JZR

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O1	sing	1.43Å	1.44Å
C1	C2	sing	1.53Å	1.54Å
C1	O5	sing	1.43Å	1.43Å
O1	C1'	sing	1.43Å	1.44Å
C2	O2	sing	1.43Å	1.44Å
C2	C3	sing	1.53Å	1.53Å
C3	O3	sing	1.43Å	1.44Å
C3	C4	sing	1.53Å	1.52Å
C4	O4	sing	1.43Å	1.43Å
C4	C5	sing	1.53Å	1.53Å
C5	O5	sing	1.43Å	1.43Å
C5	C6	sing	1.53Å	1.53Å
C6	O6	sing	1.43Å	1.43Å
C1'	C2'	sing	1.53Å	1.53Å
C2'	C3'	sing	1.53Å	1.53Å
C3'	C4'	sing	1.53Å	1.53Å
C4'	C5'	sing	1.53Å	1.53Å
C5'	C6'	sing	1.53Å	1.52Å
C1	H1	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C3	H3	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C4	H4	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
C5	H5	sing	1.09Å	1.10Å
C6	H61	sing	1.09Å	1.10Å
C6	H62	sing	1.09Å	1.10Å
O6	HO6	sing	0.97Å	0.95Å
C1'	H1'	sing	1.09Å	1.10Å
C1'	H1'A	sing	1.09Å	1.10Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2'A	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
C3'	H3'A	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C4'	H4'A	sing	1.09Å	1.10Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
C6'	H6'	sing	1.09Å	1.10Å
C6'	H6'A	sing	1.09Å	1.10Å
C6'	H6'B	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C2	112.8°	109.5°
O1	C1	O5	110.1°	109.5°
C1	O1	C1'	115.8°	114.0°
O1	C1	H1	106.4°	109.5°
C2	C1	O5	108.2°	109.4°
C1	C2	O2	112.7°	109.5°
C1	C2	C3	110.4°	109.2°
C2	C1	H1	108.3°	109.5°
C1	C2	H2	106.3°	109.6°
C1	O5	C5	113.6°	114.1°
O5	C1	H1	111.1°	109.5°
O1	C1'	C2'	112.0°	109.5°
O1	C1'	H1'	108.7°	109.5°
O1	C1'	H1'A	108.6°	109.5°
O2	C2	C3	108.6°	109.5°
O2	C2	H2	108.3°	109.5°
C2	O2	HO2	109.5°	114.0°
C2	C3	O3	111.6°	109.6°
C2	C3	C4	109.4°	109.0°
C3	C2	H2	110.6°	109.6°
C2	C3	H3	108.3°	109.6°
O3	C3	C4	109.9°	109.5°
O3	C3	H3	107.7°	109.6°
C3	O3	HO3	109.5°	114.0°
C3	C4	O4	111.1°	109.5°
C3	C4	C5	108.1°	109.2°
C4	C3	H3	110.0°	109.6°
C3	C4	H4	110.1°	109.5°
O4	C4	C5	111.7°	109.5°
O4	C4	H4	106.4°	109.5°
C4	O4	HO4	109.5°	114.0°
C4	C5	O5	107.8°	109.4°
C4	C5	C6	114.0°	109.5°
C5	C4	H4	109.5°	109.6°
C4	C5	H5	107.6°	109.5°
O5	C5	C6	109.6°	109.5°
O5	C5	H5	112.1°	109.5°
C5	C6	O6	110.8°	109.5°
C6	C5	H5	105.7°	109.5°
C5	C6	H61	109.1°	109.4°
C5	C6	H62	109.1°	109.5°
O6	C6	H61	109.0°	109.5°
O6	C6	H62	109.0°	109.5°
C6	O6	HO6	109.5°	114.1°
C1'	C2'	C3'	113.3°	109.5°
C2'	C1'	H1'	108.6°	109.5°
C2'	C1'	H1'A	108.6°	109.5°
C1'	C2'	H2'	108.2°	109.4°
C1'	C2'	H2'A	108.2°	109.4°
C2'	C3'	C4'	114.2°	109.5°
C3'	C2'	H2'	108.3°	109.5°
C3'	C2'	H2'A	108.2°	109.5°
C2'	C3'	H3'	107.9°	109.5°
C2'	C3'	H3'A	107.9°	109.5°
C3'	C4'	C5'	110.9°	109.5°
C4'	C3'	H3'	108.0°	109.5°
C4'	C3'	H3'A	107.9°	109.5°
C3'	C4'	H4'	109.0°	109.5°
C3'	C4'	H4'A	109.0°	109.5°
C4'	C5'	C6'	112.6°	109.4°
C5'	C4'	H4'	109.0°	109.5°
C5'	C4'	H4'A	109.0°	109.5°
C4'	C5'	H5'	108.5°	109.5°
C4'	C5'	H5'A	108.5°	109.5°
C6'	C5'	H5'	108.4°	109.4°
C6'	C5'	H5'A	108.4°	109.4°
C5'	C6'	H6'	109.5°	109.5°
C5'	C6'	H6'A	109.4°	109.5°
C5'	C6'	H6'B	109.5°	109.5°
H61	C6	H62	109.9°	109.4°
H1'	C1'	H1'A	110.3°	109.4°
H2'	C2'	H2'A	110.7°	109.5°
H3'	C3'	H3'A	111.0°	109.4°
H4'	C4'	H4'A	109.9°	109.4°
H5'	C5'	H5'A	110.5°	109.6°
H6'	C6'	H6'A	109.5°	109.5°
H6'	C6'	H6'B	109.4°	109.4°
H6'A	C6'	H6'B	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C2	O5	122.0°	120.0°
O1	C1	C2	H1	117.4°	120.0°
O1	C1	O5	H1	117.5°	120.0°
O1	C1	C2	O2	61.5°	62.5°
O1	C1	C2	C3	176.9°	177.6°
O1	C1	O5	C5	174.4°	178.8°
C1	O1	C1'	C2'	115.9°	180.0°
O1	C1	C2	H2	56.9°	57.6°
C1	O1	C1'	H1'	4.1°	60.0°
C1	O1	C1'	H1'A	124.0°	60.0°
C2	C1	O5	H1	118.8°	120.0°
C2	C1	O1	C1'	159.6°	175.0°
C1	C2	O2	C3	122.6°	119.7°
C1	C2	O2	H2	117.3°	120.2°
C1	C2	C3	H2	117.4°	120.0°
C1	C2	C3	O3	176.9°	176.8°
C1	C2	C3	C4	55.1°	57.0°
C2	C1	O5	C5	61.9°	61.2°
C1	C2	O2	HO2	180.0°	60.0°
C1	C2	C3	H3	64.8°	62.9°
O5	C1	O1	C1'	38.6°	65.1°
O5	C1	C2	O2	176.5°	177.5°
O5	C1	C2	C3	54.8°	57.6°
C1	O5	C5	C4	66.1°	61.2°
C1	O5	C5	C6	169.3°	178.8°
O5	C1	C2	H2	65.1°	62.4°
C1	O5	C5	H5	52.2°	58.8°
O1	C1'	C2'	H1'	120.0°	120.0°
O1	C1'	C2'	H1'A	120.0°	120.0°
O1	C1'	C2'	C3'	98.1°	180.0°
C1'	O1	C1	H1	81.9°	55.0°
O1	C1'	H1'	H1'A	118.9°	120.0°
O1	C1'	C2'	H2'	21.9°	60.0°
O1	C1'	C2'	H2'A	141.9°	60.0°
O2	C2	C3	H2	118.6°	120.1°
O2	C2	C3	O3	59.1°	63.3°
O2	C2	C3	C4	179.0°	176.9°
O2	C2	C1	H1	55.9°	57.5°
O2	C2	C3	H3	59.2°	56.9°
C2	C3	O3	C4	121.5°	119.5°
C2	C3	O3	H3	118.7°	120.3°
C2	C3	C4	H3	118.8°	119.9°
C2	C3	C4	O4	179.3°	176.9°
C2	C3	C4	C5	57.9°	57.0°
C3	C2	C1	H1	65.7°	62.3°
C3	C2	O2	HO2	57.4°	179.7°
C2	C3	O3	HO3	180.0°	60.0°
C2	C3	C4	H4	61.7°	63.0°
O3	C3	C4	H3	118.4°	120.2°
O3	C3	C4	O4	56.4°	63.2°
O3	C3	C4	C5	179.3°	176.9°
O3	C3	C2	H2	59.5°	56.8°
O3	C3	C4	H4	61.2°	56.9°
C3	C4	O4	C5	120.7°	119.7°
C3	C4	O4	H4	119.8°	120.1°
C3	C4	C5	H4	119.9°	120.0°
C3	C4	C5	O5	61.8°	57.6°
C3	C4	C5	C6	176.3°	177.6°
C4	C3	C2	H2	62.3°	63.0°
C4	C3	O3	HO3	58.5°	179.5°
C3	C4	O4	HO4	180.0°	60.0°
C3	C4	C5	H5	59.4°	62.4°
O4	C4	C5	H4	117.6°	120.1°
O4	C4	C5	O5	175.8°	177.5°
O4	C4	C5	C6	53.8°	62.5°
O4	C4	C3	H3	61.9°	57.0°
O4	C4	C5	H5	63.1°	57.5°
C4	C5	O5	C6	124.7°	120.0°
C4	C5	O5	H5	118.3°	120.0°
C4	C5	C6	H5	118.0°	120.0°
C4	C5	C6	O6	27.6°	175.0°
C5	C4	C3	H3	60.9°	62.9°
C5	C4	O4	HO4	59.2°	179.7°
C4	C5	C6	H61	147.6°	55.0°
C4	C5	C6	H62	92.4°	64.9°
O5	C5	C6	H5	121.0°	120.0°
O5	C5	C6	O6	93.4°	65.1°
C5	O5	C1	H1	56.9°	58.8°
O5	C5	C4	H4	58.2°	62.3°
O5	C5	C6	H61	26.6°	174.9°
O5	C5	C6	H62	146.6°	55.0°
C5	C6	O6	H61	120.0°	120.0°
C5	C6	O6	H62	120.0°	120.1°
C6	C5	C4	H4	63.8°	57.6°
C5	C6	H61	H62	119.5°	120.0°
C5	C6	O6	HO6	180.0°	180.0°
O6	C6	C5	H5	145.6°	55.0°
O6	C6	H61	H62	119.4°	120.0°
C1'	C2'	C3'	H2'	120.0°	119.9°
C1'	C2'	C3'	H2'A	120.0°	120.0°
C1'	C2'	C3'	C4'	124.4°	180.0°
C2'	C1'	H1'	H1'A	118.9°	120.0°
C1'	C2'	H2'	H2'A	118.4°	120.0°
C1'	C2'	C3'	H3'	4.4°	60.0°
C1'	C2'	C3'	H3'A	115.6°	60.0°
C2'	C3'	C4'	H3'	120.0°	120.0°
C2'	C3'	C4'	H3'A	120.0°	120.0°
C2'	C3'	C4'	C5'	159.4°	180.0°
C3'	C2'	C1'	H1'	141.9°	60.0°
C3'	C2'	C1'	H1'A	21.9°	60.0°
C3'	C2'	H2'	H2'A	118.5°	120.1°
C2'	C3'	H3'	H3'A	118.1°	120.0°
C2'	C3'	C4'	H4'	39.4°	60.0°
C2'	C3'	C4'	H4'A	80.6°	60.0°
C3'	C4'	C5'	H4'	120.0°	120.0°
C3'	C4'	C5'	H4'A	120.0°	120.0°
C3'	C4'	C5'	C6'	175.3°	180.0°
C4'	C3'	C2'	H2'	115.6°	60.1°
C4'	C3'	C2'	H2'A	4.4°	60.0°
C4'	C3'	H3'	H3'A	118.1°	120.0°
C3'	C4'	H4'	H4'A	119.4°	120.0°
C3'	C4'	C5'	H5'	55.3°	60.1°
C3'	C4'	C5'	H5'A	64.7°	60.1°
C4'	C5'	C6'	H5'	120.0°	120.0°
C4'	C5'	C6'	H5'A	120.0°	120.0°
C5'	C4'	C3'	H3'	80.6°	60.0°
C5'	C4'	C3'	H3'A	39.4°	60.0°
C5'	C4'	H4'	H4'A	119.4°	120.0°
C4'	C5'	H5'	H5'A	118.7°	120.1°
C4'	C5'	C6'	H6'	180.0°	180.0°
C4'	C5'	C6'	H6'A	60.0°	60.0°
C4'	C5'	C6'	H6'B	60.0°	60.0°
C6'	C5'	C4'	H4'	64.7°	60.0°
C6'	C5'	C4'	H4'A	55.3°	60.0°
C6'	C5'	H5'	H5'A	118.7°	120.0°
C5'	C6'	H6'	H6'A	120.0°	120.1°
C5'	C6'	H6'	H6'B	120.0°	120.0°
C5'	C6'	H6'A	H6'B	120.0°	120.0°
H1	C1	C2	H2	174.3°	177.6°
H2	C2	O2	HO2	62.7°	60.1°
H2	C2	C3	H3	177.8°	177.1°
H3	C3	O3	HO3	61.3°	60.2°
H3	C3	C4	H4	179.6°	177.1°
H4	C4	O4	HO4	60.2°	60.1°
H4	C4	C5	H5	179.3°	177.7°
H5	C5	C6	H61	94.4°	65.1°
H5	C5	C6	H62	25.6°	175.0°
H61	C6	O6	HO6	60.0°	60.0°
H62	C6	O6	HO6	60.0°	59.9°
H1'	C1'	C2'	H2'	98.1°	180.0°
H1'	C1'	C2'	H2'A	21.9°	60.0°
H1'A	C1'	C2'	H2'	141.9°	60.0°
H1'A	C1'	C2'	H2'A	98.1°	180.0°
H2'	C2'	C3'	H3'	124.4°	179.9°
H2'	C2'	C3'	H3'A	4.4°	59.9°
H2'A	C2'	C3'	H3'	115.6°	60.0°
H2'A	C2'	C3'	H3'A	124.4°	180.0°
H3'	C3'	C4'	H4'	159.4°	180.0°
H3'	C3'	C4'	H4'A	39.4°	60.0°
H3'A	C3'	C4'	H4'	80.6°	60.0°
H3'A	C3'	C4'	H4'A	159.4°	180.0°
H4'	C4'	C5'	H5'	175.3°	179.9°
H4'	C4'	C5'	H5'A	55.3°	60.0°
H4'A	C4'	C5'	H5'	64.7°	59.9°
H4'A	C4'	C5'	H5'A	175.3°	179.9°
H5'	C5'	C6'	H6'	60.0°	60.0°
H5'	C5'	C6'	H6'A	180.0°	180.0°
H5'	C5'	C6'	H6'B	60.0°	60.0°
H5'A	C5'	C6'	H6'	60.0°	60.1°
H5'A	C5'	C6'	H6'A	60.0°	60.0°
H5'A	C5'	C6'	H6'B	180.0°	180.0°
H6'	C6'	H6'A	H6'B	120.0°	120.0°

Definition date:	2009-11-11
Last modified:	2020-07-17
Release status:	REL
Processing site:	RCSB
Derived from:	3K22