English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

K8G

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O01	C02	doub	1.21Å	1.27Å
O09	N08	sing	1.22Å	1.18Å
C05	C06	doub	1.38Å	1.38Å	Aromatic
C05	C04	sing	1.39Å	1.39Å	Aromatic
C06	C07	sing	1.38Å	1.38Å	Aromatic
O14	C13	doub	1.21Å	1.27Å
C02	C04	sing	1.48Å	1.53Å
C02	O03	sing	1.35Å	1.26Å
C04	C12	doub	1.41Å	1.39Å	Aromatic
C07	N08	sing	1.48Å	1.45Å
C07	C11	doub	1.38Å	1.39Å	Aromatic
N08	O10	doub	1.22Å	1.18Å
C12	C11	sing	1.39Å	1.38Å	Aromatic
C12	C13	sing	1.48Å	1.53Å
C13	O15	sing	1.35Å	1.27Å
C05	H1	sing	1.08Å	1.08Å
C06	H2	sing	1.08Å	1.08Å
C11	H3	sing	1.08Å	1.08Å
O03	H4	sing	0.97Å	0.95Å
O15	H5	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O01	C02	C04	120.1°	120.0°
O01	C02	O03	121.4°	120.0°
O09	N08	C07	119.7°	120.0°
O09	N08	O10	121.3°	120.0°
C06	C05	C04	119.8°	120.0°
C05	C06	C07	119.7°	120.4°
C06	C05	H1	120.1°	120.0°
C05	C06	H2	120.2°	119.8°
C05	C04	C02	119.3°	120.2°
C05	C04	C12	120.6°	119.6°
C04	C05	H1	120.1°	120.0°
C06	C07	N08	119.1°	119.8°
C06	C07	C11	120.7°	120.4°
C07	C06	H2	120.1°	119.8°
O14	C13	C12	121.6°	120.0°
O14	C13	O15	121.0°	120.0°
C04	C02	O03	118.5°	120.1°
C02	C04	C12	120.1°	120.2°
C02	O03	H4	109.5°	117.1°
C04	C12	C11	119.7°	119.6°
C04	C12	C13	119.6°	120.2°
N08	C07	C11	120.2°	119.8°
C07	N08	O10	118.9°	120.0°
C07	C11	C12	119.5°	120.0°
C07	C11	H3	120.2°	120.0°
C11	C12	C13	120.7°	120.1°
C12	C11	H3	120.2°	120.0°
C12	C13	O15	117.5°	120.1°
C13	O15	H5	109.5°	117.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O01	C02	C04	C05	115.2°	125.0°
O01	C02	C04	O03	179.7°	180.0°
O01	C02	C04	C12	64.8°	55.3°
O01	C02	O03	H4	0.0°	0.0°
O09	N08	C07	C06	128.7°	180.0°
O09	N08	C07	O10	179.0°	180.0°
O09	N08	C07	C11	51.7°	0.0°
C06	C05	C04	H1	180.0°	180.0°
C05	C06	C07	H2	180.0°	180.0°
C06	C05	C04	C02	179.9°	180.0°
C06	C05	C04	C12	0.1°	0.3°
C05	C06	C07	N08	179.2°	180.0°
C05	C06	C07	C11	0.4°	0.0°
C04	C05	C06	C07	0.6°	0.0°
C05	C04	C02	C12	180.0°	179.7°
C05	C04	C02	O03	64.4°	55.0°
C05	C04	C12	C11	0.9°	0.5°
C05	C04	C12	C13	178.8°	179.7°
C04	C05	C06	H2	179.4°	180.0°
C06	C07	N08	C11	179.6°	180.0°
C06	C07	N08	O10	52.3°	0.0°
C06	C07	C11	C12	0.4°	0.2°
C07	C06	C05	H1	179.5°	180.0°
C06	C07	C11	H3	179.6°	179.9°
O14	C13	C12	C04	122.5°	6.4°
O14	C13	C12	C11	59.6°	173.9°
O14	C13	C12	O15	179.7°	179.7°
O14	C13	O15	H5	0.0°	0.3°
C02	C04	C12	C11	179.1°	179.8°
C02	C04	C12	C13	1.2°	0.0°
C02	C04	C05	H1	0.1°	0.0°
C04	C02	O03	H4	179.7°	180.0°
O03	C02	C04	C12	115.6°	124.7°
C04	C12	C11	C07	1.0°	0.5°
C04	C12	C11	C13	177.9°	179.8°
C04	C12	C13	O15	57.8°	173.3°
C12	C04	C05	H1	179.9°	179.7°
C04	C12	C11	H3	179.0°	179.7°
N08	C07	C11	C12	180.0°	179.8°
N08	C07	C06	H2	0.8°	0.0°
N08	C07	C11	H3	0.0°	0.1°
C11	C07	N08	O10	127.3°	180.0°
C07	C11	C12	H3	180.0°	179.8°
C07	C11	C12	C13	179.0°	179.7°
C11	C07	C06	H2	179.6°	180.0°
C11	C12	C13	O15	120.1°	6.5°
C13	C12	C11	H3	1.1°	0.1°
C12	C13	O15	H5	179.7°	180.0°
H1	C05	C06	H2	0.6°	0.0°

222415

PDB entries from 2024-07-10

PDB statistics

PDBj update info

Contact PDBj

numon