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SummaryGeometryRelated PDB entries

JYI

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CABCBDsing1.53Å1.53Å
CAACBDsing1.53Å1.50Å
CBDCATsing1.53Å1.58Å
CBDCBCsing1.51Å1.55Å
CATCAHsing1.50Å1.37Å
CAHCAVdoub1.34Å1.41Å
CBCCAQdoub1.38Å1.39ÅAromatic
CBCCBBsing1.40Å1.40ÅAromatic
CAQCALsing1.38Å1.39ÅAromatic
CAVCBBsing1.48Å1.44Å
CAVCAYsing1.48Å1.38Å
CBBCASdoub1.39Å1.40ÅAromatic
CALCAWdoub1.40Å1.37ÅAromatic
CAYCAMdoub1.39Å1.40ÅAromatic
CAYCANsing1.39Å1.40ÅAromatic
CAMCAJsing1.38Å1.39ÅAromatic
CASCAWsing1.40Å1.38ÅAromatic
CAWCAFsing1.47Å1.42Å
CANCAKdoub1.38Å1.40ÅAromatic
CAJCAIdoub1.38Å1.39ÅAromatic
CAFCAGdoub1.34Å1.40Å
CAKCAIsing1.38Å1.40ÅAromatic
CAGCBAsing1.47Å1.44Å
CBACAPdoub1.40Å1.39ÅAromatic
CBACAXsing1.40Å1.41ÅAromatic
CAPCAOsing1.37Å1.43ÅAromatic
CLCAXsing1.74Å1.72Å
CAXCARdoub1.38Å1.43ÅAromatic
CAOCAZdoub1.40Å1.41ÅAromatic
CARCAZsing1.40Å1.40ÅAromatic
CAZCAUsing1.47Å1.56Å
CAUOACdoub1.22Å1.24Å
CAUOADsing1.35Å1.27Å
CAMH1sing1.08Å1.08Å
CAJH2sing1.08Å1.08Å
CAIH3sing1.08Å1.08Å
CAKH4sing1.08Å1.08Å
CANH5sing1.08Å1.08Å
CASH6sing1.08Å1.08Å
CAHH7sing1.08Å1.08Å
CATH8sing1.09Å1.10Å
CATH9sing1.09Å1.10Å
CAAH10sing1.09Å1.10Å
CAAH11sing1.09Å1.10Å
CAAH12sing1.09Å1.10Å
CABH13sing1.09Å1.10Å
CABH14sing1.09Å1.10Å
CABH15sing1.09Å1.10Å
CAQH16sing1.08Å1.08Å
CALH17sing1.08Å1.08Å
CAFH18sing1.08Å1.08Å
CAGH19sing1.08Å1.08Å
CAPH20sing1.08Å1.08Å
CAOH21sing1.08Å1.08Å
OADH22sing0.97Å0.95Å
CARH23sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CABCBDCAA109.3°109.3°
CABCBDCAT103.9°109.4°
CABCBDCBC112.1°109.4°
CBDCABH13109.5°109.4°
CBDCABH14109.5°109.4°
CBDCABH15109.5°109.5°
CAACBDCAT112.8°109.4°
CAACBDCBC110.0°109.2°
CBDCAAH10109.5°109.5°
CBDCAAH11109.5°109.5°
CBDCAAH12109.4°109.4°
CATCBDCBC108.7°110.1°
CBDCATCAH113.8°110.7°
CBDCATH8108.4°109.3°
CBDCATH9108.4°109.2°
CBDCBCCAQ123.5°120.6°
CBDCBCCBB117.2°119.4°
CATCAHCAV119.8°120.8°
CATCAHH7120.1°119.5°
CAHCATH8108.4°109.2°
CAHCATH9108.4°109.3°
CAHCAVCBB120.6°119.2°
CAHCAVCAY115.4°120.4°
CAVCAHH7120.1°119.6°
CAQCBCCBB119.3°120.1°
CBCCAQCAL118.2°120.2°
CBCCAQH16120.9°119.9°
CBCCBBCAV118.9°119.0°
CBCCBBCAS120.1°120.2°
CAQCALCAW123.8°120.3°
CALCAQH16120.9°119.9°
CAQCALH17118.1°119.8°
CBBCAVCAY124.0°120.4°
CAVCBBCAS121.0°120.8°
CAVCAYCAM117.7°120.1°
CAVCAYCAN120.4°120.1°
CBBCASCAW121.1°119.5°
CBBCASH6119.4°120.2°
CALCAWCAS117.4°119.8°
CALCAWCAF119.9°120.2°
CAWCALH17118.1°119.9°
CAMCAYCAN122.0°119.7°
CAYCAMCAJ118.6°119.9°
CAYCAMH1120.7°120.1°
CAYCANCAK119.2°119.9°
CAYCANH5120.4°120.1°
CAMCAJCAI119.4°120.1°
CAJCAMH1120.7°120.1°
CAMCAJH2120.3°120.0°
CASCAWCAF122.5°120.1°
CAWCASH6119.5°120.3°
CAWCAFCAG125.2°120.0°
CAWCAFH18117.4°120.1°
CANCAKCAI118.3°120.1°
CANCAKH4120.9°120.0°
CAKCANH5120.4°120.0°
CAJCAICAK122.6°120.2°
CAICAJH2120.3°119.9°
CAJCAIH3118.7°119.9°
CAFCAGCBA122.6°120.0°
CAGCAFH18117.4°119.9°
CAFCAGH19118.7°120.0°
CAKCAIH3118.7°119.9°
CAICAKH4120.8°120.0°
CAGCBACAP125.4°120.0°
CAGCBACAX119.2°120.0°
CBACAGH19118.7°120.0°
CAPCBACAX115.4°120.0°
CBACAPCAO122.4°120.1°
CBACAPH20118.8°120.0°
CBACAXCL117.5°120.1°
CBACAXCAR123.9°119.8°
CAPCAOCAZ120.5°120.2°
CAOCAPH20118.8°120.0°
CAPCAOH21119.8°119.9°
CLCAXCAR118.6°120.1°
CAXCARCAZ119.0°119.9°
CAXCARH23120.5°120.1°
CAOCAZCAR118.8°120.0°
CAOCAZCAU123.2°120.0°
CAZCAOH21119.8°119.9°
CARCAZCAU118.0°120.0°
CAZCARH23120.5°120.1°
CAZCAUOAC120.4°120.0°
CAZCAUOAD118.0°120.0°
OACCAUOAD121.5°120.0°
CAUOADH22109.5°117.0°
H8CATH9109.4°109.1°
H10CAAH11109.5°109.5°
H10CAAH12109.5°109.5°
H11CAAH12109.5°109.5°
H13CABH14109.4°109.5°
H13CABH15109.4°109.5°
H14CABH15109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CABCBDCAACAT115.1°119.8°
CABCBDCAACBC123.4°119.7°
CABCBDCATCBC119.5°120.3°
CABCBDCATCAH170.2°171.0°
CABCBDCBCCAQ31.6°24.9°
CABCBDCBCCBB148.0°154.7°
CABCBDCATH869.2°50.6°
CABCBDCATH949.5°68.7°
CABCBDCAAH10180.0°179.8°
CABCBDCAAH1160.0°60.2°
CABCBDCAAH1260.0°59.8°
CBDCABH13H14120.0°119.9°
CBDCABH13H15120.0°120.0°
CBDCABH14H15120.0°120.0°
CAACBDCATCBC122.2°120.0°
CAACBDCATCAH71.6°69.3°
CAACBDCBCCAQ90.1°94.7°
CAACBDCBCCBB90.3°85.7°
CAACBDCATH849.1°170.3°
CAACBDCATH9167.8°51.0°
CBDCAAH10H11120.0°120.0°
CBDCAAH10H12120.0°120.0°
CBDCAAH11H12120.0°120.0°
CAACBDCABH13180.0°59.7°
CAACBDCABH1460.0°60.2°
CAACBDCABH1560.0°179.8°
CBDCATCAHH8120.7°120.4°
CBDCATCAHH9120.6°120.3°
CBDCATCAHCAV31.8°36.0°
CATCBDCBCCAQ145.9°145.2°
CATCBDCBCCBB33.7°34.5°
CBDCATCAHH7148.2°144.1°
CBDCATH8H9118.0°119.3°
CATCBDCAAH1065.0°60.0°
CATCBDCAAH11175.0°180.0°
CATCBDCAAH1255.1°60.0°
CATCBDCABH1359.3°60.1°
CATCBDCABH1460.7°180.0°
CATCBDCABH15179.3°60.0°
CBCCBDCATCAH50.7°50.7°
CBDCBCCAQCBB179.6°179.6°
CBDCBCCAQCAL176.4°179.9°
CBDCBCCBBCAV1.4°0.4°
CBDCBCCBBCAS177.2°179.6°
CBCCBDCATH8171.3°69.7°
CBCCBDCATH970.0°171.0°
CBCCBDCAAH1056.6°60.5°
CBCCBDCAAH1163.4°59.5°
CBCCBDCAAH12176.6°179.5°
CBCCBDCABH1357.9°179.3°
CBCCBDCABH14177.9°59.3°
CBCCBDCABH1562.1°60.7°
CBDCBCCAQH163.6°0.1°
CATCAHCAVH7180.0°179.9°
CATCAHCAVCBB6.9°0.5°
CATCAHCAVCAY175.5°179.3°
CAHCATH8H9118.1°119.4°
CAHCAVCBBCBC25.1°19.3°
CAHCAVCBBCAY177.4°179.8°
CAHCAVCBBCAS153.4°160.6°
CAHCAVCAYCAM36.4°64.8°
CAHCAVCAYCAN142.1°114.7°
CAVCAHCATH8152.4°84.4°
CAVCAHCATH988.9°156.3°
CBCCAQCALH16180.0°180.0°
CAQCBCCBBCAV178.9°180.0°
CAQCBCCBBCAS2.5°0.1°
CBCCAQCALCAW3.7°1.0°
CBCCAQCALH17176.3°179.9°
CBBCBCCAQCAL3.2°0.4°
CBCCBBCAVCAS178.6°180.0°
CBCCBBCAVCAY157.4°160.9°
CBCCBBCASCAW2.1°0.0°
CBCCBBCASH6177.9°180.0°
CBBCBCCAQH16176.8°179.5°
CAQCALCAWH17180.0°178.9°
CAQCALCAWCAS3.3°1.1°
CAQCALCAWCAF179.5°179.4°
CBBCAVCAYCAM141.2°115.0°
CBBCAVCAYCAN40.3°65.5°
CAVCBBCASCAW179.4°180.0°
CAVCBBCASH60.6°0.1°
CBBCAVCAHH7173.1°179.6°
CAYCAVCBBCAS24.0°19.2°
CAVCAYCAMCAN178.5°179.5°
CAVCAYCAMCAJ179.5°180.0°
CAVCAYCANCAK179.3°180.0°
CAVCAYCAMH10.5°0.2°
CAVCAYCANH50.7°0.2°
CAYCAVCAHH74.5°0.6°
CBBCASCAWCAL2.4°0.6°
CBBCASCAWH6180.0°180.0°
CBBCASCAWCAF178.5°180.0°
CALCAWCASCAF176.1°179.5°
CALCAWCAFCAG159.7°0.5°
CALCAWCASH6177.6°179.4°
CAWCALCAQH16176.3°178.9°
CALCAWCAFH1820.3°179.4°
CAYCAMCAJH1180.0°179.8°
CAMCAYCANCAK2.3°0.5°
CAYCAMCAJCAI0.3°0.3°
CAYCAMCAJH2179.7°179.7°
CAMCAYCANH5177.7°179.7°
CANCAYCAMCAJ2.1°0.6°
CAYCANCAKH5180.0°179.8°
CAYCANCAKCAI0.8°0.2°
CANCAYCAMH1177.9°179.7°
CAYCANCAKH4179.2°179.7°
CAMCAJCAIH2180.0°180.0°
CAMCAJCAICAK1.3°0.0°
CAMCAJCAIH3178.7°180.0°
CASCAWCAFCAG16.3°180.0°
CASCAWCALH17176.7°180.0°
CASCAWCAFH18163.7°0.1°
CAWCAFCAGH18180.0°179.9°
CAWCAFCAGCBA173.0°180.0°
CAFCAWCASH61.5°0.1°
CAFCAWCALH170.5°0.6°
CAWCAFCAGH197.0°0.1°
CANCAKCAICAJ1.0°0.1°
CANCAKCAIH4180.0°179.9°
CANCAKCAIH3179.0°180.0°
CAJCAICAKH3180.0°180.0°
CAICAJCAMH1179.7°180.0°
CAJCAICAKH4179.0°180.0°
CAFCAGCBAH19180.0°180.0°
CAFCAGCBACAP20.1°0.0°
CAFCAGCBACAX158.9°179.7°
CAKCAICAJH2178.7°179.9°
CAICAKCANH5179.2°180.0°
CAGCBACAPCAX179.1°179.7°
CAGCBACAPCAO179.7°180.0°
CAGCBACAXCL1.7°0.0°
CAGCBACAXCAR179.7°179.7°
CBACAGCAFH187.0°0.0°
CAGCBACAPH200.3°0.0°
CBACAPCAOH20180.0°180.0°
CAPCBACAXCL177.4°179.7°
CAPCBACAXCAR1.1°0.6°
CBACAPCAOCAZ1.6°0.0°
CAPCBACAGH19159.9°180.0°
CBACAPCAOH21178.4°180.0°
CAXCBACAPCAO0.6°0.3°
CBACAXCLCAR178.6°179.7°
CBACAXCARCAZ2.6°0.5°
CAXCBACAGH1921.1°0.3°
CAXCBACAPH20179.4°179.7°
CBACAXCARH23177.4°179.7°
CAPCAOCAZH21180.0°180.0°
CAPCAOCAZCAR3.0°0.1°
CAPCAOCAZCAU178.1°180.0°
CLCAXCARCAZ175.9°179.8°
CLCAXCARH234.1°0.0°
CAXCARCAZCAO3.4°0.2°
CAXCARCAZH23180.0°179.7°
CAXCARCAZCAU177.6°179.7°
CAOCAZCARCAU179.0°179.9°
CAOCAZCAUOAC4.1°0.1°
CAOCAZCAUOAD174.9°180.0°
CAZCAOCAPH20178.4°180.0°
CAOCAZCARH23176.5°179.9°
CARCAZCAUOAC174.9°180.0°
CARCAZCAUOAD6.2°0.0°
CARCAZCAOH21177.0°180.0°
CAZCAUOACOAD178.9°180.0°
CAUCAZCAOH211.9°0.1°
CAZCAUOADH22178.9°180.0°
CAUCAZCARH232.5°0.0°
OACCAUOADH220.0°0.0°
H1CAMCAJH20.3°0.0°
H2CAJCAIH31.3°0.0°
H3CAICAKH41.0°0.0°
H4CAKCANH50.8°0.1°
H7CAHCATH827.5°95.5°
H7CAHCATH991.2°23.8°
H10CAAH11H12120.0°120.0°
H13CABH14H15119.9°120.1°
H16CAQCALH173.7°0.1°
H18CAFCAGH19173.0°180.0°
H20CAPCAOH211.6°0.0°

222415

PDB entries from 2024-07-10

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