English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

K9S

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	S2	sing	1.75Å	1.72Å	Aromatic
C1	C5	doub	1.32Å	1.44Å	Aromatic
N1	C10	sing	1.47Å	1.46Å
S2	C3	sing	1.76Å	1.75Å	Aromatic
C3	C4	sing	1.40Å	1.42Å	Aromatic
C3	C6	doub	1.40Å	1.39Å	Aromatic
C4	C5	sing	1.45Å	1.38Å	Aromatic
C4	C9	doub	1.41Å	1.41Å	Aromatic
C5	C10	sing	1.51Å	1.48Å
C6	C7	sing	1.38Å	1.44Å	Aromatic
C7	C8	doub	1.39Å	1.34Å	Aromatic
C8	C9	sing	1.36Å	1.48Å	Aromatic
C1	H1	sing	1.08Å	1.08Å
N1	H11N	sing	1.01Å	1.00Å
N1	H12N	sing	1.01Å	1.00Å
C10	H101	sing	1.09Å	1.10Å
C10	H102	sing	1.09Å	1.10Å
C6	H6	sing	1.08Å	1.08Å
C9	H9	sing	1.08Å	1.08Å
C7	H7	sing	1.08Å	1.08Å
C8	H8	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
S2	C1	C5	110.8°	111.4°
C1	S2	C3	93.0°	92.2°
S2	C1	H1	124.6°	124.3°
C1	C5	C4	112.5°	114.8°
C1	C5	C10	125.6°	122.6°
C5	C1	H1	124.6°	124.3°
N1	C10	C5	112.4°	109.5°
C10	N1	H11N	109.5°	111.0°
C10	N1	H12N	109.5°	111.0°
N1	C10	H101	108.8°	109.4°
N1	C10	H102	108.7°	109.5°
S2	C3	C4	109.4°	109.6°
S2	C3	C6	130.6°	130.6°
C4	C3	C6	120.0°	119.8°
C3	C4	C5	114.3°	111.9°
C3	C4	C9	121.0°	118.8°
C3	C6	C7	120.9°	120.2°
C3	C6	H6	119.6°	119.9°
C5	C4	C9	124.7°	129.3°
C4	C5	C10	122.0°	122.6°
C4	C9	C8	116.3°	120.5°
C4	C9	H9	121.9°	119.8°
C5	C10	H101	108.7°	109.5°
C5	C10	H102	108.8°	109.5°
C6	C7	C8	118.7°	120.2°
C7	C6	H6	119.5°	119.9°
C6	C7	H7	120.6°	119.9°
C7	C8	C9	123.1°	120.6°
C8	C7	H7	120.6°	119.9°
C7	C8	H8	118.5°	119.7°
C8	C9	H9	121.8°	119.7°
C9	C8	H8	118.5°	119.7°
H11N	N1	H12N	109.4°	111.0°
H101	C10	H102	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
S2	C1	C5	H1	180.0°	179.6°
C1	S2	C3	C4	1.8°	0.0°
C1	S2	C3	C6	178.7°	180.0°
S2	C1	C5	C4	0.7°	0.1°
S2	C1	C5	C10	179.2°	180.0°
C1	C5	C10	N1	10.0°	100.0°
C5	C1	S2	C3	1.4°	0.0°
C1	C5	C4	C3	0.7°	0.1°
C1	C5	C4	C10	178.6°	179.9°
C1	C5	C4	C9	178.4°	180.0°
C1	C5	C10	H101	110.5°	140.0°
C1	C5	C10	H102	130.4°	20.0°
N1	C10	C5	C4	171.6°	80.0°
N1	C10	C5	H101	120.4°	120.0°
N1	C10	C5	H102	120.4°	120.0°
C10	N1	H11N	H12N	120.0°	123.9°
N1	C10	H101	H102	118.7°	120.0°
S2	C3	C4	C6	177.3°	180.0°
S2	C3	C4	C5	1.7°	0.1°
S2	C3	C4	C9	179.5°	180.0°
S2	C3	C6	C7	179.3°	180.0°
C3	S2	C1	H1	178.6°	179.7°
S2	C3	C6	H6	0.7°	0.0°
C3	C4	C5	C9	177.7°	179.9°
C3	C4	C5	C10	177.9°	180.0°
C4	C3	C6	C7	2.6°	0.0°
C3	C4	C9	C8	1.5°	0.0°
C4	C3	C6	H6	177.4°	180.0°
C3	C4	C9	H9	178.5°	179.9°
C6	C3	C4	C5	179.1°	179.9°
C6	C3	C4	C9	3.1°	0.0°
C3	C6	C7	H6	180.0°	179.9°
C3	C6	C7	C8	0.5°	0.1°
C3	C6	C7	H7	179.5°	180.0°
C5	C4	C9	C8	179.1°	179.9°
C4	C5	C1	H1	179.3°	179.7°
C4	C5	C10	H101	67.9°	39.9°
C4	C5	C10	H102	51.2°	159.9°
C5	C4	C9	H9	0.9°	0.1°
C9	C4	C5	C10	0.2°	0.1°
C4	C9	C8	C7	0.6°	0.0°
C4	C9	C8	H9	180.0°	180.0°
C4	C9	C8	H8	179.4°	179.9°
C10	C5	C1	H1	0.8°	0.3°
C5	C10	N1	H11N	180.0°	56.1°
C5	C10	N1	H12N	60.0°	180.0°
C5	C10	H101	H102	118.7°	120.0°
C6	C7	C8	H7	180.0°	179.9°
C6	C7	C8	C9	1.1°	0.1°
C6	C7	C8	H8	178.9°	180.0°
C7	C8	C9	H8	180.0°	179.9°
C8	C7	C6	H6	179.5°	180.0°
C7	C8	C9	H9	179.4°	180.0°
C9	C8	C7	H7	178.9°	180.0°
H11N	N1	C10	H101	59.6°	176.0°
H11N	N1	C10	H102	59.6°	64.0°
H12N	N1	C10	H101	60.4°	60.0°
H12N	N1	C10	H102	179.6°	60.0°
H6	C6	C7	H7	0.5°	0.1°
H9	C9	C8	H8	0.6°	0.1°
H7	C7	C8	H8	1.0°	0.1°

225399

PDB entries from 2024-09-25

PDB statistics

PDBj update info

Contact PDBj

numon