K1F
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP1 | P | doub | 1.48Å | 1.48Å | |
OP2 | P | sing | 1.61Å | 1.48Å | |
P | O5' | sing | 1.61Å | 1.59Å | |
O3' | C3' | sing | 1.43Å | 1.43Å | |
C4' | C3' | sing | 1.54Å | 1.53Å | |
C4' | O4' | sing | 1.44Å | 1.46Å | |
C4' | C5' | sing | 1.53Å | 1.51Å | |
C3' | C2' | sing | 1.55Å | 1.52Å | |
O5' | C5' | sing | 1.43Å | 1.42Å | |
O4' | C1' | sing | 1.44Å | 1.41Å | |
O23 | C22 | doub | 1.22Å | 1.23Å | |
C1' | C2' | sing | 1.55Å | 1.52Å | |
C1' | N08 | sing | 1.46Å | 1.47Å | |
C2' | O2' | sing | 1.43Å | 1.41Å | |
N01 | C02 | sing | 1.35Å | 1.33Å | |
C22 | N08 | sing | 1.35Å | 1.34Å | |
C22 | C04 | sing | 1.47Å | 1.39Å | |
N08 | C07 | sing | 1.35Å | 1.40Å | |
C02 | C04 | sing | 1.48Å | 1.39Å | |
C02 | O03 | doub | 1.22Å | 1.23Å | |
C04 | N05 | doub | 1.32Å | 1.34Å | |
C07 | C06 | doub | 1.36Å | 1.39Å | |
N05 | C06 | sing | 1.32Å | 1.40Å | |
C06 | H1 | sing | 1.08Å | 1.08Å | |
C07 | H2 | sing | 1.08Å | 1.08Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'' | sing | 1.09Å | 1.10Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
N01 | H9 | sing | 0.97Å | 1.00Å | |
N01 | H10 | sing | 0.97Å | 1.00Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
P | OP3 | sing | 1.61Å | 1.61Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | OP2 | 119.7° | 109.5° |
OP1 | P | O5' | 108.3° | 109.5° |
OP1 | P | OP3 | 108.4° | 109.5° |
OP2 | P | O5' | 108.0° | 109.5° |
P | OP2 | HOP2 | 109.5° | 114.0° |
OP2 | P | OP3 | 107.3° | 109.5° |
P | O5' | C5' | 121.2° | 123.0° |
O5' | P | OP3 | 104.1° | 109.5° |
O3' | C3' | C4' | 108.5° | 110.5° |
O3' | C3' | C2' | 108.3° | 110.5° |
O3' | C3' | H3' | 113.6° | 110.6° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C3' | C4' | O4' | 105.6° | 107.3° |
C3' | C4' | C5' | 115.2° | 109.8° |
C4' | C3' | C2' | 101.5° | 104.2° |
C3' | C4' | H4' | 108.8° | 109.9° |
C4' | C3' | H3' | 112.0° | 110.5° |
O4' | C4' | C5' | 108.4° | 109.8° |
C4' | O4' | C1' | 109.0° | 107.0° |
O4' | C4' | H4' | 109.8° | 109.9° |
C4' | C5' | O5' | 111.8° | 109.5° |
C5' | C4' | H4' | 109.0° | 110.0° |
C4' | C5' | H5' | 108.9° | 109.5° |
C4' | C5' | H5'' | 108.9° | 109.6° |
C3' | C2' | C1' | 100.2° | 102.1° |
C3' | C2' | O2' | 115.5° | 110.9° |
C2' | C3' | H3' | 112.1° | 110.5° |
C3' | C2' | H2' | 108.8° | 111.0° |
O5' | C5' | H5' | 108.9° | 109.5° |
O5' | C5' | H5'' | 108.9° | 109.4° |
O4' | C1' | C2' | 104.8° | 103.5° |
O4' | C1' | N08 | 109.4° | 110.6° |
O4' | C1' | H1' | 109.9° | 110.7° |
O23 | C22 | N08 | 119.2° | 120.8° |
O23 | C22 | C04 | 120.5° | 120.8° |
C2' | C1' | N08 | 115.1° | 110.6° |
C1' | C2' | O2' | 112.7° | 110.8° |
C2' | C1' | H1' | 108.5° | 110.7° |
C1' | C2' | H2' | 108.8° | 110.9° |
C1' | N08 | C22 | 119.4° | 120.3° |
C1' | N08 | C07 | 120.2° | 120.4° |
N08 | C1' | H1' | 109.1° | 110.6° |
O2' | C2' | H2' | 110.3° | 110.8° |
C2' | O2' | HO2' | 109.5° | 113.9° |
N01 | C02 | C04 | 114.9° | 120.0° |
N01 | C02 | O03 | 124.0° | 120.0° |
C02 | N01 | H9 | 120.0° | 120.0° |
C02 | N01 | H10 | 120.0° | 120.0° |
N08 | C22 | C04 | 120.3° | 118.4° |
C22 | N08 | C07 | 120.4° | 119.3° |
C22 | C04 | C02 | 119.5° | 120.5° |
C22 | C04 | N05 | 120.7° | 119.0° |
N08 | C07 | C06 | 119.2° | 121.1° |
N08 | C07 | H2 | 120.4° | 119.5° |
C04 | C02 | O03 | 121.1° | 120.0° |
C02 | C04 | N05 | 119.8° | 120.5° |
C04 | N05 | C06 | 120.2° | 120.6° |
C07 | C06 | N05 | 119.3° | 121.7° |
C07 | C06 | H1 | 120.4° | 119.2° |
C06 | C07 | H2 | 120.4° | 119.5° |
N05 | C06 | H1 | 120.4° | 119.2° |
H5' | C5' | H5'' | 109.5° | 109.4° |
H9 | N01 | H10 | 120.0° | 120.0° |
P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | OP2 | O5' | 124.4° | 120.0° |
OP1 | P | OP2 | OP3 | 124.0° | 120.0° |
OP1 | P | O5' | OP3 | 115.2° | 120.0° |
OP1 | P | O5' | C5' | 83.9° | 55.0° |
OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
OP1 | P | OP3 | HOP3 | 0.0° | 59.9° |
OP2 | P | O5' | OP3 | 113.8° | 120.0° |
OP2 | P | O5' | C5' | 145.2° | 65.0° |
OP2 | P | OP3 | HOP3 | 130.6° | 60.1° |
P | O5' | C5' | C4' | 71.1° | 180.0° |
P | O5' | C5' | H5' | 49.3° | 60.0° |
P | O5' | C5' | H5'' | 168.6° | 60.0° |
O5' | P | OP2 | HOP2 | 124.3° | 60.0° |
O5' | P | OP3 | HOP3 | 115.1° | 179.9° |
O3' | C3' | C4' | C2' | 114.0° | 118.7° |
O3' | C3' | C4' | H3' | 126.2° | 122.7° |
O3' | C3' | C4' | O4' | 87.0° | 120.7° |
O3' | C3' | C4' | C5' | 153.5° | 119.9° |
O3' | C3' | C2' | H3' | 126.2° | 122.7° |
O3' | C3' | C2' | C1' | 73.4° | 97.8° |
O3' | C3' | C2' | O2' | 47.9° | 20.4° |
O3' | C3' | C4' | H4' | 30.8° | 1.3° |
O3' | C3' | C2' | H2' | 172.6° | 144.0° |
C3' | C4' | O4' | C5' | 123.9° | 119.4° |
C3' | C4' | O4' | H4' | 117.1° | 119.5° |
C3' | C4' | C5' | H4' | 122.6° | 121.1° |
C4' | C3' | C2' | H3' | 119.7° | 118.7° |
C3' | C4' | C5' | O5' | 175.4° | 175.0° |
C3' | C4' | O4' | C1' | 1.3° | 26.6° |
C4' | C3' | C2' | C1' | 40.7° | 20.9° |
C4' | C3' | C2' | O2' | 162.0° | 139.0° |
C3' | C4' | C5' | H5' | 64.3° | 55.0° |
C3' | C4' | C5' | H5'' | 55.0° | 65.0° |
C4' | C3' | C2' | H2' | 73.3° | 97.3° |
C4' | C3' | O3' | HO3' | 180.0° | 179.9° |
O4' | C4' | C5' | H4' | 119.5° | 121.1° |
O4' | C4' | C3' | C2' | 27.0° | 2.1° |
O4' | C4' | C5' | O5' | 57.5° | 67.2° |
C4' | O4' | C1' | C2' | 25.3° | 40.1° |
C4' | O4' | C1' | N08 | 149.1° | 158.6° |
C4' | O4' | C1' | H1' | 91.0° | 78.5° |
O4' | C4' | C5' | H5' | 177.8° | 172.8° |
O4' | C4' | C5' | H5'' | 62.9° | 52.8° |
O4' | C4' | C3' | H3' | 146.8° | 116.6° |
C5' | C4' | C3' | C2' | 92.5° | 121.4° |
C4' | C5' | O5' | H5' | 120.4° | 120.0° |
C4' | C5' | O5' | H5'' | 120.4° | 120.1° |
C5' | C4' | O4' | C1' | 122.6° | 145.9° |
C4' | C5' | H5' | H5'' | 119.0° | 120.1° |
C5' | C4' | C3' | H3' | 27.3° | 2.8° |
C3' | C2' | C1' | O4' | 41.4° | 37.1° |
C3' | C2' | C1' | O2' | 123.4° | 118.2° |
C3' | C2' | C1' | H2' | 114.0° | 118.3° |
C3' | C2' | C1' | N08 | 161.6° | 155.5° |
C3' | C2' | O2' | H2' | 123.8° | 123.7° |
C3' | C2' | C1' | H1' | 75.9° | 81.6° |
C2' | C3' | C4' | H4' | 144.8° | 117.4° |
C2' | C3' | O3' | HO3' | 70.6° | 65.2° |
C3' | C2' | O2' | HO2' | 180.0° | 67.4° |
O5' | C5' | C4' | H4' | 62.0° | 53.9° |
O5' | C5' | H5' | H5'' | 118.9° | 119.9° |
C5' | O5' | P | OP3 | 31.4° | 175.0° |
O4' | C1' | C2' | N08 | 120.1° | 118.4° |
O4' | C1' | C2' | H1' | 117.4° | 118.6° |
O4' | C1' | N08 | H1' | 120.3° | 123.0° |
O4' | C1' | C2' | O2' | 164.8° | 155.2° |
O4' | C1' | N08 | C22 | 91.2° | 130.9° |
O4' | C1' | N08 | C07 | 88.0° | 49.1° |
C1' | O4' | C4' | H4' | 118.4° | 92.9° |
O4' | C1' | C2' | H2' | 72.6° | 81.2° |
O23 | C22 | N08 | C1' | 0.6° | 0.0° |
O23 | C22 | N08 | C04 | 179.6° | 180.0° |
O23 | C22 | N08 | C07 | 179.7° | 180.0° |
O23 | C22 | C04 | C02 | 0.1° | 0.1° |
O23 | C22 | C04 | N05 | 179.9° | 179.7° |
C2' | C1' | N08 | H1' | 122.2° | 123.0° |
C1' | C2' | O2' | H2' | 121.8° | 123.6° |
C2' | C1' | N08 | C22 | 151.3° | 115.0° |
C2' | C1' | N08 | C07 | 29.6° | 65.0° |
C1' | C2' | C3' | H3' | 160.3° | 139.6° |
C1' | C2' | O2' | HO2' | 65.6° | 180.0° |
N08 | C1' | C2' | O2' | 75.1° | 86.3° |
C1' | N08 | C22 | C07 | 179.1° | 180.0° |
C1' | N08 | C22 | C04 | 179.8° | 180.0° |
C1' | N08 | C07 | C06 | 179.9° | 179.7° |
C1' | N08 | C07 | H2 | 0.2° | 0.3° |
N08 | C1' | C2' | H2' | 47.5° | 37.2° |
O2' | C2' | C1' | H1' | 47.5° | 36.6° |
O2' | C2' | C3' | H3' | 78.3° | 102.3° |
N01 | C02 | C04 | C22 | 1.7° | 179.5° |
N01 | C02 | C04 | O03 | 180.0° | 179.7° |
N01 | C02 | C04 | N05 | 178.2° | 0.3° |
C02 | N01 | H9 | H10 | 180.0° | 179.9° |
N08 | C22 | C04 | C02 | 179.7° | 180.0° |
N08 | C22 | C04 | N05 | 0.4° | 0.2° |
C22 | N08 | C07 | C06 | 0.7° | 0.3° |
C22 | N08 | C07 | H2 | 179.3° | 179.7° |
C22 | N08 | C1' | H1' | 29.1° | 7.9° |
C04 | C22 | N08 | C07 | 0.7° | 0.0° |
C22 | C04 | C02 | N05 | 179.9° | 179.8° |
C22 | C04 | C02 | O03 | 178.3° | 0.2° |
C22 | C04 | N05 | C06 | 0.1° | 0.2° |
N08 | C07 | C06 | H2 | 180.0° | 180.0° |
N08 | C07 | C06 | N05 | 0.4° | 0.3° |
N08 | C07 | C06 | H1 | 179.6° | 180.0° |
C07 | N08 | C1' | H1' | 151.7° | 172.1° |
C02 | C04 | N05 | C06 | 180.0° | 180.0° |
C04 | C02 | N01 | H9 | 180.0° | 0.0° |
C04 | C02 | N01 | H10 | 0.0° | 179.9° |
O03 | C02 | C04 | N05 | 1.8° | 180.0° |
O03 | C02 | N01 | H9 | 0.0° | 179.7° |
O03 | C02 | N01 | H10 | 180.0° | 0.2° |
C04 | N05 | C06 | C07 | 0.1° | 0.1° |
C04 | N05 | C06 | H1 | 179.9° | 179.7° |
C07 | C06 | N05 | H1 | 180.0° | 179.7° |
N05 | C06 | C07 | H2 | 179.6° | 179.7° |
H1 | C06 | C07 | H2 | 0.4° | 0.0° |
H1' | C1' | C2' | H2' | 170.1° | 160.2° |
H4' | C4' | C5' | H5' | 58.3° | 66.1° |
H4' | C4' | C5' | H5'' | 177.6° | 173.9° |
H4' | C4' | C3' | H3' | 95.5° | 123.9° |
H3' | C3' | C2' | H2' | 46.3° | 21.3° |
H3' | C3' | O3' | HO3' | 54.8° | 57.4° |
H2' | C2' | O2' | HO2' | 56.2° | 56.4° |
HOP2 | OP2 | P | OP3 | 124.0° | 60.0° |