JSQ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1G	PG	doub	1.48Å	1.51Å
PG	O3G	sing	1.61Å	1.51Å
PG	O3B	sing	1.61Å	1.61Å
PG	O2G	sing	1.61Å	1.51Å
O1B	PB	doub	1.48Å	1.51Å
O3B	PB	sing	1.61Å	1.61Å
O2B	PB	sing	1.61Å	1.50Å
PB	O3A	sing	1.61Å	1.61Å
O2A	PA	doub	1.48Å	1.52Å
O3A	PA	sing	1.61Å	1.61Å
O3'	C3'	sing	1.43Å	1.42Å
C5'	C4'	sing	1.53Å	1.53Å
C5'	O5'	sing	1.43Å	1.43Å
PA	O5'	sing	1.61Å	1.62Å
PA	O1A	sing	1.61Å	1.50Å
C4'	C3'	sing	1.54Å	1.54Å
C4'	O4'	sing	1.44Å	1.44Å
C3'	C2'	sing	1.55Å	1.54Å
O2'	C2'	sing	1.43Å	1.43Å
O4'	C1'	sing	1.44Å	1.44Å
C2'	C1'	sing	1.55Å	1.54Å
C1'	N9	sing	1.46Å	1.46Å
N9	C8	sing	1.36Å	1.36Å	Aromatic
N9	C4	sing	1.37Å	1.36Å	Aromatic
C8	N7	doub	1.30Å	1.30Å	Aromatic
N7	C5	sing	1.36Å	1.35Å	Aromatic
C4	N3	doub	1.33Å	1.32Å	Aromatic
C4	C5	sing	1.40Å	1.40Å	Aromatic
N3	C2	sing	1.32Å	1.31Å	Aromatic
C5	C6	doub	1.40Å	1.40Å	Aromatic
C2	F2	sing	1.35Å	1.36Å
C2	N1	doub	1.32Å	1.32Å	Aromatic
C6	N1	sing	1.33Å	1.32Å	Aromatic
C6	N6	sing	1.38Å	1.38Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	H2'	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C5'	H5'1	sing	1.09Å	1.10Å
C8	H8	sing	1.08Å	1.08Å
N6	HN62	sing	0.97Å	1.00Å
N6	HN61	sing	0.97Å	1.00Å
O1A	H1	sing	0.97Å	0.95Å
O2'	HO2'	sing	0.97Å	0.95Å
O2B	H2	sing	0.97Å	0.95Å
O2G	H3	sing	0.97Å	0.95Å
O3'	HO3'	sing	0.97Å	0.95Å
O3G	H4	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1G	PG	O3G	110.6°	109.5°
O1G	PG	O3B	107.8°	109.5°
O1G	PG	O2G	110.1°	109.5°
O3G	PG	O3B	111.9°	109.5°
O3G	PG	O2G	109.1°	109.4°
PG	O3G	H4	109.5°	114.0°
O3B	PG	O2G	107.2°	109.5°
PG	O3B	PB	115.3°	134.0°
PG	O2G	H3	109.5°	114.0°
O1B	PB	O3B	112.1°	109.4°
O1B	PB	O2B	110.2°	109.5°
O1B	PB	O3A	113.8°	109.5°
O3B	PB	O2B	103.4°	109.5°
O3B	PB	O3A	110.8°	109.5°
O2B	PB	O3A	105.9°	109.5°
PB	O2B	H2	109.5°	114.0°
PB	O3A	PA	117.2°	134.0°
O2A	PA	O3A	112.6°	109.4°
O2A	PA	O5'	111.3°	109.4°
O2A	PA	O1A	110.9°	109.4°
O3A	PA	O5'	108.9°	109.5°
O3A	PA	O1A	106.1°	109.5°
O3'	C3'	C4'	111.1°	110.6°
O3'	C3'	C2'	110.3°	110.5°
O3'	C3'	H3'	111.9°	110.4°
C3'	O3'	HO3'	109.5°	113.9°
C4'	C5'	O5'	109.1°	109.5°
C5'	C4'	C3'	109.4°	109.9°
C5'	C4'	O4'	110.6°	110.0°
C5'	C4'	H4'	110.1°	110.0°
C4'	C5'	H5'2	109.6°	109.5°
C4'	C5'	H5'1	109.6°	109.5°
C5'	O5'	PA	109.3°	123.0°
O5'	C5'	H5'2	109.5°	109.5°
O5'	C5'	H5'1	109.6°	109.4°
O5'	PA	O1A	106.9°	109.5°
PA	O1A	H1	109.5°	114.0°
C3'	C4'	O4'	105.3°	107.3°
C4'	C3'	C2'	103.0°	104.2°
C4'	C3'	H3'	110.1°	110.5°
C3'	C4'	H4'	110.0°	109.9°
C4'	O4'	C1'	108.7°	107.0°
O4'	C4'	H4'	111.4°	109.7°
C3'	C2'	O2'	111.8°	110.9°
C3'	C2'	C1'	102.6°	102.1°
C3'	C2'	H2'	109.9°	110.9°
C2'	C3'	H3'	110.1°	110.5°
O2'	C2'	C1'	110.7°	110.9°
O2'	C2'	H2'	111.6°	110.8°
C2'	O2'	HO2'	109.5°	114.1°
O4'	C1'	C2'	108.9°	103.6°
O4'	C1'	N9	109.5°	110.7°
O4'	C1'	H1'	111.3°	110.6°
C2'	C1'	N9	105.9°	110.6°
C2'	C1'	H1'	109.9°	110.6°
C1'	C2'	H2'	109.9°	110.9°
C1'	N9	C8	125.5°	126.2°
C1'	N9	C4	126.5°	126.3°
N9	C1'	H1'	111.1°	110.6°
C8	N9	C4	107.9°	107.4°
N9	C8	N7	109.9°	109.9°
N9	C8	H8	125.1°	125.1°
N9	C4	N3	134.6°	134.9°
N9	C4	C5	105.6°	106.0°
C8	N7	C5	108.8°	109.5°
N7	C8	H8	125.0°	125.0°
N7	C5	C4	107.8°	107.1°
N7	C5	C6	134.2°	134.6°
N3	C4	C5	119.8°	119.1°
C4	N3	C2	119.7°	120.6°
C4	C5	C6	118.0°	118.2°
N3	C2	F2	118.5°	118.8°
N3	C2	N1	123.2°	122.3°
C5	C6	N1	118.6°	118.5°
C5	C6	N6	119.9°	120.8°
F2	C2	N1	118.3°	118.9°
C2	N1	C6	120.7°	121.2°
N1	C6	N6	121.5°	120.7°
C6	N6	HN62	109.5°	120.0°
C6	N6	HN61	109.5°	120.0°
H5'2	C5'	H5'1	109.5°	109.5°
HN62	N6	HN61	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1G	PG	O3G	O3B	120.2°	120.0°
O1G	PG	O3G	O2G	121.3°	120.0°
O1G	PG	O3B	O2G	118.5°	120.0°
O1G	PG	O3B	PB	124.6°	40.0°
O1G	PG	O2G	H3	0.0°	180.0°
O1G	PG	O3G	H4	0.0°	60.0°
O3G	PG	O3B	O2G	119.6°	120.0°
O3G	PG	O3B	PB	2.8°	160.0°
O3G	PG	O2G	H3	121.6°	60.0°
PG	O3B	PB	O1B	44.4°	45.0°
PG	O3B	PB	O2B	163.1°	74.9°
PG	O3B	PB	O3A	83.8°	165.0°
O3B	PG	O2G	H3	117.0°	60.0°
O3B	PG	O3G	H4	120.3°	180.0°
O2G	PG	O3B	PB	116.8°	80.0°
O2G	PG	O3G	H4	121.3°	60.0°
O1B	PB	O3B	O2B	118.7°	119.9°
O1B	PB	O3B	O3A	128.2°	120.0°
O1B	PB	O2B	O3A	123.4°	120.0°
O1B	PB	O3A	PA	5.5°	40.0°
O1B	PB	O2B	H2	0.0°	180.0°
O3B	PB	O2B	O3A	116.6°	120.1°
O3B	PB	O3A	PA	121.8°	159.9°
O3B	PB	O2B	H2	120.0°	60.1°
O2B	PB	O3A	PA	126.7°	80.0°
PB	O3A	PA	O2A	12.6°	40.0°
PB	O3A	PA	O5'	111.3°	160.0°
PB	O3A	PA	O1A	134.1°	79.9°
O3A	PB	O2B	H2	123.4°	60.0°
O2A	PA	O3A	O5'	123.9°	120.0°
O2A	PA	O3A	O1A	121.4°	120.0°
O2A	PA	O5'	C5'	47.5°	55.1°
O2A	PA	O5'	O1A	121.2°	120.0°
O2A	PA	O1A	H1	0.0°	179.9°
O3A	PA	O5'	C5'	77.2°	175.0°
O3A	PA	O5'	O1A	114.1°	120.1°
O3A	PA	O1A	H1	122.5°	60.0°
O3'	C3'	C4'	C5'	88.7°	119.8°
O3'	C3'	C4'	C2'	118.1°	118.7°
O3'	C3'	C4'	H3'	124.5°	122.6°
O3'	C3'	C4'	O4'	152.5°	120.6°
O3'	C3'	C2'	H3'	123.9°	122.5°
O3'	C3'	C2'	O2'	28.4°	20.3°
O3'	C3'	C2'	C1'	147.0°	97.9°
O3'	C3'	C2'	H2'	96.1°	143.9°
O3'	C3'	C4'	H4'	32.4°	1.3°
C4'	C5'	O5'	H5'2	119.9°	120.1°
C4'	C5'	O5'	H5'1	119.9°	120.0°
C4'	C5'	O5'	PA	137.6°	180.0°
C5'	C4'	C3'	O4'	118.8°	119.6°
C5'	C4'	C3'	H4'	121.0°	121.1°
C5'	C4'	O4'	H4'	122.8°	121.2°
C5'	C4'	C3'	C2'	153.2°	121.5°
C5'	C4'	O4'	C1'	144.7°	145.7°
C5'	C4'	C3'	H3'	35.8°	2.8°
C4'	C5'	H5'2	H5'1	120.2°	120.0°
C5'	O5'	PA	O1A	168.7°	64.9°
O5'	C5'	C4'	C3'	58.2°	175.0°
O5'	C5'	C4'	O4'	57.3°	67.0°
O5'	C5'	C4'	H4'	179.2°	54.0°
O5'	C5'	H5'2	H5'1	120.2°	120.0°
PA	O5'	C5'	H5'2	102.5°	59.9°
PA	O5'	C5'	H5'1	17.7°	60.1°
O5'	PA	O1A	H1	121.5°	60.1°
C3'	C4'	O4'	H4'	119.2°	119.3°
C4'	C3'	C2'	H3'	117.4°	118.7°
C4'	C3'	C2'	O2'	90.3°	139.1°
C3'	C4'	O4'	C1'	26.7°	26.3°
C4'	C3'	C2'	C1'	28.3°	20.8°
C4'	C3'	C2'	H2'	145.3°	97.3°
C3'	C4'	C5'	H5'2	178.2°	55.0°
C3'	C4'	C5'	H5'1	61.7°	65.0°
C4'	C3'	O3'	HO3'	180.0°	176.3°
O4'	C4'	C3'	C2'	34.4°	1.9°
C4'	O4'	C1'	C2'	8.2°	39.8°
C4'	O4'	C1'	N9	123.6°	158.4°
C4'	O4'	C1'	H1'	113.1°	78.7°
O4'	C4'	C3'	H3'	83.0°	116.8°
O4'	C4'	C5'	H5'2	62.6°	172.9°
O4'	C4'	C5'	H5'1	177.2°	52.9°
C3'	C2'	O2'	C1'	113.7°	112.7°
C3'	C2'	O2'	H2'	123.5°	123.6°
C3'	C2'	C1'	O4'	13.5°	36.9°
C3'	C2'	C1'	H2'	116.9°	118.2°
C3'	C2'	C1'	N9	104.2°	155.5°
C3'	C2'	C1'	H1'	135.7°	81.6°
C2'	C3'	C4'	H4'	85.7°	117.4°
C3'	C2'	O2'	HO2'	180.0°	67.3°
C2'	C3'	O3'	HO3'	66.4°	61.5°
O2'	C2'	C1'	O4'	105.9°	155.1°
O2'	C2'	C1'	H2'	123.7°	123.6°
O2'	C2'	C1'	N9	136.4°	86.2°
O2'	C2'	C1'	H1'	16.3°	36.6°
O2'	C2'	C3'	H3'	152.3°	102.2°
O4'	C1'	C2'	N9	117.7°	118.7°
O4'	C1'	C2'	H1'	122.2°	118.5°
O4'	C1'	N9	H1'	123.4°	122.9°
O4'	C1'	N9	C8	49.8°	21.4°
O4'	C1'	N9	C4	131.4°	158.6°
O4'	C1'	C2'	H2'	130.4°	81.3°
C1'	O4'	C4'	H4'	92.5°	93.1°
C2'	C1'	N9	H1'	119.3°	122.8°
C2'	C1'	N9	C8	67.6°	92.9°
C2'	C1'	N9	C4	111.3°	87.1°
C1'	C2'	C3'	H3'	89.1°	139.6°
C1'	C2'	O2'	HO2'	66.3°	180.0°
C1'	N9	C8	C4	179.0°	180.0°
C1'	N9	C8	N7	179.5°	180.0°
C1'	N9	C4	N3	0.9°	0.0°
C1'	N9	C4	C5	179.4°	180.0°
N9	C1'	C2'	H2'	12.7°	37.4°
C1'	N9	C8	H8	0.5°	0.0°
N9	C8	N7	H8	180.0°	179.9°
N9	C8	N7	C5	0.3°	0.0°
C8	N9	C4	N3	179.9°	180.0°
C8	N9	C4	C5	0.5°	0.0°
C8	N9	C1'	H1'	173.2°	144.3°
C4	N9	C8	N7	0.5°	0.0°
N9	C4	C5	N7	0.3°	0.0°
N9	C4	N3	C5	179.6°	180.0°
N9	C4	N3	C2	179.6°	180.0°
N9	C4	C5	C6	179.7°	180.0°
C4	N9	C1'	H1'	8.0°	35.7°
C4	N9	C8	H8	179.5°	180.0°
C8	N7	C5	C4	0.0°	0.0°
C8	N7	C5	C6	180.0°	179.9°
N7	C5	C4	N3	180.0°	180.0°
N7	C5	C4	C6	180.0°	179.9°
N7	C5	C6	N1	180.0°	180.0°
N7	C5	C6	N6	0.2°	0.1°
C5	N7	C8	H8	179.7°	179.9°
N3	C4	C5	C6	0.0°	0.0°
C4	N3	C2	F2	180.0°	180.0°
C4	N3	C2	N1	0.0°	0.0°
C5	C4	N3	C2	0.0°	0.0°
C4	C5	C6	N1	0.1°	0.1°
C4	C5	C6	N6	179.9°	180.0°
N3	C2	F2	N1	180.0°	180.0°
N3	C2	N1	C6	0.1°	0.1°
C5	C6	N1	C2	0.1°	0.1°
C5	C6	N1	N6	179.8°	179.9°
C5	C6	N6	HN62	179.8°	0.1°
C5	C6	N6	HN61	60.2°	180.0°
F2	C2	N1	C6	179.9°	180.0°
C2	N1	C6	N6	179.9°	180.0°
N1	C6	N6	HN62	0.0°	180.0°
N1	C6	N6	HN61	120.0°	0.0°
C6	N6	HN62	HN61	120.0°	180.0°
H1'	C1'	C2'	H2'	107.4°	160.2°
H2'	C2'	C3'	H3'	27.9°	21.4°
H2'	C2'	O2'	HO2'	56.5°	56.3°
H3'	C3'	C4'	H4'	156.9°	123.9°
H3'	C3'	O3'	HO3'	56.5°	61.1°
H4'	C4'	C5'	H5'2	60.9°	66.1°
H4'	C4'	C5'	H5'1	59.2°	173.9°

Release date:	2019-09-11
Definition date:	2019-03-25
Last modified:	2019-09-06
Release status:	REL
Processing site:	RCSB
Derived from:	6R5E