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JSA

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C12C11sing1.53Å1.53Å
C11C10sing1.53Å1.53Å
C10C9'sing1.53Å1.53Å
C9'C8'sing1.53Å1.53Å
C8'C7'sing1.53Å1.53Å
N6C6sing1.38Å1.33Å
C7'C6'sing1.53Å1.53Å
N1C6doub1.33Å1.34ÅAromatic
N1C2sing1.32Å1.32ÅAromatic
C6C5sing1.41Å1.39ÅAromatic
C2N3doub1.32Å1.32ÅAromatic
C6'C5'sing1.53Å1.53Å
C5N7sing1.35Å1.33ÅAromatic
C5C4doub1.41Å1.39ÅAromatic
N7C8doub1.30Å1.33ÅAromatic
N3C4sing1.33Å1.34ÅAromatic
C4N9sing1.37Å1.33ÅAromatic
O3'C3Asing1.43Å1.43Å
C8N9sing1.36Å1.33ÅAromatic
C5'C4'sing1.53Å1.53Å
C3AC2Asing1.55Å1.53Å
C3AC4Asing1.54Å1.53Å
N9C1Asing1.46Å1.48Å
C2AO2'sing1.43Å1.43Å
C2AC1Asing1.55Å1.53Å
C4'C3'sing1.53Å1.53Å
C1AO4'sing1.44Å1.44Å
C3'C2'sing1.53Å1.53Å
C2'C1'sing1.53Å1.53Å
C4AC5Asing1.53Å1.53Å
C4AO4'sing1.44Å1.44Å
C1'N8sing1.47Å1.47Å
C1'O1sing1.43Å1.43Å
C5AO5'sing1.43Å1.43Å
N8S1sing1.66Å1.63Å
O5'S1sing1.52Å1.43Å
S1O2Pdoub1.42Å1.50Å
S1O1Pdoub1.42Å1.50Å
C2H1sing1.08Å1.08Å
C12H2sing1.09Å1.10Å
C12H3sing1.09Å1.10Å
C12H4sing1.09Å1.10Å
C11H5sing1.09Å1.10Å
C11H6sing1.09Å1.10Å
C10H7sing1.09Å1.10Å
C10H8sing1.09Å1.10Å
C9'H9sing1.09Å1.10Å
C9'H10sing1.09Å1.10Å
C8'H11sing1.09Å1.10Å
C8'H12sing1.09Å1.10Å
C7'H13sing1.09Å1.10Å
C7'H14sing1.09Å1.10Å
C6'H15sing1.09Å1.10Å
C6'H16sing1.09Å1.10Å
C5'H17sing1.09Å1.10Å
C5'H18sing1.09Å1.10Å
C4'H19sing1.09Å1.10Å
C4'H20sing1.09Å1.10Å
C3'H21sing1.09Å1.10Å
C3'H22sing1.09Å1.10Å
C2'H23sing1.09Å1.10Å
C2'H24sing1.09Å1.10Å
C1'H25sing1.09Å1.10Å
O1H26sing0.97Å0.95Å
N8H27sing0.97Å1.00Å
C5AH28sing1.09Å1.10Å
C5AH29sing1.09Å1.10Å
C4AH30sing1.09Å1.10Å
C3AH31sing1.09Å1.10Å
O3'H32sing0.97Å0.95Å
C2AH33sing1.09Å1.10Å
O2'H34sing0.97Å0.95Å
C1AH35sing1.09Å1.10Å
C8H36sing1.08Å1.08Å
N6H37sing0.97Å1.00Å
N6H38sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C12C11C10110.8°109.4°
C11C12H2109.5°109.4°
C11C12H3109.4°109.5°
C11C12H4109.5°109.5°
C12C11H5109.2°109.5°
C12C11H6109.2°109.4°
C11C10C9'111.5°109.5°
C10C11H5109.1°109.5°
C10C11H6109.2°109.5°
C11C10H7109.0°109.5°
C11C10H8109.0°109.5°
C10C9'C8'110.3°109.5°
C9'C10H7108.9°109.4°
C9'C10H8109.0°109.5°
C10C9'H9109.3°109.4°
C10C9'H10109.3°109.5°
C9'C8'C7'112.2°109.5°
C8'C9'H9109.3°109.5°
C8'C9'H10109.3°109.5°
C9'C8'H11108.8°109.4°
C9'C8'H12108.8°109.5°
C8'C7'C6'110.0°109.5°
C7'C8'H11108.8°109.5°
C7'C8'H12108.8°109.5°
C8'C7'H13109.4°109.5°
C8'C7'H14109.3°109.5°
N6C6N1120.3°120.8°
N6C6C5120.7°120.7°
C6N6H37109.5°120.0°
C6N6H38109.5°120.0°
C7'C6'C5'112.2°109.5°
C6'C7'H13109.3°109.4°
C6'C7'H14109.4°109.5°
C7'C6'H15108.8°109.4°
C7'C6'H16108.8°109.5°
C6N1C2121.0°121.2°
N1C6C5119.0°118.5°
N1C2N3121.7°122.4°
N1C2H1119.1°118.8°
C6C5N7134.4°134.7°
C6C5C4118.3°118.2°
C2N3C4120.5°120.7°
N3C2H1119.1°118.8°
C6'C5'C4'110.2°109.5°
C5'C6'H15108.8°109.4°
C5'C6'H16108.8°109.5°
C6'C5'H17109.3°109.4°
C6'C5'H18109.3°109.5°
N7C5C4107.4°107.1°
C5N7C8107.8°109.5°
C5C4N3119.5°119.0°
C5C4N9107.2°106.0°
N7C8N9109.7°110.0°
N7C8H36125.2°125.0°
N3C4N9133.3°134.9°
C4N9C8108.0°107.4°
C4N9C1A125.7°126.3°
O3'C3AC2A109.2°110.5°
O3'C3AC4A109.0°110.5°
O3'C3AH31114.2°110.5°
C3AO3'H32109.5°114.0°
C8N9C1A126.2°126.3°
N9C8H36125.2°125.0°
C5'C4'C3'110.6°109.5°
C4'C5'H17109.3°109.4°
C4'C5'H18109.3°109.5°
C5'C4'H19109.2°109.4°
C5'C4'H20109.2°109.5°
C2AC3AC4A98.2°104.2°
C3AC2AO2'109.8°110.9°
C3AC2AC1A100.9°102.1°
C2AC3AH31112.6°110.5°
C3AC2AH33111.4°111.0°
C3AC4AC5A111.1°109.9°
C3AC4AO4'104.4°107.3°
C3AC4AH30109.5°110.0°
C4AC3AH31112.5°110.5°
N9C1AC2A111.2°110.6°
N9C1AO4'106.9°110.6°
N9C1AH35110.8°110.6°
O2'C2AC1A110.0°110.9°
O2'C2AH33112.9°110.8°
C2AO2'H34109.5°114.0°
C2AC1AO4'106.3°103.4°
C1AC2AH33111.3°110.9°
C2AC1AH35110.1°110.6°
C4'C3'C2'111.8°109.5°
C3'C4'H19109.2°109.5°
C3'C4'H20109.2°109.5°
C4'C3'H21108.9°109.4°
C4'C3'H22108.9°109.5°
C1AO4'C4A107.7°107.0°
O4'C1AH35111.4°110.8°
C3'C2'C1'109.8°109.5°
C2'C3'H21108.9°109.4°
C2'C3'H22108.9°109.5°
C3'C2'H23109.4°109.5°
C3'C2'H24109.4°109.5°
C2'C1'N8111.1°109.5°
C2'C1'O1109.0°109.5°
C1'C2'H23109.4°109.4°
C1'C2'H24109.4°109.5°
C2'C1'H25108.3°109.5°
C5AC4AO4'111.6°109.9°
C4AC5AO5'111.3°109.4°
C4AC5AH28109.0°109.5°
C4AC5AH29109.0°109.5°
C5AC4AH30109.4°109.9°
O4'C4AH30110.7°109.9°
N8C1'O1109.7°109.4°
C1'N8S1112.4°120.0°
N8C1'H25109.1°109.5°
C1'N8H27108.7°120.0°
O1C1'H25109.7°109.4°
C1'O1H26109.5°114.0°
C5AO5'S1119.4°114.0°
O5'C5AH28109.0°109.5°
O5'C5AH29109.0°109.4°
N8S1O5'109.0°107.2°
N8S1O2P109.6°106.4°
N8S1O1P109.2°106.4°
S1N8H27108.8°120.0°
O5'S1O2P109.6°106.4°
O5'S1O1P109.6°106.4°
O2PS1O1P109.7°123.2°
H2C12H3109.5°109.5°
H2C12H4109.4°109.5°
H3C12H4109.5°109.5°
H5C11H6109.5°109.5°
H7C10H8109.4°109.5°
H9C9'H10109.5°109.4°
H11C8'H12109.5°109.5°
H13C7'H14109.5°109.4°
H15C6'H16109.5°109.5°
H17C5'H18109.5°109.5°
H19C4'H20109.5°109.5°
H21C3'H22109.5°109.5°
H23C2'H24109.4°109.4°
H28C5AH29109.5°109.5°
H37N6H38109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C12C11C10H5120.2°120.0°
C12C11C10H6120.2°120.0°
C12C11C10C9'179.9°180.0°
C11C12H2H3120.0°120.0°
C11C12H2H4120.0°120.0°
C11C12H3H4120.0°120.0°
C12C11H5H6119.4°120.0°
C12C11C10H759.8°60.0°
C12C11C10H859.6°60.0°
C11C10C9'H7120.3°120.0°
C11C10C9'H8120.3°120.0°
C11C10C9'C8'176.4°180.0°
C10C11C12H2180.0°60.0°
C10C11C12H360.0°60.0°
C10C11C12H460.0°180.0°
C10C11H5H6119.4°120.0°
C11C10H7H8119.1°120.0°
C11C10C9'H956.3°60.0°
C11C10C9'H1063.5°60.0°
C10C9'C8'H9120.1°120.0°
C10C9'C8'H10120.1°120.1°
C10C9'C8'C7'176.4°180.0°
C9'C10C11H559.7°60.0°
C9'C10C11H659.9°60.0°
C9'C10H7H8119.0°120.0°
C10C9'H9H10119.6°120.0°
C10C9'C8'H1163.2°60.0°
C10C9'C8'H1256.0°60.0°
C9'C8'C7'H11120.4°120.0°
C9'C8'C7'H12120.4°120.0°
C9'C8'C7'C6'174.0°180.0°
C8'C9'C10H763.3°60.0°
C8'C9'C10H856.1°60.0°
C8'C9'H9H10119.6°120.0°
C9'C8'H11H12118.8°120.0°
C9'C8'C7'H1353.9°60.0°
C9'C8'C7'H1465.9°59.9°
C8'C7'C6'H13120.1°120.0°
C8'C7'C6'H14120.1°120.0°
C8'C7'C6'C5'179.3°180.0°
C7'C8'C9'H956.2°60.0°
C7'C8'C9'H1063.5°60.0°
C7'C8'H11H12118.7°120.0°
C8'C7'H13H14119.8°120.0°
C8'C7'C6'H1560.2°60.0°
C8'C7'C6'H1658.9°60.0°
N6C6N1C5179.5°180.0°
N6C6N1C2179.6°179.7°
N6C6C5N70.1°0.1°
N6C6C5C4179.3°180.0°
C6N6H37H38120.0°179.9°
C7'C6'C5'H15120.4°119.9°
C7'C6'C5'H16120.4°120.0°
C7'C6'C5'C4'177.3°180.0°
C6'C7'C8'H1165.6°60.0°
C6'C7'C8'H1253.6°60.0°
C6'C7'H13H14119.8°120.0°
C7'C6'H15H16118.7°120.0°
C7'C6'C5'H1757.2°60.1°
C7'C6'C5'H1862.6°60.0°
C6N1C2N30.2°0.2°
N1C6C5N7179.4°179.9°
N1C6C5C40.2°0.0°
C6N1C2H1179.8°179.7°
N1C6N6H370.0°179.9°
N1C6N6H38120.0°0.1°
C2N1C6C50.1°0.2°
N1C2N3H1180.0°180.0°
N1C2N3C40.1°0.0°
C6C5N7C4179.3°179.9°
C6C5N7C8179.2°180.0°
C6C5C4N30.3°0.2°
C6C5C4N9179.1°180.0°
C5C6N6H37179.5°0.1°
C5C6N6H3859.5°179.9°
C2N3C4C50.2°0.3°
C2N3C4N9179.0°180.0°
C6'C5'C4'H17120.1°119.9°
C6'C5'C4'H18120.1°120.1°
C6'C5'C4'C3'63.3°180.0°
C5'C6'C7'H1359.3°60.0°
C5'C6'C7'H1460.6°59.9°
C5'C6'H15H16118.8°120.0°
C6'C5'H17H18119.6°120.0°
C6'C5'C4'H19176.5°60.1°
C6'C5'C4'H2056.8°59.9°
N7C5C4N3179.7°179.8°
N7C5C4N90.3°0.0°
C5N7C8N90.1°0.0°
C5N7C8H36179.9°180.0°
C4C5N7C80.2°0.0°
C5C4N3N9179.2°179.7°
C5C4N9C80.4°0.0°
C5C4N9C1A176.6°180.0°
N7C8N9C40.3°0.0°
N7C8N9H36180.0°180.0°
N7C8N9C1A176.7°180.0°
N3C4N9C8179.6°179.7°
N3C4N9C1A2.7°0.2°
C4N3C2H1179.9°180.0°
C4N9C8C1A177.0°180.0°
C4N9C1AC2A82.0°85.0°
C4N9C1AO4'162.3°161.0°
C4N9C1AH3540.7°37.9°
C4N9C8H36179.7°180.0°
O3'C3AC2AC4A113.5°118.7°
O3'C3AC2AH31127.9°122.6°
O3'C3AC4AH31127.7°122.6°
O3'C3AC2AO2'41.3°20.4°
O3'C3AC2AC1A157.3°97.8°
O3'C3AC4AC5A81.1°119.8°
O3'C3AC4AO4'158.4°120.8°
O3'C3AC4AH3039.9°1.3°
O3'C3AC2AH3384.5°144.0°
C8N9C1AC2A101.5°94.9°
C8N9C1AO4'14.1°19.1°
C8N9C1AH35135.7°142.2°
C5'C4'C3'H19120.2°119.9°
C5'C4'C3'H20120.2°120.1°
C5'C4'C3'C2'168.4°180.0°
C4'C5'C6'H1562.3°60.1°
C4'C5'C6'H1656.9°60.0°
C4'C5'H17H18119.7°120.0°
C5'C4'H19H20119.5°120.0°
C5'C4'C3'H2148.0°60.1°
C5'C4'C3'H2271.3°60.0°
C2AC3AC4AH31118.6°118.7°
C3AC2AC1AN986.5°155.5°
C3AC2AO2'C1A110.1°112.7°
C3AC2AO2'H33124.9°123.7°
C3AC2AC1AH33118.2°118.3°
C3AC2AC1AO4'29.5°37.0°
C2AC3AC4AC5A165.2°121.4°
C2AC3AC4AO4'44.8°2.0°
C2AC3AC4AH3073.8°117.5°
C2AC3AO3'H32180.0°61.4°
C3AC2AO2'H34180.0°61.4°
C3AC2AC1AH35150.3°81.6°
C4AC3AC2AO2'72.2°139.1°
C4AC3AC2AC1A43.8°20.9°
C3AC4AO4'C1A27.6°26.5°
C3AC4AC5AO4'116.1°117.8°
C3AC4AC5AH30121.0°121.2°
C3AC4AO4'H30117.7°119.6°
C3AC4AC5AO5'172.8°175.7°
C3AC4AC5AH2867.0°64.3°
C3AC4AC5AH2952.5°55.8°
C4AC3AO3'H3273.7°176.2°
C4AC3AC2AH33162.0°97.3°
N9C1AC2AO2'157.7°86.3°
N9C1AC2AO4'116.0°118.5°
N9C1AC2AH35123.2°122.9°
N9C1AO4'H35121.2°123.0°
N9C1AO4'C4A117.4°158.6°
N9C1AC2AH3331.7°37.2°
C1AN9C8H363.3°0.0°
O2'C2AC1AH33125.9°123.5°
O2'C2AC1AO4'86.3°155.3°
O2'C2AC3AH31169.2°102.3°
O2'C2AC1AH3534.5°36.6°
C2AC1AO4'H35119.9°118.5°
C2AC1AO4'C4A1.5°40.1°
C1AC2AC3AH3174.8°139.6°
C1AC2AO2'H3469.9°174.1°
C4'C3'C2'H21120.4°119.9°
C4'C3'C2'H22120.3°120.0°
C4'C3'C2'C1'179.1°180.0°
C3'C4'C5'H1756.8°60.1°
C3'C4'C5'H18176.6°60.0°
C3'C4'H19H20119.5°120.1°
C4'C3'H21H22118.9°120.0°
C4'C3'C2'H2360.8°60.0°
C4'C3'C2'H2459.0°59.9°
C1AO4'C4AC5A147.7°145.9°
C1AO4'C4AH3090.1°93.0°
O4'C1AC2AH33147.8°81.2°
C3'C2'C1'H23120.0°120.0°
C3'C2'C1'H24120.1°120.1°
C3'C2'C1'N8167.2°175.0°
C3'C2'C1'O171.9°65.0°
C2'C3'C4'H1971.4°60.1°
C2'C3'C4'H2048.2°59.9°
C2'C3'H21H22119.0°120.0°
C3'C2'H23H24119.8°120.0°
C3'C2'C1'H2547.3°55.0°
C2'C1'N8O1120.5°120.0°
C2'C1'N8H25119.4°120.1°
C2'C1'O1H25118.4°120.0°
C2'C1'N8S172.6°150.0°
C1'C2'C3'H2158.7°60.0°
C1'C2'C3'H2260.6°60.0°
C1'C2'H23H24119.9°120.0°
C2'C1'O1H2667.9°60.0°
C2'C1'N8H2747.9°30.0°
C5AC4AO4'H30122.2°121.0°
C4AC5AO5'H28120.3°120.0°
C4AC5AO5'H29120.3°119.9°
C4AC5AO5'S1159.5°180.0°
C4AC5AH28H29119.2°120.0°
C5AC4AC3AH3146.6°2.8°
O4'C4AC5AO5'56.7°66.5°
O4'C4AC5AH28177.0°53.5°
O4'C4AC5AH2963.6°173.6°
O4'C4AC3AH3173.9°116.6°
C4AO4'C1AH35121.4°78.5°
N8C1'O1H25119.8°119.9°
C1'N8S1H27120.4°179.9°
C1'N8S1O5'127.4°65.0°
C1'N8S1O2P7.4°178.5°
C1'N8S1O1P112.8°48.5°
N8C1'C2'H2372.8°65.0°
N8C1'C2'H2447.1°55.0°
N8C1'O1H2653.8°60.0°
O1C1'N8S147.9°90.0°
O1C1'C2'H2348.1°55.0°
O1C1'C2'H24168.0°175.0°
O1C1'N8H27168.4°90.1°
C5AO5'S1N88.1°75.0°
C5AO5'S1O2P128.1°38.5°
C5AO5'S1O1P111.5°171.5°
O5'C5AH28H29119.1°120.0°
O5'C5AC4AH3066.2°54.5°
N8S1O5'O2P120.0°113.5°
N8S1O5'O1P119.5°113.5°
N8S1O2PO1P120.0°122.9°
S1N8C1'H25168.1°29.9°
O5'S1O2PO1P120.4°123.0°
O5'S1N8H277.0°115.0°
S1O5'C5AH2880.2°60.0°
S1O5'C5AH2939.2°60.0°
O2PS1N8H27113.0°1.5°
O1PS1N8H27126.7°131.4°
H2C12H3H4120.0°120.0°
H2C12C11H559.8°60.0°
H2C12C11H659.8°NaN°
H3C12C11H560.2°180.0°
H3C12C11H6179.8°60.0°
H4C12C11H5179.8°60.0°
H4C12C11H660.2°60.0°
H5C11C10H7180.0°180.0°
H5C11C10H860.6°60.0°
H6C11C10H760.4°60.0°
H6C11C10H8179.8°NaN°
H7C10C9'H9176.6°180.0°
H7C10C9'H1056.8°60.1°
H8C10C9'H964.1°60.0°
H8C10C9'H10176.2°180.0°
H9C9'C8'H11176.7°180.0°
H9C9'C8'H1264.2°60.0°
H10C9'C8'H1156.9°60.1°
H10C9'C8'H12176.1°180.0°
H11C8'C7'H13174.3°180.0°
H11C8'C7'H1454.5°60.1°
H12C8'C7'H1366.5°60.0°
H12C8'C7'H14173.6°180.0°
H13C7'C6'H15179.7°179.9°
H13C7'C6'H1661.1°60.0°
H14C7'C6'H1559.8°60.0°
H14C7'C6'H16179.0°180.0°
H15C6'C5'H17177.5°180.0°
H15C6'C5'H1857.8°59.9°
H16C6'C5'H1763.2°59.9°
H16C6'C5'H18177.0°180.0°
H17C5'C4'H1963.4°180.0°
H17C5'C4'H20176.9°60.0°
H18C5'C4'H1956.4°60.0°
H18C5'C4'H2063.3°180.0°
H19C4'C3'H21168.2°180.0°
H19C4'C3'H2248.9°59.9°
H20C4'C3'H2172.1°60.0°
H20C4'C3'H22168.6°180.0°
H21C3'C2'H23178.8°180.0°
H21C3'C2'H2461.3°60.0°
H22C3'C2'H2359.5°60.0°
H22C3'C2'H24179.4°180.0°
H23C2'C1'H25167.4°175.0°
H24C2'C1'H2572.7°65.1°
H25C1'O1H26173.7°180.0°
H25C1'N8H2771.5°150.0°
H28C5AC4AH3054.0°174.6°
H29C5AC4AH30173.5°65.4°
H30C4AC3AH31167.6°123.9°
H31C3AO3'H3253.1°61.3°
H31C3AC2AH3343.4°21.3°
H33C2AO2'H3455.1°62.3°
H33C2AC1AH3591.5°160.1°

222624

PDB entries from 2024-07-17

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