English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

KDV

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C10	C9	doub	1.36Å	1.38Å	Aromatic
C10	C11	sing	1.41Å	1.42Å	Aromatic
C9	C8	sing	1.39Å	1.39Å	Aromatic
C12	C11	doub	1.40Å	1.40Å	Aromatic
C12	C3	sing	1.39Å	1.39Å	Aromatic
C11	C6	sing	1.42Å	1.41Å	Aromatic
C8	C7	doub	1.36Å	1.38Å	Aromatic
C3	C2	sing	1.43Å	1.44Å
C3	C4	doub	1.41Å	1.39Å	Aromatic
N1	C2	trip	1.14Å	1.14Å
C6	C7	sing	1.41Å	1.41Å	Aromatic
C6	N5	doub	1.34Å	1.37Å	Aromatic
C4	N5	sing	1.31Å	1.34Å	Aromatic
C7	H14	sing	1.08Å	1.08Å
C8	H15	sing	1.08Å	1.08Å
C10	H17	sing	1.08Å	1.08Å
C12	H18	sing	1.08Å	1.08Å
C4	H13	sing	1.08Å	1.08Å
C9	H16	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C9	C10	C11	120.6°	119.6°
C10	C9	C8	120.5°	120.8°
C9	C10	H17	119.7°	120.2°
C10	C9	H16	119.8°	119.6°
C10	C11	C12	122.9°	121.2°
C10	C11	C6	118.7°	119.6°
C11	C10	H17	119.7°	120.2°
C9	C8	C7	120.3°	121.1°
C9	C8	H15	119.8°	119.5°
C8	C9	H16	119.7°	119.6°
C11	C12	C3	119.2°	117.9°
C12	C11	C6	118.4°	119.2°
C11	C12	H18	120.4°	121.1°
C12	C3	C2	120.7°	120.3°
C12	C3	C4	119.0°	119.4°
C3	C12	H18	120.4°	121.0°
C11	C6	C7	119.3°	119.0°
C11	C6	N5	121.7°	120.1°
C8	C7	C6	120.6°	119.8°
C8	C7	H14	119.7°	120.1°
C7	C8	H15	119.9°	119.4°
C2	C3	C4	120.3°	120.3°
C3	C2	N1	179.3°	180.0°
C3	C4	N5	123.3°	121.5°
C3	C4	H13	118.3°	119.3°
C7	C6	N5	119.0°	120.9°
C6	C7	H14	119.7°	120.1°
C6	N5	C4	118.3°	121.8°
N5	C4	H13	118.3°	119.2°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C9	C10	C11	H17	180.0°	179.2°
C10	C9	C8	H16	180.0°	179.2°
C9	C10	C11	C12	180.0°	179.5°
C9	C10	C11	C6	0.0°	0.5°
C10	C9	C8	C7	0.0°	0.5°
C10	C9	C8	H15	179.9°	179.5°
C11	C10	C9	C8	0.0°	0.8°
C10	C11	C12	C6	180.0°	180.0°
C10	C11	C12	C3	180.0°	180.0°
C10	C11	C6	C7	0.1°	0.0°
C10	C11	C6	N5	180.0°	179.7°
C10	C11	C12	H18	0.0°	0.0°
C11	C10	C9	H16	180.0°	180.0°
C9	C8	C7	H15	180.0°	180.0°
C9	C8	C7	C6	0.0°	0.0°
C9	C8	C7	H14	180.0°	180.0°
C8	C9	C10	H17	180.0°	180.0°
C11	C12	C3	H18	180.0°	180.0°
C11	C12	C3	C2	180.0°	180.0°
C11	C12	C3	C4	0.0°	0.2°
C12	C11	C6	C7	180.0°	180.0°
C12	C11	C6	N5	0.0°	0.3°
C12	C11	C10	H17	0.0°	0.3°
C3	C12	C11	C6	0.0°	0.0°
C12	C3	C2	C4	180.0°	179.8°
C12	C3	C2	N1	5.6°	85.0°
C12	C3	C4	N5	0.1°	0.2°
C12	C3	C4	H13	179.9°	179.7°
C11	C6	C7	C8	0.0°	0.3°
C11	C6	C7	N5	179.9°	179.7°
C11	C6	N5	C4	0.0°	0.3°
C11	C6	C7	H14	179.9°	179.7°
C6	C11	C10	H17	180.0°	179.7°
C6	C11	C12	H18	180.0°	180.0°
C8	C7	C6	H14	180.0°	180.0°
C8	C7	C6	N5	180.0°	179.9°
C7	C8	C9	H16	180.0°	179.7°
C2	C3	C4	N5	180.0°	180.0°
C2	C3	C12	H18	0.0°	0.0°
C2	C3	C4	H13	0.1°	0.1°
C4	C3	C2	N1	174.4°	94.8°
C3	C4	N5	C6	0.0°	0.1°
C3	C4	N5	H13	180.0°	179.9°
C4	C3	C12	H18	180.0°	179.8°
C7	C6	N5	C4	179.9°	180.0°
C6	C7	C8	H15	180.0°	180.0°
N5	C6	C7	H14	0.0°	0.1°
C6	N5	C4	H13	179.9°	180.0°
H14	C7	C8	H15	0.0°	0.0°
H15	C8	C9	H16	0.0°	0.3°
H17	C10	C9	H16	0.0°	0.9°

247536

PDB entries from 2026-01-14

PDB statistics

PDBj update info

Contact PDBj

numon