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SummaryGeometryRelated PDB entries

JVJ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N16C15sing1.47Å1.51Å
N16C17sing1.47Å1.55Å
C15C14sing1.53Å1.57Å
C17C18sing1.53Å1.57Å
C14C13sing1.53Å1.54Å
C18C13sing1.53Å1.55Å
C13C12sing1.53Å1.54Å
C12O11sing1.43Å1.48Å
O11C10sing1.36Å1.39Å
C10N19doub1.32Å1.37ÅAromatic
C10C9sing1.39Å1.37ÅAromatic
N19C20sing1.33Å1.44ÅAromatic
C9N8doub1.32Å1.35ÅAromatic
C22C23doub1.38Å1.42ÅAromatic
C22C21sing1.40Å1.46ÅAromatic
C23C24sing1.39Å1.43ÅAromatic
C20C21sing1.48Å1.52Å
C20C7doub1.40Å1.39ÅAromatic
C29O28sing1.34Å1.43ÅAromatic
C29C25doub1.36Å1.44ÅAromatic
C21C31doub1.40Å1.45ÅAromatic
N8C7sing1.33Å1.34ÅAromatic
C7C6sing1.48Å1.44Å
C24C25sing1.48Å1.49Å
C24C30doub1.39Å1.48ÅAromatic
O28C27sing1.34Å1.45ÅAromatic
C25C26sing1.47Å1.42ÅAromatic
C31C30sing1.38Å1.44ÅAromatic
C6C32doub1.40Å1.44ÅAromatic
C6C5sing1.39Å1.38ÅAromatic
C27C26doub1.34Å1.41ÅAromatic
C32C33sing1.38Å1.43ÅAromatic
C5C4doub1.38Å1.45ÅAromatic
C33C3doub1.38Å1.40ÅAromatic
C4C3sing1.38Å1.43ÅAromatic
C3C2sing1.51Å1.50Å
C2N1sing1.47Å1.50Å
N1H1sing1.01Å1.00Å
N1H2sing1.01Å1.00Å
C2H4sing1.09Å1.10Å
C2H5sing1.09Å1.10Å
C33H6sing1.08Å1.08Å
C32H7sing1.08Å1.08Å
C5H8sing1.08Å1.08Å
C4H9sing1.08Å1.08Å
C31H10sing1.08Å1.08Å
C30H11sing1.08Å1.08Å
C29H12sing1.08Å1.08Å
C27H13sing1.08Å1.08Å
C26H14sing1.08Å1.08Å
C23H15sing1.08Å1.08Å
C22H16sing1.08Å1.08Å
C9H17sing1.08Å1.08Å
C12H18sing1.09Å1.10Å
C12H19sing1.09Å1.10Å
C13H20sing1.09Å1.10Å
C18H21sing1.09Å1.10Å
C18H22sing1.09Å1.10Å
C17H23sing1.09Å1.10Å
C17H24sing1.09Å1.10Å
N16H25sing1.01Å1.00Å
C15H27sing1.09Å1.10Å
C15H28sing1.09Å1.10Å
C14H29sing1.09Å1.10Å
C14H30sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C15N16C17115.3°111.2°
N16C15C14113.3°109.6°
C15N16H25108.0°111.0°
N16C15H27108.5°109.5°
N16C15H28108.5°109.5°
N16C17C18111.5°109.5°
N16C17H23109.0°109.5°
N16C17H24109.0°109.5°
C17N16H25108.0°111.0°
C15C14C13110.2°109.2°
C14C15H27108.5°109.4°
C14C15H28108.5°109.4°
C15C14H29109.3°109.4°
C15C14H30109.3°109.5°
C17C18C13110.0°109.3°
C17C18H21109.3°109.5°
C17C18H22109.3°109.6°
C18C17H23108.9°109.5°
C18C17H24108.9°109.5°
C14C13C18112.4°109.2°
C14C13C12108.3°109.5°
C14C13H20108.0°109.5°
C13C14H29109.3°109.4°
C13C14H30109.3°109.6°
C18C13C12111.9°109.6°
C18C13H20107.9°109.6°
C13C18H21109.3°109.5°
C13C18H22109.4°109.5°
C13C12O11108.3°109.5°
C13C12H18109.8°109.5°
C13C12H19109.8°109.4°
C12C13H20108.1°109.5°
C12O11C10120.6°117.0°
O11C12H18109.8°109.5°
O11C12H19109.8°109.5°
O11C10N19120.5°119.9°
O11C10C9120.5°119.9°
N19C10C9119.0°120.2°
C10N19C20120.9°120.0°
C10C9N8118.9°120.3°
C10C9H17120.5°119.9°
N19C20C21119.8°120.2°
N19C20C7117.3°119.7°
C9N8C7125.2°120.1°
N8C9H17120.5°119.9°
C23C22C21121.0°120.0°
C22C23C24117.6°120.0°
C22C23H15121.2°120.0°
C23C22H16119.5°120.0°
C22C21C20117.8°120.0°
C22C21C31121.5°120.0°
C21C22H16119.5°120.0°
C23C24C25119.6°120.0°
C23C24C30122.9°120.0°
C24C23H15121.2°120.0°
C21C20C7122.6°120.1°
C20C21C31120.6°120.0°
C20C7N8118.3°119.8°
C20C7C6124.5°120.1°
O28C29C25106.2°108.4°
C29O28C27106.0°110.8°
O28C29H12126.9°125.8°
C29C25C24123.0°127.1°
C29C25C26111.8°105.8°
C25C29H12126.9°125.8°
C21C31C30117.9°120.0°
C21C31H10121.1°120.0°
N8C7C6117.0°120.1°
C7C6C32117.1°120.1°
C7C6C5119.1°120.2°
C25C24C30117.4°120.0°
C24C25C26125.1°127.1°
C24C30C31119.1°120.0°
C24C30H11120.5°120.0°
O28C27C26111.7°108.9°
O28C27H13124.1°125.5°
C25C26C27104.4°106.1°
C25C26H14127.8°127.0°
C30C31H10121.0°120.0°
C31C30H11120.5°120.0°
C32C6C5123.7°119.7°
C6C32C33119.1°119.9°
C6C32H7120.5°120.0°
C6C5C4116.8°119.9°
C6C5H8121.6°120.0°
C26C27H13124.2°125.5°
C27C26H14127.8°127.0°
C32C33C3118.3°120.1°
C32C33H6120.8°120.0°
C33C32H7120.4°120.1°
C5C4C3120.2°120.1°
C4C5H8121.6°120.1°
C5C4H9119.9°119.9°
C33C3C4121.8°120.2°
C33C3C2117.6°119.9°
C3C33H6120.9°119.9°
C4C3C2120.5°119.9°
C3C4H9119.9°119.9°
C3C2N1110.9°109.4°
C3C2H4109.1°109.5°
C3C2H5109.1°109.4°
C2N1H1109.5°111.0°
C2N1H2109.5°110.9°
N1C2H4109.1°109.5°
N1C2H5109.1°109.5°
H1N1H2109.5°111.1°
H4C2H5109.5°109.5°
H18C12H19109.4°109.5°
H21C18H22109.5°109.5°
H23C17H24109.5°109.5°
H27C15H28109.4°109.4°
H29C14H30109.4°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C15N16C17H25120.9°124.1°
N16C15C14H27120.6°120.1°
N16C15C14H28120.6°120.1°
C15N16C17C1849.2°61.8°
N16C15C14C1350.3°59.1°
C15N16C17H23169.5°58.2°
C15N16C17H2471.0°178.2°
N16C15H27H28118.2°120.0°
N16C15C14H29170.4°60.8°
N16C15C14H3069.9°179.1°
C17N16C15C1447.9°61.7°
N16C17C18H23120.3°120.0°
N16C17C18H24120.3°120.0°
N16C17C18C1352.9°59.2°
N16C17C18H2167.1°179.1°
N16C17C18H22173.0°60.8°
N16C17H23H24119.1°120.0°
C17N16C15H2772.7°58.3°
C17N16C15H28168.5°178.2°
C15C14C13H29120.1°119.8°
C15C14C13H30120.1°120.0°
C15C14C13C1856.4°57.5°
C15C14C13C12179.4°177.5°
C15C14C13H2062.6°62.4°
C14C15N16H2572.9°62.4°
C14C15H27H28118.3°119.9°
C15C14H29H30119.6°120.1°
C17C18C13C1458.5°57.7°
C17C18C13H21120.0°119.9°
C17C18C13H22120.1°120.0°
C17C18C13C12179.4°177.6°
C17C18C13H2060.5°62.2°
C17C18H21H22119.7°120.1°
C18C17H23H24119.0°120.0°
C18C17N16H2571.6°62.4°
C14C13C18C12122.1°119.9°
C14C13C18H20119.1°119.9°
C14C13C12H20116.8°120.0°
C14C13C12O1179.9°65.1°
C14C13C12H1839.9°174.9°
C14C13C12H19160.3°54.9°
C14C13C18H2161.5°177.6°
C14C13C18H22178.6°62.4°
C13C14C15H2770.3°61.0°
C13C14C15H28170.9°179.1°
C13C14H29H30119.7°120.2°
C18C13C12H20118.7°120.2°
C18C13C12O11155.6°175.2°
C18C13C12H1884.5°55.1°
C18C13C12H1935.8°64.9°
C13C18H21H22119.8°120.1°
C13C18C17H23173.3°60.8°
C13C18C17H2467.4°179.2°
C18C13C14H29176.5°62.3°
C18C13C14H3063.7°177.5°
C13C12O11H18119.8°120.0°
C13C12O11H19119.8°119.9°
C13C12O11C10117.4°180.0°
C13C12H18H19120.5°120.0°
C12C13C18H2160.6°62.5°
C12C13C18H2259.3°57.5°
C12C13C14H2959.3°57.7°
C12C13C14H3060.4°62.5°
C12O11C10N1911.7°0.0°
C12O11C10C9167.1°180.0°
O11C12H18H19120.6°120.0°
O11C12C13H2036.9°55.0°
O11C10N19C9178.8°180.0°
O11C10N19C20179.7°180.0°
O11C10C9N8176.6°179.7°
O11C10C9H173.4°0.0°
C10O11C12H18122.7°60.0°
C10O11C12H192.4°60.1°
N19C10C9N84.6°0.2°
C10N19C20C21177.4°180.0°
C10N19C20C73.1°0.1°
N19C10C9H17175.3°180.0°
C9C10N19C200.9°0.0°
C10C9N8H17180.0°179.8°
C10C9N8C74.5°0.5°
N19C20C21C2221.6°134.6°
N19C20C21C7174.0°180.0°
N19C20C21C31153.7°45.2°
N19C20C7N83.4°0.2°
N19C20C7C6178.5°180.0°
C9N8C7C200.3°0.5°
C9N8C7C6175.2°179.7°
C23C22C21H16180.0°179.5°
C22C23C24H15180.0°179.8°
C23C22C21C20178.3°179.7°
C23C22C21C313.1°0.5°
C22C23C24C25177.6°179.7°
C22C23C24C301.0°0.2°
C21C22C23C241.7°0.5°
C22C21C20C31175.2°179.7°
C22C21C20C7164.5°45.5°
C22C21C31C301.6°0.2°
C22C21C31H10178.4°179.8°
C21C22C23H15178.3°179.7°
C23C24C25C2935.4°179.6°
C23C24C25C30176.8°179.9°
C23C24C25C26147.9°0.1°
C23C24C30C312.5°0.1°
C23C24C30H11177.5°180.0°
C24C23C22H16178.3°180.0°
C21C20C7N8177.5°179.8°
C21C20C7C67.4°0.0°
C20C21C31C30176.7°180.0°
C20C21C31H103.4°0.1°
C20C21C22H161.7°0.2°
C7C20C21C3120.3°134.8°
C20C7N8C6175.5°179.8°
C20C7C6C3259.4°45.1°
C20C7C6C5121.3°134.9°
O28C29C25H12180.0°179.9°
O28C29C25C24178.2°180.0°
O28C29C25C261.1°0.3°
C29O28C27C261.3°0.2°
C29O28C27H13178.7°180.0°
C29C25C24C26176.7°179.7°
C29C25C24C30141.3°0.3°
C25C29O28C271.4°0.1°
C29C25C26C270.3°0.5°
C29C25C26H14179.7°179.8°
C21C31C30C241.1°0.0°
C21C31C30H10180.0°180.0°
C21C31C30H11178.9°180.0°
C31C21C22H16176.9°180.0°
N8C7C6C32115.8°134.7°
N8C7C6C563.5°45.3°
C7N8C9H17175.5°179.7°
C7C6C32C5179.3°180.0°
C7C6C32C33179.2°180.0°
C7C6C5C4178.5°179.8°
C7C6C32H70.9°0.1°
C7C6C5H81.5°0.0°
C25C24C30C31179.1°180.0°
C24C25C26C27177.3°179.8°
C25C24C30H110.9°0.1°
C24C25C29H121.8°0.1°
C24C25C26H142.7°0.0°
C25C24C23H152.4°0.1°
C30C24C25C2635.4°180.0°
C24C30C31H11180.0°180.0°
C24C30C31H10178.9°179.9°
C30C24C23H15178.9°180.0°
O28C27C26C250.6°0.4°
O28C27C26H13180.0°179.8°
C27O28C29H12178.6°180.0°
O28C27C26H14179.4°179.8°
C25C26C27H14180.0°179.8°
C26C25C29H12178.9°179.8°
C25C26C27H13179.4°179.8°
C6C32C33H7180.0°179.9°
C32C6C5C42.3°0.2°
C6C32C33C30.4°0.0°
C6C32C33H6179.5°180.0°
C32C6C5H8177.7°180.0°
C5C6C32C331.6°0.1°
C6C5C4H8180.0°179.8°
C6C5C4C31.0°0.4°
C5C6C32H7178.4°179.9°
C6C5C4H9179.0°179.9°
C32C33C3H6180.0°180.0°
C32C33C3C41.6°0.2°
C32C33C3C2176.7°180.0°
C5C4C3C330.9°0.4°
C5C4C3H9180.0°179.7°
C5C4C3C2177.4°179.8°
C33C3C4C2178.3°179.8°
C33C3C2N1170.3°90.0°
C33C3C2H469.5°30.0°
C33C3C2H550.1°150.0°
C3C33C32H7179.6°179.9°
C33C3C4H9179.1°179.9°
C4C3C2N18.0°90.2°
C4C3C2H4112.2°149.8°
C4C3C2H5128.2°29.8°
C4C3C33H6178.4°179.8°
C3C4C5H8178.9°179.8°
C3C2N1H4120.2°120.0°
C3C2N1H5120.2°120.0°
C3C2N1H1180.0°56.0°
C3C2N1H260.0°180.0°
C3C2H4H5119.4°120.0°
C2C3C33H63.3°0.0°
C2C3C4H92.7°0.1°
C2N1H1H2120.0°123.9°
N1C2H4H5119.4°120.1°
H1N1C2H459.8°176.0°
H1N1C2H559.8°63.9°
H2N1C2H4179.8°60.0°
H2N1C2H560.2°60.0°
H6C33C32H70.4°0.1°
H8C5C4H91.0°0.1°
H10C31C30H111.1°0.0°
H13C27C26H140.6°0.0°
H15C23C22H161.7°0.2°
H18C12C13H20156.7°65.1°
H19C12C13H2082.9°174.9°
H20C13C18H21179.4°57.7°
H20C13C18H2259.5°177.7°
H20C13C14H2957.5°177.8°
H20C13C14H30177.3°57.6°
H21C18C17H2353.2°59.1°
H21C18C17H24172.6°60.9°
H22C18C17H2366.7°179.2°
H22C18C17H2452.7°59.2°
H23C17N16H2548.7°177.6°
H24C17N16H25168.1°57.7°
H25N16C15H27166.5°177.6°
H25N16C15H2847.7°57.7°
H27C15C14H2949.8°179.2°
H27C15C14H30169.6°59.0°
H28C15C14H2969.0°59.3°
H28C15C14H3050.7°60.8°

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PDB entries from 2024-07-17

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