120.2°120.0°
C4'C5'O5'H17120.2°120.0°
C5'C4'O4'H15121.8°121.1°
C4'C5'O5'P178.8°180.0°
C5'C4'O4'C1'123.4°146.0°
C5'C4'C3'H1418.6°2.7°
C4'C5'H16H17119.5°120.0°
O5'C5'C4'O4'26.5°67.2°
C5'O5'POP2105.7°65.0°
C5'O5'POP3154.0°175.0°
O5'C5'C4'H1596.1°53.8°
O5'C5'H16H17119.5°120.0°
C4'O4'C1'C2'8.1°40.1°
C4'O4'C1'N9110.3°158.6°
O4'C4'C3'H14100.8°116.8°
O4'C4'C5'H16146.7°172.8°
O4'C4'C5'H1793.7°52.9°
C4'O4'C1'H21128.3°78.5°
O2'C2'C1'H19123.4°123.7°
O2'C2'C1'O4'99.4°155.2°
O2'C2'C1'N9143.5°86.3°
O2'C2'C3'H14147.1°102.2°
O2'C2'C1'H2121.6°36.5°
C2'C1'N9C868.8°95.0°
C2'C1'O4'N9118.4°118.5°
C2'C1'O4'H21120.2°118.6°
C2'C1'N9H21121.6°122.9°
C2'C1'N9C4111.7°85.0°
C1'C2'C3'H1496.4°139.6°
C1'C2'O2'H2065.8°67.3°
OP2PO5'OP3100.3°120.0°
OP2POP3HOP3170.0°60.0°
PO5'C5'H1658.7°60.0°
PO5'C5'H1761.0°59.9°
O5'POP2HOP2124.7°60.0°
O5'POP3HOP374.9°180.0°
N7C8N9H22180.0°179.9°
N7C8N9C1'179.5°180.0°
N7C8N9C40.1°0.0°
C8N7C5C40.0°0.0°
C8N7C5C6179.9°179.7°
C8N9C1'O4'47.6°19.1°
N9C8N7C50.0°0.0°
C8N9C1'C4179.5°179.9°
C8N9C4C50.1°0.0°
C8N9C4N3179.8°180.0°
C8N9C1'H21169.6°142.1°
O4'C1'N9H21122.0°123.0°
O4'C1'N9C4131.9°161.0°
C1'O4'C4'H15114.8°92.9°
O4'C1'C2'H19137.2°81.1°
N7C5C4N90.1°0.1°
N7C5C4C6179.9°179.7°
N7C5C4N3179.8°180.0°
N7C5C6N60.2°0.4°
N7C5C6N1179.8°179.9°
C5N7C8H22180.0°180.0°
C1'N9C4C5179.5°180.0°
C1'N9C4N30.2°0.1°
N9C1'C2'H1920.1°37.3°
C1'N9C8H220.5°0.0°
N9C4C5N3179.8°179.9°
N9C4C5C6179.9°179.8°
N9C4N3C2179.8°180.0°
C4N9C1'H219.9°37.9°
C4N9C8H22179.9°179.9°
C4C5C6N6179.9°180.0°
C4C5C6N10.1°0.3°
C5C4N3C20.1°0.0°
C6C5C4N30.1°0.3°
C5C6N6N1180.0°179.7°
C5C6N1C20.1°0.0°
C5C6N6H23180.0°0.0°
C5C6N6H2460.0°180.0°
C4N3C2N10.1°0.3°
C4N3C2H1179.9°180.0°
N6C6N1C2179.9°179.7°
C6N6H23H24120.0°180.0°
C6N1C2N30.1°0.3°
C6N1C2H1179.9°180.0°
N1C6N6H230.0°179.7°
N1C6N6H24120.0°0.3°
N3C2N1H1180.0°179.8°
OP3POP2HOP2171.3°59.9°
H2CACBH364.7°65.0°
H2CACBH4175.6°175.0°
H2CANH1058.9°180.0°
H2CANH11179.0°56.1°
H5CD2CE2H60.1°0.0°
H6CE2CZH70.0°0.0°
H7CZCE1H80.1°0.0°
H8CE1CD1H90.3°0.3°
H13N3'C3'H14140.6°147.5°
H14C3'C4'H15138.6°123.9°
H14C3'C2'H1923.1°21.4°
H15C4'C5'H1624.1°66.1°
H15C4'C5'H17143.7°173.9°
H19C2'O2'H2056.8°56.4°
H19C2'C1'H21101.8°160.2°

248636

PDB entries from 2026-02-04

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