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JY9

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OBCCBKsing1.43Å1.48Å
NAVCAUsing1.47Å1.42Å
CALCAMdoub1.39Å1.43ÅAromatic
CALCAKsing1.37Å1.38ÅAromatic
CAMNANsing1.31Å1.41ÅAromatic
CBJCBKsing1.53Å1.54Å
CBJCBFsing1.53Å1.48Å
CAKCAJdoub1.41Å1.39ÅAromatic
NANCAIdoub1.33Å1.33ÅAromatic
CAUCAQsing1.51Å1.40Å
CAJCAIsing1.42Å1.44ÅAromatic
CAJCAEsing1.40Å1.43ÅAromatic
CAICADsing1.41Å1.41ÅAromatic
CBFCAEsing1.51Å1.41Å
CAECAFdoub1.36Å1.40ÅAromatic
CARCAQdoub1.36Å1.40ÅAromatic
CARCASsing1.39Å1.40ÅAromatic
CAQCAXsing1.41Å1.43ÅAromatic
CADNAHsing1.40Å1.32Å
CADCAGdoub1.38Å1.39ÅAromatic
NAHCAOsing1.35Å1.32Å
NAYCAXdoub1.33Å1.33ÅAromatic
NAYCAZsing1.32Å1.33ÅAromatic
CAFCAGsing1.39Å1.41ÅAromatic
CAXCAWsing1.42Å1.39ÅAromatic
CASCATdoub1.36Å1.40ÅAromatic
CAOCAZsing1.48Å1.42Å
CAOOAPdoub1.21Å1.25Å
CAZCBAdoub1.40Å1.41ÅAromatic
OABPAAsing1.61Å1.53Å
CAWCATsing1.40Å1.42ÅAromatic
CAWCBBdoub1.41Å1.37ÅAromatic
PAAOBEsing1.61Å1.64Å
PAAOACsing1.61Å1.48Å
CBACBBsing1.37Å1.41ÅAromatic
CBBCBIsing1.51Å1.44Å
OBECBDsing1.43Å1.42Å
CBHCBIsing1.53Å1.56Å
CBHCBGsing1.53Å1.57Å
CBDCBGsing1.53Å1.57Å
OABH1sing0.97Å0.95Å
OACH2sing0.97Å0.95Å
CBDH3sing1.09Å1.10Å
CBDH4sing1.09Å1.10Å
CBGH5sing1.09Å1.10Å
CBGH6sing1.09Å1.10Å
CBHH7sing1.09Å1.10Å
CBHH8sing1.09Å1.10Å
CBIH9sing1.09Å1.10Å
CBIH10sing1.09Å1.10Å
CBAH11sing1.08Å1.08Å
CATH12sing1.08Å1.08Å
CASH13sing1.08Å1.08Å
CARH14sing1.08Å1.08Å
CAUH15sing1.09Å1.10Å
CAUH16sing1.09Å1.10Å
NAVH17sing1.01Å1.00Å
NAVH18sing1.01Å1.00Å
NAHH20sing0.97Å1.00Å
CAGH21sing1.08Å1.08Å
CAFH22sing1.08Å1.08Å
CAMH23sing1.08Å1.08Å
CALH24sing1.08Å1.08Å
CAKH25sing1.08Å1.08Å
CBFH26sing1.09Å1.10Å
CBFH27sing1.09Å1.10Å
CBJH28sing1.09Å1.10Å
CBJH29sing1.09Å1.10Å
CBKH30sing1.09Å1.10Å
CBKH31sing1.09Å1.10Å
OBCH32sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OBCCBKCBJ108.9°109.5°
OBCCBKH30109.6°109.4°
OBCCBKH31109.6°109.5°
CBKOBCH32109.5°114.0°
NAVCAUCAQ110.5°109.5°
NAVCAUH15109.2°109.5°
NAVCAUH16109.2°109.5°
CAUNAVH17109.5°111.0°
CAUNAVH18109.5°111.0°
CAMCALCAK121.6°119.9°
CALCAMNAN118.6°121.7°
CALCAMH23120.7°119.2°
CAMCALH24119.2°120.0°
CALCAKCAJ117.9°118.1°
CAKCALH24119.2°120.1°
CALCAKH25121.1°120.9°
CAMNANCAI119.8°121.4°
NANCAMH23120.7°119.1°
CBKCBJCBF108.2°109.5°
CBKCBJH28109.8°109.5°
CBKCBJH29109.8°109.5°
CBJCBKH30109.6°109.5°
CBJCBKH31109.6°109.5°
CBJCBFCAE115.4°109.5°
CBJCBFH26108.0°109.5°
CBJCBFH27108.0°109.5°
CBFCBJH28109.8°109.5°
CBFCBJH29109.8°109.4°
CAKCAJCAI120.3°119.0°
CAKCAJCAE120.3°121.3°
CAJCAKH25121.0°121.0°
NANCAICAJ121.6°119.9°
NANCAICAD117.6°121.1°
CAUCAQCAR119.0°120.1°
CAUCAQCAX120.4°120.1°
CAQCAUH15109.2°109.5°
CAQCAUH16109.2°109.5°
CAICAJCAE119.3°119.8°
CAJCAICAD120.8°119.0°
CAJCAECBF125.5°120.1°
CAJCAECAF118.1°119.9°
CAICADNAH115.4°120.2°
CAICADCAG118.9°119.5°
CBFCAECAF116.2°120.0°
CAECBFH26108.0°109.5°
CAECBFH27108.0°109.4°
CAECAFCAG122.1°120.9°
CAECAFH22119.0°119.5°
CAQCARCAS118.7°121.1°
CARCAQCAX120.5°119.7°
CAQCARH14120.7°119.5°
CARCASCAT121.3°120.9°
CARCASH13119.4°119.5°
CASCARH14120.6°119.4°
CAQCAXNAY119.8°121.0°
CAQCAXCAW120.1°119.0°
NAHCADCAG125.5°120.3°
CADNAHCAO125.8°120.0°
CADNAHH20117.1°120.0°
CADCAGCAF120.6°120.9°
CADCAGH21119.7°119.6°
NAHCAOCAZ114.7°120.0°
NAHCAOOAP124.0°120.0°
CAONAHH20117.1°120.0°
CAXNAYCAZ123.4°121.3°
NAYCAXCAW120.0°120.0°
NAYCAZCAO118.5°119.2°
NAYCAZCBA118.1°121.5°
CAFCAGH21119.7°119.5°
CAGCAFH22118.9°119.5°
CAXCAWCAT118.9°119.6°
CAXCAWCBB120.4°119.2°
CASCATCAW120.3°119.6°
CASCATH12119.8°120.1°
CATCASH13119.3°119.5°
CAZCAOOAP121.3°120.0°
CAOCAZCBA123.4°119.2°
CAZCBACBB120.7°119.8°
CAZCBAH11119.6°120.1°
OABPAAOBE107.3°102.0°
OABPAAOAC123.5°102.0°
PAAOABH1109.5°114.0°
CATCAWCBB120.6°121.3°
CAWCATH12119.8°120.2°
CAWCBBCBA117.3°118.2°
CAWCBBCBI119.0°120.9°
OBEPAAOAC106.0°102.0°
PAAOBECBD123.0°123.0°
PAAOACH2109.5°114.0°
CBACBBCBI123.7°120.8°
CBBCBAH11119.6°120.1°
CBBCBICBH111.1°109.5°
CBBCBIH9109.0°109.4°
CBBCBIH10109.1°109.5°
OBECBDCBG105.5°109.5°
OBECBDH3110.5°109.5°
OBECBDH4110.5°109.5°
CBICBHCBG113.2°109.5°
CBICBHH7108.5°109.4°
CBICBHH8108.5°109.5°
CBHCBIH9109.1°109.5°
CBHCBIH10109.0°109.5°
CBHCBGCBD112.7°109.5°
CBHCBGH5108.7°109.4°
CBHCBGH6108.7°109.5°
CBGCBHH7108.5°109.4°
CBGCBHH8108.5°109.5°
CBGCBDH3110.4°109.5°
CBGCBDH4110.5°109.5°
CBDCBGH5108.6°109.5°
CBDCBGH6108.7°109.5°
H3CBDH4109.5°109.5°
H5CBGH6109.4°109.4°
H7CBHH8109.4°109.5°
H9CBIH10109.5°109.5°
H15CAUH16109.5°109.4°
H17NAVH18109.5°111.1°
H26CBFH27109.5°109.5°
H28CBJH29109.5°109.5°
H30CBKH31109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OBCCBKCBJH30119.9°120.0°
OBCCBKCBJH31119.9°120.0°
OBCCBKCBJCBF178.5°180.0°
OBCCBKCBJH2858.7°60.0°
OBCCBKCBJH2961.6°60.0°
OBCCBKH30H31120.2°119.9°
NAVCAUCAQH15120.2°120.0°
NAVCAUCAQH16120.1°120.1°
NAVCAUCAQCAR88.0°100.0°
NAVCAUCAQCAX90.0°80.0°
NAVCAUH15H16119.5°120.0°
CAUNAVH17H18120.0°124.0°
CAMCALCAKH24180.0°180.0°
CALCAMNANH23180.0°180.0°
CAMCALCAKCAJ0.1°0.0°
CALCAMNANCAI2.8°0.0°
CAMCALCAKH25179.9°180.0°
CAKCALCAMNAN0.6°0.0°
CALCAKCAJH25180.0°180.0°
CALCAKCAJCAI1.7°0.0°
CALCAKCAJCAE179.1°180.0°
CAKCALCAMH23179.4°180.0°
CAMNANCAICAJ4.5°0.0°
CAMNANCAICAD177.0°180.0°
NANCAMCALH24179.4°179.9°
CBKCBJCBFH28119.8°120.0°
CBKCBJCBFH29119.8°120.0°
CBKCBJCBFCAE163.8°180.0°
CBKCBJCBFH2642.9°60.0°
CBKCBJCBFH2775.3°60.1°
CBKCBJH28H29120.5°120.0°
CBJCBKH30H31120.3°120.0°
CBJCBKOBCH32180.0°180.0°
CBJCBFCAECAJ86.0°84.9°
CBJCBFCAEH26120.9°120.1°
CBJCBFCAEH27120.9°120.0°
CBJCBFCAECAF97.7°95.2°
CBJCBFH26H27117.3°120.1°
CBFCBJH28H29120.6°119.9°
CBFCBJCBKH3061.5°60.0°
CBFCBJCBKH3158.6°60.0°
CAKCAJCAINAN4.0°0.0°
CAKCAJCAICAE177.5°180.0°
CAKCAJCAICAD177.6°180.0°
CAKCAJCAECBF5.8°0.1°
CAKCAJCAECAF177.9°179.8°
CAJCAKCALH24179.9°180.0°
NANCAICAJCAD178.4°180.0°
NANCAICAJCAE178.5°180.0°
NANCAICADNAH0.1°0.0°
NANCAICADCAG176.4°179.8°
CAINANCAMH23177.2°180.0°
CAUCAQCARCAX178.0°180.0°
CAUCAQCARCAS178.7°180.0°
CAUCAQCAXNAY1.4°0.1°
CAUCAQCAXCAW179.7°180.0°
CAUCAQCARH141.4°0.0°
CAQCAUH15H16119.5°120.0°
CAQCAUNAVH17180.0°179.9°
CAQCAUNAVH1860.0°56.0°
CAICAJCAECBF176.7°180.0°
CAICAJCAECAF0.4°0.2°
CAJCAICADNAH178.5°180.0°
CAJCAICADCAG2.1°0.2°
CAICAJCAKH25178.3°180.0°
CAECAJCAICAD0.1°0.0°
CAJCAECBFCAF176.4°179.8°
CAJCAECAFCAG1.4°0.2°
CAJCAECAFH22178.6°179.8°
CAECAJCAKH250.9°0.0°
CAJCAECBFH26153.1°155.0°
CAJCAECBFH2734.9°35.0°
CAICADNAHCAG176.2°179.8°
CAICADNAHCAO165.9°154.8°
CAICADCAGCAF3.9°0.2°
CAICADNAHH2014.1°25.2°
CAICADCAGH21176.1°179.7°
CBFCAECAFCAG175.2°180.0°
CBFCAECAFH224.8°0.1°
CAECBFH26H27117.3°119.9°
CAECBFCBJH2876.4°59.9°
CAECBFCBJH2944.0°60.0°
CAECAFCAGCAD3.7°0.0°
CAECAFCAGH22180.0°180.0°
CAECAFCAGH21176.3°179.9°
CAFCAECBFH2623.2°24.8°
CAFCAECBFH27141.5°144.8°
CAQCARCASH14180.0°179.9°
CARCAQCAXNAY176.5°180.0°
CARCAQCAXCAW2.4°0.0°
CAQCARCASCAT1.9°0.0°
CAQCARCASH13178.1°179.9°
CARCAQCAUH15151.9°20.0°
CARCAQCAUH1632.2°140.0°
CASCARCAQCAX3.4°0.0°
CARCASCATH13180.0°179.9°
CARCASCATCAW0.7°0.0°
CARCASCATH12179.3°180.0°
CAQCAXNAYCAW178.9°180.0°
CAQCAXNAYCAZ177.6°179.7°
CAQCAXCAWCAT0.2°0.0°
CAQCAXCAWCBB178.9°180.0°
CAXCAQCARH14176.6°179.9°
CAXCAQCAUH1530.2°160.0°
CAXCAQCAUH16149.9°40.1°
CADNAHCAOH20180.0°180.0°
NAHCADCAGCAF180.0°180.0°
CADNAHCAOCAZ172.4°174.5°
CADNAHCAOOAP10.7°5.5°
NAHCADCAGH210.0°0.1°
CAGCADNAHCAO10.3°24.9°
CADCAGCAFH21180.0°179.9°
CAGCADNAHH20169.7°155.1°
CADCAGCAFH22176.3°180.0°
NAHCAOCAZNAY8.2°0.0°
NAHCAOCAZOAP177.0°180.0°
NAHCAOCAZCBA173.3°179.6°
CAXNAYCAZCAO176.9°180.0°
CAXNAYCAZCBA1.7°0.4°
NAYCAXCAWCAT179.1°180.0°
NAYCAXCAWCBB2.3°0.1°
CAZNAYCAXCAW3.5°0.3°
NAYCAZCAOCBA178.5°179.6°
NAYCAZCAOOAP174.8°180.0°
NAYCAZCBACBB1.3°0.1°
NAYCAZCBAH11178.7°180.0°
CAXCAWCATCAS1.8°0.0°
CAXCAWCATCBB178.6°180.0°
CAXCAWCBBCBA0.6°0.2°
CAXCAWCBBCBI179.5°180.0°
CAXCAWCATH12178.3°180.0°
CASCATCAWH12180.0°180.0°
CASCATCAWCBB179.6°180.0°
CATCASCARH14178.1°179.9°
CAOCAZCBACBB179.8°179.7°
CAOCAZCBAH110.2°0.3°
CAZCAONAHH207.6°5.5°
OAPCAOCAZCBA3.7°0.3°
OAPCAONAHH20169.3°174.5°
CAZCBACBBCAW2.3°0.2°
CAZCBACBBH11180.0°179.9°
CAZCBACBBCBI178.8°179.9°
OABPAAOBEOAC133.7°105.2°
OABPAAOBECBD129.9°89.8°
OABPAAOACH2180.0°74.8°
CATCAWCBBCBA178.0°179.8°
CATCAWCBBCBI0.9°0.0°
CAWCATCASH13179.3°179.9°
CAWCBBCBACBI178.9°179.7°
CAWCBBCBICBH145.0°84.7°
CAWCBBCBIH994.8°35.3°
CAWCBBCBIH1024.8°155.3°
CAWCBBCBAH11177.6°179.8°
CBBCAWCATH120.4°0.0°
PAAOBECBDCBG171.7°180.0°
OBEPAAOABH1180.0°180.0°
OBEPAAOACH255.9°180.0°
PAAOBECBDH352.4°60.0°
PAAOBECBDH468.9°60.0°
OACPAAOBECBD3.8°165.0°
OACPAAOABH156.5°74.8°
CBACBBCBICBH36.2°95.1°
CBACBBCBIH984.1°145.0°
CBACBBCBIH10156.4°25.0°
CBBCBICBHH9120.2°119.9°
CBBCBICBHH10120.2°120.0°
CBBCBICBHCBG164.1°180.0°
CBBCBICBHH775.4°60.0°
CBBCBICBHH843.5°59.9°
CBBCBIH9H10119.3°120.0°
CBICBBCBAH111.2°0.0°
OBECBDCBGCBH82.5°180.0°
OBECBDCBGH3119.4°120.0°
OBECBDCBGH4119.4°120.0°
OBECBDH3H4121.9°120.0°
OBECBDCBGH538.0°60.0°
OBECBDCBGH6157.0°59.9°
CBICBHCBGH7120.6°119.9°
CBICBHCBGH8120.6°120.0°
CBICBHCBGCBD53.6°180.0°
CBICBHCBGH5174.1°60.0°
CBICBHCBGH666.9°59.9°
CBICBHH7H8118.3°120.0°
CBHCBIH9H10119.2°120.0°
CBHCBGCBDH5120.5°120.0°
CBHCBGCBDH6120.5°120.1°
CBHCBGCBDH336.8°60.0°
CBHCBGCBDH4158.1°60.0°
CBHCBGH5H6118.5°120.0°
CBGCBHH7H8118.3°120.1°
CBGCBHCBIH943.8°60.1°
CBGCBHCBIH1075.7°60.0°
CBGCBDH3H4121.8°120.0°
CBDCBGH5H6118.5°120.0°
CBDCBGCBHH766.9°60.1°
CBDCBGCBHH8174.2°60.0°
H3CBDCBGH5157.3°180.0°
H3CBDCBGH683.7°60.1°
H4CBDCBGH581.4°60.0°
H4CBDCBGH637.6°179.9°
H5CBGCBHH753.5°180.0°
H5CBGCBHH865.3°60.0°
H6CBGCBHH7172.5°60.1°
H6CBGCBHH853.7°179.9°
H7CBHCBIH9164.4°180.0°
H7CBHCBIH1044.9°60.0°
H8CBHCBIH976.8°60.0°
H8CBHCBIH10163.7°180.0°
H12CATCASH130.7°0.0°
H13CASCARH141.9°0.0°
H15CAUNAVH1759.8°59.9°
H15CAUNAVH1860.1°176.0°
H16CAUNAVH1759.9°60.0°
H16CAUNAVH18179.9°64.1°
H21CAGCAFH223.7°0.0°
H23CAMCALH240.6°0.0°
H24CALCAKH250.1°0.1°
H26CBFCBJH28162.7°180.0°
H26CBFCBJH2976.9°60.0°
H27CBFCBJH2844.5°60.0°
H27CBFCBJH29164.8°179.9°
H28CBJCBKH30178.6°180.0°
H28CBJCBKH3161.2°60.0°
H29CBJCBKH3058.3°60.0°
H29CBJCBKH31178.4°180.0°
H30CBKOBCH3260.1°60.0°
H31CBKOBCH3260.1°59.9°

251174

PDB entries from 2026-03-25

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