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SummaryGeometryRelated PDB entries

KDZ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C10C09doub1.38Å1.39ÅAromatic
C10C11sing1.38Å1.39ÅAromatic
C09C08sing1.38Å1.39ÅAromatic
C11C12doub1.38Å1.39ÅAromatic
C08C07doub1.38Å1.39ÅAromatic
C12C07sing1.38Å1.39ÅAromatic
C07C06sing1.51Å1.53Å
C06S05sing1.81Å1.82Å
S05C04sing1.81Å1.88Å
C21C22doub1.38Å1.39ÅAromatic
C21C20sing1.38Å1.41ÅAromatic
O03B02sing1.37Å1.64Å
C22C14sing1.38Å1.39ÅAromatic
C04C13sing1.53Å1.52Å
C04B02sing1.60Å1.59Å
C20C16doub1.39Å1.39ÅAromatic
C14C13sing1.51Å1.55Å
C14C15doub1.38Å1.39ÅAromatic
B02O23sing1.36Å1.34Å
B02O01sing1.37Å1.63Å
C16C15sing1.41Å1.38ÅAromatic
C16C17sing1.47Å1.51Å
C15O23sing1.35Å1.43Å
O19C17doub1.21Å1.27Å
C17O18sing1.35Å1.27Å
C04H1sing1.09Å1.10Å
C06H2sing1.09Å1.10Å
C06H3sing1.09Å1.10Å
C08H4sing1.08Å1.08Å
C09H5sing1.08Å1.08Å
C10H6sing1.08Å1.08Å
C11H7sing1.08Å1.08Å
C12H8sing1.08Å1.08Å
C13H9sing1.09Å1.10Å
C13H10sing1.09Å1.10Å
C20H11sing1.08Å1.08Å
C21H12sing1.08Å1.08Å
C22H13sing1.08Å1.08Å
O01H14sing0.97Å0.95Å
O03H15sing0.97Å0.95Å
O18H16sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C09C10C11120.4°120.0°
C10C09C08120.0°120.0°
C10C09H5120.0°120.0°
C09C10H6119.8°120.0°
C10C11C12119.8°120.0°
C11C10H6119.8°120.0°
C10C11H7120.1°120.0°
C09C08C07119.7°120.0°
C09C08H4120.1°120.0°
C08C09H5120.0°120.0°
C11C12C07119.8°120.0°
C12C11H7120.1°120.0°
C11C12H8120.1°120.1°
C08C07C12120.3°120.0°
C08C07C06119.3°120.0°
C07C08H4120.1°120.0°
C12C07C06120.5°120.0°
C07C12H8120.1°120.0°
C07C06S05111.1°109.5°
C07C06H2109.1°109.5°
C07C06H3109.0°109.4°
C06S05C04107.9°103.0°
S05C06H2109.1°109.5°
S05C06H3109.1°109.5°
S05C04C13106.2°109.8°
S05C04B02115.4°109.8°
S05C04H1106.1°109.9°
C22C21C20120.8°120.1°
C21C22C14119.3°120.7°
C22C21H12119.6°120.0°
C21C22H13120.4°119.6°
C21C20C16119.5°119.8°
C21C20H11120.2°120.1°
C20C21H12119.6°119.9°
O03B02C04112.3°109.8°
O03B02O23107.2°109.6°
O03B02O0199.1°109.6°
B02O03H15109.5°114.1°
C22C14C13122.8°118.3°
C22C14C15119.7°120.1°
C14C22H13120.4°119.7°
C13C04B02110.0°107.6°
C04C13C14107.0°109.1°
C13C04H1110.0°109.8°
C04C13H9110.1°109.6°
C04C13H10110.1°109.5°
C04B02O23118.5°108.6°
C04B02O01112.4°109.6°
B02C04H1109.0°109.8°
C20C16C15118.8°120.1°
C20C16C17121.7°120.0°
C16C20H11120.2°120.1°
C13C14C15117.5°121.6°
C14C13H9110.1°109.5°
C14C13H10110.1°109.6°
C14C15C16121.8°119.2°
C14C15O23117.6°123.0°
O23B02O01105.2°109.7°
B02O23C15111.5°116.8°
B02O01H14109.5°114.0°
C15C16C17119.4°120.0°
C16C15O23120.5°117.8°
C16C17O19117.9°120.0°
C16C17O18119.9°120.0°
O19C17O18122.1°120.0°
C17O18H16109.5°116.9°
H2C06H3109.5°109.4°
H9C13H10109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C09C10C11H6180.0°179.9°
C10C09C08H5180.0°179.9°
C09C10C11C120.1°0.4°
C10C09C08C070.4°0.0°
C10C09C08H4179.6°180.0°
C09C10C11H7179.9°180.0°
C11C10C09C080.1°0.0°
C10C11C12H7180.0°179.6°
C10C11C12C070.3°0.7°
C11C10C09H5179.9°179.9°
C10C11C12H8179.7°180.0°
C09C08C07H4180.0°180.0°
C09C08C07C120.7°0.3°
C09C08C07C06180.0°180.0°
C08C09C10H6179.9°179.9°
C11C12C07C080.7°0.6°
C11C12C07H8180.0°179.3°
C11C12C07C06179.9°179.6°
C12C11C10H6179.9°179.7°
C08C07C12C06179.3°179.7°
C08C07C06S05128.5°90.0°
C08C07C06H28.2°150.0°
C08C07C06H3111.3°30.0°
C07C08C09H5179.6°180.0°
C08C07C12H8179.4°180.0°
C12C07C06S0552.3°90.3°
C12C07C06H2172.5°29.8°
C12C07C06H368.0°149.7°
C12C07C08H4179.3°179.7°
C07C12C11H7179.7°179.7°
C07C06S05H2120.3°120.0°
C07C06S05H3120.2°120.0°
C07C06S05C04167.4°180.0°
C07C06H2H3119.2°119.9°
C06C07C08H40.0°0.1°
C06C07C12H80.1°0.3°
C06S05C04C13162.8°135.0°
C06S05C04B0275.1°106.8°
C06S05C04H145.7°14.1°
S05C06H2H3119.2°120.0°
S05C04B02O038.0°65.5°
S05C04C13B02125.5°119.5°
S05C04C13H1114.4°120.9°
S05C04B02H1119.2°120.9°
S05C04C13C1480.4°164.4°
S05C04B02O23118.0°174.7°
S05C04B02O01118.9°54.9°
C04S05C06H272.3°60.0°
C04S05C06H347.2°60.0°
S05C04C13H9159.9°75.7°
S05C04C13H1039.2°44.4°
C22C21C20H12180.0°179.9°
C21C22C14H13180.0°180.0°
C22C21C20C161.0°0.1°
C21C22C14C13178.6°179.8°
C21C22C14C150.8°0.3°
C22C21C20H11179.0°180.0°
C20C21C22C141.1°0.1°
C21C20C16H11180.0°180.0°
C21C20C16C150.7°0.0°
C21C20C16C17179.2°180.0°
C20C21C22H13178.9°180.0°
O03B02C04C13128.1°54.1°
O03B02C04O23126.0°119.8°
O03B02C04O01110.8°120.4°
O03B02O23O01104.9°120.3°
O03B02O23C1581.8°67.3°
O03B02C04H1111.1°173.6°
O03B02O01H14180.0°60.4°
C22C14C13C04132.3°164.1°
C22C14C13C15177.8°179.9°
C22C14C15C160.5°0.4°
C22C14C15O23179.8°179.5°
C22C14C13H9108.1°44.2°
C22C14C13H1012.7°76.0°
C14C22C21H12178.9°180.0°
C13C04B02H1120.7°119.5°
C04C13C14H9119.6°119.9°
C04C13C14H10119.6°119.9°
C04C13C14C1545.5°15.8°
C13C04B02O232.1°65.7°
C13C04B02O01121.0°174.5°
C04C13H9H10121.1°120.2°
B02C04C13C1445.1°44.8°
C04B02O23O01126.7°119.8°
C04B02O23C1546.7°52.5°
B02C04C13H974.6°164.7°
B02C04C13H10164.7°75.1°
C04B02O01H1461.2°179.0°
C04B02O03H15180.0°179.1°
C20C16C15C140.4°0.2°
C20C16C15C17178.5°180.0°
C20C16C15O23179.8°179.6°
C20C16C17O1928.8°180.0°
C20C16C17O18155.0°0.0°
C16C20C21H12179.0°179.9°
C13C14C15C16178.4°179.7°
C13C14C15O231.9°0.5°
C14C13C04H1165.2°74.7°
C14C13H9H10121.1°120.2°
C13C14C22H131.4°0.2°
C14C15O23B0249.9°21.0°
C14C15C16O23179.7°179.8°
C14C15C16C17179.0°179.7°
C15C14C13H974.1°135.7°
C15C14C13H10165.2°104.1°
C15C14C22H13179.2°179.8°
B02O23C15C16130.4°159.1°
O23B02C04H1122.9°53.8°
O23B02O01H1469.2°60.0°
O23B02O03H1548.1°60.0°
O01B02O23C15173.4°172.3°
O01B02C04H10.3°66.0°
O01B02O03H1561.1°60.4°
C15C16C17O19149.7°0.0°
C15C16C17O1826.5°180.0°
C15C16C20H11179.3°180.0°
C17C16C15O231.3°0.4°
C16C17O19O18176.1°180.0°
C17C16C20H110.8°0.1°
C16C17O18H16176.0°180.0°
O19C17O18H160.0°0.0°
H1C04C13H945.5°45.2°
H1C04C13H1075.2°165.4°
H4C08C09H50.4°0.1°
H5C09C10H60.1°0.0°
H6C10C11H70.1°0.1°
H7C11C12H80.3°0.4°
H11C20C21H121.0°0.1°
H12C21C22H131.1°0.1°

249697

PDB entries from 2026-02-25

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