Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

K2F

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
SP1Pdoub1.86Å1.90Å
POP2sing1.61Å1.48Å
PO5'sing1.61Å1.59Å
N6C6sing1.38Å1.34Å
N7C8doub1.30Å1.31ÅAromatic
N7C5sing1.35Å1.39ÅAromatic
O5'C5'sing1.43Å1.43Å
C8N9sing1.36Å1.37ÅAromatic
C6C5doub1.41Å1.41ÅAromatic
C6N1sing1.33Å1.35ÅAromatic
C5C4sing1.41Å1.38ÅAromatic
C5'C4'sing1.53Å1.51Å
N9C4sing1.37Å1.37ÅAromatic
N9C1'sing1.47Å1.46Å
N1C2doub1.32Å1.34ÅAromatic
C4N3doub1.33Å1.35ÅAromatic
O4'C4'sing1.44Å1.45Å
O4'C1'sing1.44Å1.43Å
C4'C3'sing1.54Å1.52Å
C3'O3'sing1.43Å1.43Å
C3'C2'sing1.55Å1.52Å
C1'C2'sing1.55Å1.54Å
C2N3sing1.32Å1.33ÅAromatic
C2'O2'sing1.43Å1.43Å
O2'CA'sing1.43Å1.43Å
CA'CB'sing1.53Å1.49Å
CB'OC'sing1.43Å1.42Å
CD'OC'sing1.43Å1.42Å
C2H1'sing1.08Å1.08Å
C1'H1sing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5''sing1.09Å1.10Å
C8H8sing1.08Å1.08Å
CA'H9sing1.09Å1.10Å
CA'H10sing1.09Å1.10Å
CB'H11sing1.09Å1.10Å
CB'H12sing1.09Å1.10Å
CD'H13sing1.09Å1.10Å
CD'H14sing1.09Å1.10Å
CD'H15sing1.09Å1.10Å
N6H61sing0.97Å1.00Å
N6H62sing0.97Å1.00Å
O3'HO3'sing0.97Å0.95Å
OP2HOP2sing0.97Å0.95Å
POP3sing1.61Å1.61Å
OP3HOP3sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
SP1POP2119.1°109.4°
SP1PO5'104.6°109.5°
SP1POP3110.6°109.5°
OP2PO5'107.8°109.5°
POP2HOP2109.5°113.9°
OP2POP3110.1°109.4°
PO5'C5'120.8°123.0°
O5'POP3103.3°109.5°
N6C6C5123.7°120.8°
N6C6N1118.6°120.7°
C6N6H61109.5°120.0°
C6N6H62109.5°120.0°
C8N7C5103.9°109.4°
N7C8N9113.8°110.0°
N7C8H8123.1°125.0°
N7C5C6132.3°134.7°
N7C5C4110.7°107.2°
O5'C5'C4'111.4°109.5°
O5'C5'H5'109.0°109.5°
O5'C5'H5''109.0°109.5°
C8N9C4105.7°107.5°
C8N9C1'128.2°126.3°
N9C8H8123.1°125.0°
C5C6N1117.7°118.5°
C6C5C4117.0°118.2°
C6N1C2118.5°121.1°
C5C4N9105.9°106.0°
C5C4N3126.8°119.1°
C5'C4'O4'111.1°110.0°
C5'C4'C3'116.6°109.9°
C5'C4'H4'108.1°109.9°
C4'C5'H5'109.0°109.5°
C4'C5'H5''109.0°109.5°
C4N9C1'126.1°126.2°
N9C4N3127.3°135.0°
N9C1'O4'108.7°110.8°
N9C1'C2'114.1°110.6°
N9C1'H1109.2°110.5°
N1C2N3129.4°122.5°
N1C2H1'115.3°118.7°
C4N3C2110.6°120.6°
C4'O4'C1'109.0°107.0°
O4'C4'C3'103.8°107.3°
O4'C4'H4'109.0°109.9°
O4'C1'C2'106.8°103.5°
O4'C1'H1109.7°110.6°
C4'C3'O3'112.1°110.5°
C4'C3'C2'101.2°104.2°
C4'C3'H3'109.7°110.6°
C3'C4'H4'108.0°109.9°
O3'C3'C2'112.7°110.5°
O3'C3'H3'111.0°110.4°
C3'O3'HO3'109.5°114.0°
C3'C2'C1'101.5°102.1°
C3'C2'O2'108.4°110.9°
C3'C2'H2'112.1°110.9°
C2'C3'H3'109.8°110.5°
C1'C2'O2'108.9°111.0°
C2'C1'H1108.2°110.6°
C1'C2'H2'111.8°110.9°
N3C2H1'115.3°118.8°
C2'O2'CA'114.8°114.0°
O2'C2'H2'113.6°110.8°
O2'CA'CB'109.6°109.5°
O2'CA'H9109.5°109.4°
O2'CA'H10109.5°109.5°
CA'CB'OC'110.2°109.4°
CB'CA'H9109.4°109.4°
CB'CA'H10109.4°109.5°
CA'CB'H11109.3°109.5°
CA'CB'H12109.3°109.4°
CB'OC'CD'112.6°114.0°
OC'CB'H11109.3°109.5°
OC'CB'H12109.3°109.4°
OC'CD'H13109.5°109.5°
OC'CD'H14109.5°109.5°
OC'CD'H15109.5°109.5°
H5'C5'H5''109.5°109.4°
H9CA'H10109.5°109.5°
H11CB'H12109.5°109.5°
H13CD'H14109.5°109.5°
H13CD'H15109.4°109.4°
H14CD'H15109.5°109.5°
H61N6H62109.5°120.0°
POP3HOP3109.5°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
SP1POP2O5'118.8°120.0°
SP1POP2OP3129.2°120.0°
SP1PO5'OP3115.8°120.1°
SP1PO5'C5'169.9°44.9°
SP1POP2HOP20.0°180.0°
SP1POP3HOP30.0°59.9°
OP2PO5'OP3116.5°120.0°
OP2PO5'C5'42.2°75.0°
OP2POP3HOP3133.6°60.0°
PO5'C5'C4'171.5°180.0°
PO5'C5'H5'68.2°60.0°
PO5'C5'H5''51.2°59.9°
O5'POP2HOP2118.8°60.0°
O5'POP3HOP3111.5°180.0°
N6C6C5N71.6°0.6°
N6C6C5N1178.7°179.4°
N6C6C5C4177.9°179.9°
N6C6N1C2178.6°179.8°
C6N6H61H62120.0°180.0°
N7C8N9H8180.0°179.9°
C8N7C5C6179.0°179.4°
C8N7C5C40.5°0.1°
N7C8N9C40.6°0.0°
N7C8N9C1'178.0°180.0°
C5N7C8N90.1°0.1°
N7C5C6C4179.4°179.3°
N7C5C6N1179.7°180.0°
N7C5C4N90.9°0.0°
N7C5C4N3179.4°180.0°
C5N7C8H8179.9°180.0°
O5'C5'C4'H5'120.3°120.0°
O5'C5'C4'H5''120.3°120.0°
O5'C5'C4'O4'50.1°67.1°
O5'C5'C4'C3'68.5°175.0°
O5'C5'C4'H4'169.7°54.0°
O5'C5'H5'H5''119.1°120.0°
C5'O5'POP374.3°165.0°
C8N9C4C50.9°0.0°
C8N9C4C1'178.7°180.0°
C8N9C4N3179.4°179.9°
C8N9C1'O4'16.0°19.3°
C8N9C1'C2'103.0°95.0°
C8N9C1'H1135.7°142.2°
C6C5C4N9178.7°179.5°
C5C6N1C20.2°0.4°
C6C5C4N31.1°0.5°
C5C6N6H61178.7°0.0°
C5C6N6H6258.7°180.0°
N1C6C5C40.9°0.7°
C6N1C2N30.5°0.0°
C6N1C2H1'179.5°179.8°
N1C6N6H610.0°179.3°
N1C6N6H62120.0°0.6°
C5C4N9N3179.8°179.9°
C5C4N9C1'177.8°180.0°
C5C4N3C20.4°0.1°
C5'C4'O4'C3'126.1°119.5°
C5'C4'O4'H4'119.1°121.1°
C5'C4'O4'C1'152.1°146.0°
C5'C4'C3'H4'121.9°121.0°
C5'C4'C3'O3'76.6°119.7°
C5'C4'C3'C2'163.1°121.6°
C5'C4'C3'H3'47.2°2.9°
C4'C5'H5'H5''119.1°120.0°
C4N9C1'O4'162.3°160.8°
C4N9C1'C2'78.6°85.0°
N9C4N3C2179.3°180.0°
C4N9C1'H142.7°37.9°
C4N9C8H8179.4°180.0°
C1'N9C4N32.0°0.0°
N9C1'O4'C4'124.4°158.6°
N9C1'O4'C2'123.6°118.6°
N9C1'O4'H1119.4°122.9°
N9C1'C2'C3'95.6°155.7°
N9C1'C2'H1121.9°122.8°
N9C1'C2'O2'150.3°86.1°
N9C1'C2'H2'24.0°37.5°
C1'N9C8H82.0°0.1°
N1C2N3C40.4°0.2°
N1C2N3H1'180.0°179.8°
C4N3C2H1'179.6°180.0°
O4'C4'C3'H4'115.6°119.4°
O4'C4'C3'O3'160.9°120.7°
O4'C4'C3'C2'40.7°2.0°
C4'O4'C1'C2'0.8°40.0°
C4'O4'C1'H1116.2°78.5°
O4'C4'C3'H3'75.3°116.7°
O4'C4'C5'H5'170.4°172.9°
O4'C4'C5'H5''70.2°52.9°
C1'O4'C4'C3'26.0°26.5°
O4'C1'C2'C3'24.6°37.0°
O4'C1'C2'H1118.0°118.5°
O4'C1'C2'O2'89.6°155.2°
O4'C1'C2'H2'144.2°81.2°
C1'O4'C4'H4'88.9°93.0°
C4'C3'O3'C2'113.4°114.8°
C4'C3'O3'H3'123.0°122.7°
C4'C3'C2'H3'115.8°118.8°
C4'C3'C2'C1'39.0°20.9°
C4'C3'C2'O2'75.5°139.1°
C4'C3'C2'H2'158.4°97.3°
C3'C4'C5'H5'51.8°55.0°
C3'C4'C5'H5''171.2°65.0°
C4'C3'O3'HO3'180.0°65.2°
O3'C3'C2'H3'124.3°122.5°
O3'C3'C2'C1'158.8°97.8°
O3'C3'C2'O2'44.3°20.4°
O3'C3'C2'H2'81.8°144.0°
O3'C3'C4'H4'45.3°1.3°
C3'C2'C1'O2'114.1°118.2°
C3'C2'C1'H2'119.6°118.2°
C3'C2'O2'H2'125.2°123.6°
C3'C2'O2'CA'130.6°97.3°
C3'C2'C1'H1142.6°81.5°
C2'C3'C4'H4'74.9°117.4°
C2'C3'O3'HO3'66.6°180.0°
C1'C2'O2'H2'125.2°123.6°
C1'C2'O2'CA'119.8°150.0°
C1'C2'C3'H3'76.9°139.7°
C2'O2'CA'CB'88.0°180.0°
O2'C2'C1'H128.4°36.7°
O2'C2'C3'H3'168.6°102.1°
C2'O2'CA'H932.1°60.0°
C2'O2'CA'H10152.0°60.0°
O2'CA'CB'H9120.0°119.9°
O2'CA'CB'H10120.0°120.0°
O2'CA'CB'OC'151.0°65.0°
CA'O2'C2'H2'5.4°26.3°
O2'CA'H9H10120.0°120.0°
O2'CA'CB'H1188.9°175.0°
O2'CA'CB'H1230.9°54.9°
CA'CB'OC'H11120.1°120.0°
CA'CB'OC'H12120.1°119.9°
CA'CB'OC'CD'163.6°180.0°
CB'CA'H9H10119.9°120.0°
CA'CB'H11H12119.7°120.0°
OC'CB'CA'H931.0°175.1°
OC'CB'CA'H1089.0°55.0°
OC'CB'H11H12119.7°120.0°
CB'OC'CD'H13180.0°60.0°
CB'OC'CD'H1460.0°60.0°
CB'OC'CD'H1560.0°180.0°
CD'OC'CB'H1176.3°60.0°
CD'OC'CB'H1243.5°60.1°
OC'CD'H13H14120.0°120.0°
OC'CD'H13H15120.0°120.0°
OC'CD'H14H15120.0°120.0°
H1C1'C2'H2'97.8°160.3°
H2'C2'C3'H3'42.5°21.5°
H3'C3'C4'H4'169.1°123.9°
H3'C3'O3'HO3'57.0°57.5°
H4'C4'C5'H5'70.0°66.0°
H4'C4'C5'H5''49.4°174.0°
H9CA'CB'H11151.1°55.0°
H9CA'CB'H1289.1°65.0°
H10CA'CB'H1131.1°65.0°
H10CA'CB'H12150.9°174.9°
H13CD'H14H15120.0°120.0°
HOP2OP2POP3129.2°60.0°

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon