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Summary Geometry Related PDB entries

K7L

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C1	sing	1.35Å	1.35Å
C1	C2	sing	1.40Å	1.40Å	Aromatic
C2	C3	doub	1.36Å	1.39Å	Aromatic
C3	O2	sing	1.35Å	1.36Å
C3	N1	sing	1.37Å	1.38Å	Aromatic
N1	C4	sing	1.37Å	1.38Å	Aromatic
C4	C5	doub	1.35Å	1.36Å	Aromatic
C5	N2	sing	1.34Å	1.37Å	Aromatic
N2	C6	doub	1.33Å	1.33Å	Aromatic
C6	N3	sing	1.34Å	1.34Å	Aromatic
C1	N3	doub	1.32Å	1.31Å	Aromatic
N1	C6	sing	1.37Å	1.40Å	Aromatic
C4	H4	sing	1.08Å	1.08Å
C5	H5	sing	1.08Å	1.08Å
C2	H2	sing	1.08Å	1.08Å
O1	H1	sing	0.97Å	0.95Å
O2	H3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C2	119.6°	119.8°
O1	C1	N3	117.1°	119.8°
C1	O1	H1	109.5°	114.0°
C1	C2	C3	118.9°	119.2°
C2	C1	N3	123.3°	120.3°
C1	C2	H2	120.5°	120.4°
C2	C3	O2	123.1°	120.5°
C2	C3	N1	117.7°	119.0°
C3	C2	H2	120.5°	120.4°
O2	C3	N1	119.2°	120.5°
C3	O2	H3	109.5°	114.0°
C3	N1	C4	133.4°	132.7°
C3	N1	C6	119.5°	120.2°
N1	C4	C5	105.7°	107.0°
C4	N1	C6	107.1°	107.1°
N1	C4	H4	127.2°	126.5°
C4	C5	N2	111.5°	108.7°
C5	C4	H4	127.2°	126.5°
C4	C5	H5	124.2°	125.6°
C5	N2	C6	106.0°	109.3°
N2	C5	H5	124.2°	125.7°
N2	C6	N3	128.4°	131.9°
N2	C6	N1	109.7°	107.8°
C6	N3	C1	118.6°	120.9°
N3	C6	N1	121.9°	120.3°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C2	N3	179.8°	179.9°
O1	C1	C2	C3	180.0°	180.0°
O1	C1	N3	C6	179.8°	179.9°
O1	C1	C2	H2	0.1°	0.2°
C1	C2	C3	H2	180.0°	179.8°
C1	C2	C3	O2	179.6°	179.9°
C1	C2	C3	N1	0.2°	0.1°
C2	C1	N3	C6	0.0°	0.2°
C2	C1	O1	H1	179.8°	180.0°
C2	C3	O2	N1	179.8°	180.0°
C2	C3	N1	C4	180.0°	180.0°
C3	C2	C1	N3	0.2°	0.1°
C2	C3	N1	C6	0.0°	0.3°
C2	C3	O2	H3	180.0°	0.1°
O2	C3	N1	C4	0.2°	0.0°
O2	C3	N1	C6	179.8°	179.7°
O2	C3	C2	H2	0.4°	0.3°
C3	N1	C4	C6	180.0°	179.7°
C3	N1	C4	C5	179.8°	179.7°
C3	N1	C6	N2	179.8°	179.7°
C3	N1	C6	N3	0.2°	0.2°
C3	N1	C4	H4	0.2°	0.3°
N1	C3	C2	H2	179.7°	179.7°
N1	C3	O2	H3	0.2°	179.9°
N1	C4	C5	H4	180.0°	180.0°
N1	C4	C5	N2	0.0°	0.1°
C4	N1	C6	N2	0.2°	0.0°
C4	N1	C6	N3	179.8°	180.0°
N1	C4	C5	H5	180.0°	179.9°
C4	C5	N2	H5	180.0°	179.9°
C4	C5	N2	C6	0.2°	0.1°
C5	C4	N1	C6	0.1°	0.0°
C5	N2	C6	N3	179.8°	179.9°
C5	N2	C6	N1	0.2°	0.0°
N2	C5	C4	H4	180.0°	180.0°
N2	C6	N3	N1	179.5°	180.0°
N2	C6	N3	C1	179.7°	180.0°
C6	N2	C5	H5	179.8°	179.9°
C1	N3	C6	N1	0.2°	0.0°
N3	C1	C2	H2	179.7°	180.0°
N3	C1	O1	H1	0.0°	0.1°
C6	N1	C4	H4	179.9°	180.0°
H4	C4	C5	H5	0.0°	0.1°

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PDB entries from 2026-01-14

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