Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

JSJ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2doub1.32Å1.33ÅAromatic
N1C6sing1.33Å1.34ÅAromatic
N6C6sing1.38Å1.35Å
C2N3sing1.32Å1.33ÅAromatic
C6C5doub1.41Å1.48ÅAromatic
N3C4doub1.33Å1.34ÅAromatic
C5C4sing1.41Å1.46ÅAromatic
C5N7sing1.35Å1.35ÅAromatic
C4N9sing1.37Å1.32ÅAromatic
N7C8doub1.30Å1.35ÅAromatic
N9C8sing1.36Å1.33ÅAromatic
N9C1'sing1.46Å1.46Å
C1'O4'sing1.44Å1.42Å
C1'C2'sing1.54Å1.51Å
O2'C2'sing1.43Å1.43Å
O4'C4'sing1.44Å1.42Å
C2'C3'sing1.55Å1.50Å
O3'C3'sing1.43Å1.43Å
C4'C3'sing1.54Å1.52Å
C4'C5'sing1.53Å1.53Å
C5'O5'sing1.43Å1.43Å
O5'PAsing1.61Å1.61Å
O1APAdoub1.48Å1.50Å
PAO2Asing1.61Å1.50Å
PAO3Asing1.61Å1.60Å
O3APBsing1.61Å1.60Å
O2BPBdoub1.48Å1.50Å
C18C10sing1.53Å1.52Å
O1BPBsing1.61Å1.51Å
PBS1sing2.12Å1.88Å
C10C17sing1.53Å1.52Å
C10C11sing1.51Å1.51Å
C10N10sing1.48Å1.48Å
S1S2sing2.05Å2.06Å
C11C12doub1.31Å1.34Å
S2C13sing1.81Å1.71Å
N10O6sing1.46Å1.47Å
N10C14sing1.48Å1.48Å
C12C13sing1.51Å1.18Å
C12C14sing1.51Å1.52Å
C14C15sing1.53Å1.52Å
C14C16sing1.53Å1.53Å
C1'H1sing1.09Å1.10Å
C11H2sing1.08Å1.08Å
C13H3sing1.09Å1.10Å
C13H4sing1.09Å1.10Å
C15H5sing1.09Å1.10Å
C15H6sing1.09Å1.10Å
C15H7sing1.09Å1.10Å
C16H8sing1.09Å1.10Å
C16H9sing1.09Å1.10Å
C16H10sing1.09Å1.10Å
C17H11sing1.09Å1.10Å
C17H12sing1.09Å1.10Å
C17H13sing1.09Å1.10Å
C18H14sing1.09Å1.10Å
C18H15sing1.09Å1.10Å
C18H16sing1.09Å1.10Å
C2H17sing1.08Å1.08Å
C2'H18sing1.09Å1.10Å
C3'H19sing1.09Å1.10Å
C4'H20sing1.09Å1.10Å
C5'H21sing1.09Å1.10Å
C5'H22sing1.09Å1.10Å
C8H23sing1.08Å1.08Å
N6H24sing0.97Å1.00Å
N6H25sing0.97Å1.00Å
O1BH26sing0.97Å0.95Å
O2'H27sing0.97Å0.95Å
O2AH28sing0.97Å0.95Å
O3'H29sing0.97Å0.95Å
O6H30sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6121.6°121.1°
N1C2N3123.3°122.5°
N1C2H17118.4°118.7°
N1C6N6119.1°120.7°
N1C6C5118.4°118.5°
N6C6C5122.4°120.8°
C6N6H24109.5°119.9°
C6N6H25109.5°120.0°
C2N3C4121.5°120.7°
N3C2H17118.3°118.8°
C6C5C4116.2°118.1°
C6C5N7137.7°134.7°
N3C4C5119.0°119.1°
N3C4N9134.8°135.0°
C4C5N7106.1°107.2°
C5C4N9106.2°105.9°
C5N7C8108.1°109.4°
C4N9C8109.8°107.4°
C4N9C1'124.5°126.2°
N7C8N9109.9°110.0°
N7C8H23125.1°125.0°
C8N9C1'125.7°126.3°
N9C8H23125.1°125.0°
N9C1'O4'108.1°110.3°
N9C1'C2'104.6°110.4°
N9C1'H1111.9°110.4°
O4'C1'C2'108.1°104.8°
C1'O4'C4'110.9°105.3°
O4'C1'H1112.6°110.3°
C1'C2'O2'109.4°110.5°
C1'C2'C3'104.1°104.0°
C2'C1'H1111.2°110.4°
C1'C2'H18110.5°110.5°
O2'C2'C3'110.1°110.5°
O2'C2'H18111.7°110.6°
C2'O2'H27109.5°114.0°
O4'C4'C3'106.3°104.8°
O4'C4'C5'108.5°110.4°
O4'C4'H20110.6°110.5°
C2'C3'O3'106.7°110.5°
C2'C3'C4'105.2°104.0°
C3'C2'H18110.7°110.6°
C2'C3'H19111.1°110.4°
O3'C3'C4'110.6°110.7°
O3'C3'H19112.2°110.5°
C3'O3'H29109.5°114.1°
C3'C4'C5'113.1°110.3°
C4'C3'H19110.8°110.6°
C3'C4'H20109.2°110.4°
C4'C5'O5'110.3°109.5°
C5'C4'H20109.1°110.3°
C4'C5'H21109.3°109.5°
C4'C5'H22109.3°109.4°
C5'O5'PA123.4°123.0°
O5'C5'H21109.2°109.5°
O5'C5'H22109.3°109.5°
O5'PAO1A108.1°109.5°
O5'PAO2A110.0°109.4°
O5'PAO3A104.1°109.5°
O1APAO2A120.2°109.4°
O1APAO3A105.0°109.5°
O2APAO3A108.2°109.5°
PAO2AH28109.5°114.0°
PAO3APB117.3°134.0°
O3APBO2B101.9°109.5°
O3APBO1B100.9°109.5°
O3APBS1106.2°109.5°
O2BPBO1B114.0°109.5°
O2BPBS1114.0°109.5°
C18C10C17111.5°110.3°
C18C10C11110.3°110.3°
C18C10N10110.1°110.3°
C10C18H14109.5°109.4°
C10C18H15109.5°109.5°
C10C18H16109.5°109.5°
O1BPBS1117.3°109.5°
PBO1BH26109.5°114.0°
PBS1S2105.4°103.0°
C17C10C11109.8°110.3°
C17C10N10112.0°110.2°
C10C17H11109.5°109.4°
C10C17H12109.5°109.5°
C10C17H13109.5°109.5°
C11C10N10102.8°105.4°
C10C11C12111.2°109.4°
C10C11H2124.4°125.3°
C10N10O6123.8°111.0°
C10N10C14111.9°102.8°
S1S2C13129.6°103.0°
C11C12C13110.9°125.3°
C11C12C14111.8°109.4°
C12C11H2124.4°125.3°
S2C13C12119.0°109.5°
S2C13H3107.0°109.5°
S2C13H4107.0°109.5°
O6N10C14124.3°111.0°
N10O6H30109.5°114.0°
N10C14C12102.3°105.4°
N10C14C15109.8°110.3°
N10C14C16110.5°110.4°
C13C12C14136.8°125.3°
C12C13H3107.0°109.5°
C12C13H4107.0°109.4°
C12C14C15112.1°110.2°
C12C14C16110.5°110.2°
C15C14C16111.3°110.2°
C14C15H5109.5°109.5°
C14C15H6109.5°109.5°
C14C15H7109.5°109.5°
C14C16H8109.5°109.5°
C14C16H9109.5°109.4°
C14C16H10109.5°109.5°
H3C13H4109.5°109.5°
H5C15H6109.4°109.5°
H5C15H7109.5°109.5°
H6C15H7109.5°109.4°
H8C16H9109.5°109.4°
H8C16H10109.5°109.5°
H9C16H10109.5°109.5°
H11C17H12109.5°109.4°
H11C17H13109.4°109.4°
H12C17H13109.5°109.5°
H14C18H15109.4°109.5°
H14C18H16109.5°109.5°
H15C18H16109.5°109.4°
H21C5'H22109.5°109.5°
H24N6H25109.5°120.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6N6179.8°179.7°
N1C2N3H17180.0°179.7°
C2N1C6C50.3°0.5°
N1C2N3C40.3°0.3°
N1C6N6C5179.9°179.2°
C6N1C2N30.2°0.0°
N1C6C5C40.4°0.8°
N1C6C5N7179.7°179.9°
C6N1C2H17179.8°179.7°
N1C6N6H240.0°179.2°
N1C6N6H25120.0°0.9°
N6C6C5C4179.7°180.0°
N6C6C5N70.2°0.7°
C6N6H24H25120.0°179.9°
C2N3C4C50.4°0.0°
C2N3C4N9179.1°180.0°
C6C5C4N30.5°0.5°
C6C5C4N7180.0°179.5°
C6C5C4N9179.5°179.5°
C6C5N7C8179.9°179.3°
C5C6N6H24179.9°0.1°
C5C6N6H2559.9°180.0°
N3C4C5N9179.1°180.0°
N3C4C5N7179.6°180.0°
N3C4N9C8179.7°180.0°
N3C4N9C1'2.0°0.0°
C4N3C2H17179.7°180.0°
C4C5N7C80.0°0.0°
C5C4N9C80.9°0.0°
C5C4N9C1'179.2°180.0°
N7C5C4N90.5°0.0°
C5N7C8N90.6°0.0°
C5N7C8H23179.4°180.0°
C4N9C8N70.9°0.0°
C4N9C8C1'178.3°180.0°
C4N9C1'O4'170.4°156.5°
C4N9C1'C2'55.4°88.1°
C4N9C1'H165.1°34.2°
C4N9C8H23179.1°180.0°
N7C8N9H23180.0°180.0°
N7C8N9C1'179.2°180.0°
C8N9C1'O4'7.6°23.5°
C8N9C1'C2'122.6°91.9°
C8N9C1'H1116.9°145.8°
N9C1'O4'C2'112.7°118.9°
N9C1'O4'H1124.1°122.3°
N9C1'C2'H1120.9°122.4°
N9C1'C2'O2'111.5°98.6°
N9C1'O4'C4'114.8°159.4°
N9C1'C2'C3'130.9°142.8°
N9C1'C2'H1812.0°24.1°
C1'N9C8H230.8°0.0°
O4'C1'C2'H1124.1°118.8°
O4'C1'C2'O2'133.6°142.6°
O4'C1'C2'C3'15.9°24.0°
C1'O4'C4'C3'12.4°40.5°
C1'O4'C4'C5'109.5°159.3°
O4'C1'C2'H18103.0°94.7°
C1'O4'C4'H20130.8°78.4°
C1'C2'O2'C3'113.8°114.6°
C1'C2'O2'H18122.8°122.6°
C2'C1'O4'C4'2.2°40.5°
C1'C2'C3'H18118.8°118.6°
C1'C2'C3'O3'94.8°118.8°
C1'C2'C3'C4'22.7°0.0°
C1'C2'C3'H19142.6°118.7°
C1'C2'O2'H27180.0°180.0°
O2'C2'C3'H18124.0°122.7°
O2'C2'C3'O3'22.4°0.2°
O2'C2'C3'C4'139.9°118.6°
O2'C2'C1'H19.5°23.8°
O2'C2'C3'H19100.2°122.7°
O4'C4'C3'C2'22.0°24.0°
O4'C4'C3'O3'92.9°142.7°
O4'C4'C3'C5'118.9°118.8°
O4'C4'C3'H20119.4°119.0°
O4'C4'C5'H20120.6°122.4°
O4'C4'C5'O5'82.3°69.6°
C4'O4'C1'H1121.0°78.3°
O4'C4'C3'H19142.2°94.6°
O4'C4'C5'H21157.6°170.4°
O4'C4'C5'H2237.8°50.3°
C2'C3'O3'C4'113.9°114.7°
C2'C3'O3'H19121.9°122.5°
C2'C3'C4'H19120.1°118.6°
C2'C3'C4'C5'96.9°142.8°
C3'C2'C1'H1108.2°94.8°
C2'C3'C4'H20141.4°95.0°
C3'C2'O2'H2766.2°65.3°
C2'C3'O3'H29180.0°61.4°
O3'C3'C4'H19125.0°122.7°
O3'C3'C4'C5'148.2°98.5°
O3'C3'C2'H18146.4°122.6°
O3'C3'C4'H2026.5°23.6°
C3'C4'C5'H20121.8°122.2°
C3'C4'C5'O5'160.1°175.0°
C4'C3'C2'H1896.1°118.6°
C3'C4'C5'H2139.9°55.0°
C3'C4'C5'H2279.8°65.0°
C4'C3'O3'H2966.1°176.1°
C4'C5'O5'H21120.1°120.0°
C4'C5'O5'H22120.1°119.9°
C4'C5'O5'PA170.4°180.0°
C5'C4'C3'H1923.2°24.2°
C4'C5'H21H22119.6°120.0°
C5'O5'PAO1A169.3°55.0°
C5'O5'PAO2A36.3°65.0°
C5'O5'PAO3A79.4°175.0°
O5'C5'C4'H2038.3°52.8°
O5'C5'H21H22119.6°120.0°
O5'PAO1AO2A127.3°119.9°
O5'PAO1AO3A110.7°120.0°
O5'PAO2AO3A113.1°120.0°
O5'PAO3APB144.1°160.0°
PAO5'C5'H2150.3°60.0°
PAO5'C5'H2269.4°60.0°
O5'PAO2AH28126.5°60.0°
O1APAO2AO3A120.4°120.1°
O1APAO3APB102.3°40.0°
O1APAO2AH280.0°180.0°
O2APAO3APB27.2°80.0°
PAO3APBO2B42.8°60.0°
PAO3APBO1B74.9°60.0°
PAO3APBS1162.3°180.0°
O3APAO2AH28120.4°60.0°
O3APBO2BO1B107.8°120.0°
O3APBO2BS1113.9°120.0°
O3APBO1BS1114.7°120.0°
O3APBS1S269.5°180.0°
O3APBO1BH26108.4°60.0°
O2BPBO1BS1136.9°120.0°
O2BPBS1S2179.1°60.0°
O2BPBO1BH260.0°180.0°
C18C10C17C11122.5°122.0°
C18C10C17N10123.9°122.1°
C18C10C11N10117.4°119.1°
C18C10C11C12117.5°136.0°
C18C10N10O662.9°96.1°
C18C10N10C14118.5°145.2°
C18C10C11H262.5°43.9°
C18C10C17H11180.0°63.0°
C18C10C17H1260.0°57.0°
C18C10C17H1360.0°177.1°
C10C18H14H15120.0°120.0°
C10C18H14H16120.0°120.0°
C10C18H15H16120.0°120.0°
O1BPBS1S242.3°60.0°
PBS1S2C13119.9°85.0°
S1PBO1BH26136.9°60.0°
C17C10C11N10119.4°118.9°
C17C10C11C12119.2°102.0°
C17C10N10O661.7°25.9°
C17C10N10C14116.8°92.8°
C17C10C11H260.8°78.1°
C10C17H11H12120.0°120.0°
C10C17H11H13120.0°120.0°
C10C17H12H13120.0°120.1°
C17C10C18H14180.0°59.3°
C17C10C18H1560.0°179.3°
C17C10C18H1660.0°60.7°
C10C11C12H2180.0°180.0°
C11C10N10O6179.5°144.9°
C11C10N10C141.0°26.2°
C10C11C12C13174.0°180.0°
C10C11C12C140.7°0.0°
C11C10C17H1157.5°59.0°
C11C10C17H1262.6°179.0°
C11C10C17H13177.5°60.9°
C11C10C18H1457.8°62.7°
C11C10C18H15177.7°57.3°
C11C10C18H1662.2°177.3°
N10C10C11C120.2°17.0°
C10N10O6C14178.4°113.6°
C10N10C14C121.3°26.2°
C10N10C14C15120.6°145.1°
C10N10C14C16116.4°92.8°
N10C10C11H2179.9°163.0°
N10C10C17H1156.1°175.0°
N10C10C17H12176.1°65.0°
N10C10C17H1363.9°55.0°
N10C10C18H1455.0°178.7°
N10C10C18H1564.9°58.7°
N10C10C18H16175.0°61.3°
C10N10O6H30180.0°59.9°
S1S2C13C12131.8°75.8°
S1S2C13H310.5°44.2°
S1S2C13H4106.9°164.2°
C11C12C13S249.1°102.5°
C11C12C14N101.2°17.0°
C11C12C13C14170.9°180.0°
C11C12C14C15118.8°136.0°
C11C12C14C16116.5°102.1°
C11C12C13H3170.4°17.5°
C11C12C13H472.3°137.5°
S2C13C12H3121.3°120.0°
S2C13C12H4121.3°120.0°
S2C13C12C14140.0°77.4°
S2C13H3H4115.7°120.0°
O6N10C14C12179.9°144.9°
O6N10C14C1560.9°96.1°
O6N10C14C1662.2°25.9°
N10C14C12C13172.1°163.0°
N10C14C12C15117.6°119.0°
N10C14C12C16117.7°119.1°
N10C14C15C16122.6°122.1°
N10C14C15H5180.0°175.9°
N10C14C15H660.0°64.0°
N10C14C15H760.0°55.9°
N10C14C16H8180.0°63.3°
N10C14C16H960.0°56.6°
N10C14C16H1060.0°176.6°
C14N10O6H301.6°173.6°
C13C12C14C1570.4°44.0°
C13C12C14C1654.4°77.9°
C13C12C11H26.0°0.0°
C12C13H3H4115.7°119.9°
C12C14C15C16124.3°121.9°
C14C12C11H2179.3°180.0°
C14C12C13H318.7°162.5°
C14C12C13H498.6°42.6°
C12C14C15H567.0°60.0°
C12C14C15H6173.0°180.0°
C12C14C15H753.0°60.1°
C12C14C16H867.5°52.7°
C12C14C16H952.5°172.6°
C12C14C16H10172.5°67.4°
C14C15H5H6120.0°120.0°
C14C15H5H7120.0°120.0°
C14C15H6H7120.0°120.0°
C15C14C16H857.8°174.6°
C15C14C16H9177.8°65.5°
C15C14C16H1062.2°54.5°
C16C14C15H557.4°62.0°
C16C14C15H662.6°58.1°
C16C14C15H7177.4°178.0°
C14C16H8H9120.0°119.9°
C14C16H8H10120.0°120.1°
C14C16H9H10120.0°120.0°
H1C1'C2'H18133.0°146.5°
H5C15H6H7120.0°120.0°
H8C16H9H10120.0°120.0°
H11C17H12H13119.9°119.9°
H14C18H15H16120.0°120.0°
H18C2'C3'H1923.8°0.0°
H18C2'O2'H2757.3°57.4°
H19C3'C4'H2098.5°146.4°
H19C3'O3'H2958.1°61.1°
H20C4'C5'H2181.8°67.2°
H20C4'C5'H22158.4°172.7°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon