JP5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O | C | doub | 1.21Å | 1.23Å | |
| C | ND2 | sing | 1.34Å | 1.37Å | |
| C | CA | sing | 1.51Å | 1.49Å | |
| ND2 | CG | sing | 1.34Å | 1.36Å | |
| OAK | CAI | doub | 1.22Å | 1.25Å | |
| CA | N | sing | 1.46Å | 1.45Å | |
| CA | CB | sing | 1.54Å | 1.53Å | |
| CG | OD1 | doub | 1.21Å | 1.19Å | |
| CG | CB | sing | 1.51Å | 1.52Å | |
| CAI | OAJ | sing | 1.35Å | 1.36Å | |
| CAI | N | sing | 1.35Å | 1.28Å | |
| CAL | OAJ | sing | 1.45Å | 1.43Å | |
| CAL | CAM | sing | 1.51Å | 1.48Å | |
| CAN | CAM | doub | 1.38Å | 1.38Å | Aromatic |
| CAN | CAO | sing | 1.38Å | 1.29Å | Aromatic |
| CAM | CAR | sing | 1.38Å | 1.36Å | Aromatic |
| CAO | CAP | doub | 1.38Å | 1.43Å | Aromatic |
| CAR | CAQ | doub | 1.38Å | 1.34Å | Aromatic |
| CAP | CAQ | sing | 1.38Å | 1.42Å | Aromatic |
| ND2 | H1 | sing | 0.97Å | 1.00Å | |
| CB | H2 | sing | 1.09Å | 1.10Å | |
| CB | H3 | sing | 1.09Å | 1.10Å | |
| CA | H4 | sing | 1.09Å | 1.10Å | |
| N | H5 | sing | 0.97Å | 1.00Å | |
| CAL | H6 | sing | 1.09Å | 1.10Å | |
| CAL | H7 | sing | 1.09Å | 1.10Å | |
| CAN | H8 | sing | 1.08Å | 1.08Å | |
| CAO | H9 | sing | 1.08Å | 1.08Å | |
| CAP | H10 | sing | 1.08Å | 1.08Å | |
| CAQ | H11 | sing | 1.08Å | 1.08Å | |
| CAR | H12 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O | C | ND2 | 123.1° | 125.4° |
| O | C | CA | 128.0° | 125.4° |
| ND2 | C | CA | 108.8° | 109.2° |
| C | ND2 | CG | 112.2° | 114.4° |
| C | ND2 | H1 | 123.9° | 122.8° |
| C | CA | N | 112.6° | 110.7° |
| C | CA | CB | 105.5° | 103.5° |
| C | CA | H4 | 107.5° | 110.6° |
| ND2 | CG | OD1 | 125.0° | 125.3° |
| ND2 | CG | CB | 109.8° | 109.2° |
| CG | ND2 | H1 | 123.9° | 122.8° |
| OAK | CAI | OAJ | 120.9° | 120.0° |
| OAK | CAI | N | 126.0° | 120.0° |
| N | CA | CB | 115.8° | 110.5° |
| CA | N | CAI | 122.6° | 120.0° |
| N | CA | H4 | 108.0° | 110.6° |
| CA | N | H5 | 118.7° | 120.0° |
| CA | CB | CG | 102.1° | 103.6° |
| CA | CB | H2 | 111.3° | 110.8° |
| CA | CB | H3 | 111.3° | 110.6° |
| CB | CA | H4 | 107.0° | 110.8° |
| OD1 | CG | CB | 125.2° | 125.4° |
| CG | CB | H2 | 111.3° | 110.6° |
| CG | CB | H3 | 111.3° | 110.6° |
| OAJ | CAI | N | 113.1° | 120.0° |
| CAI | OAJ | CAL | 122.1° | 117.0° |
| CAI | N | H5 | 118.7° | 120.0° |
| OAJ | CAL | CAM | 113.0° | 109.5° |
| OAJ | CAL | H6 | 108.6° | 109.5° |
| OAJ | CAL | H7 | 108.6° | 109.5° |
| CAL | CAM | CAN | 119.1° | 120.0° |
| CAL | CAM | CAR | 125.2° | 119.9° |
| CAM | CAL | H6 | 108.6° | 109.5° |
| CAM | CAL | H7 | 108.6° | 109.4° |
| CAM | CAN | CAO | 121.5° | 120.0° |
| CAN | CAM | CAR | 115.7° | 120.0° |
| CAM | CAN | H8 | 119.2° | 120.0° |
| CAN | CAO | CAP | 126.5° | 120.1° |
| CAO | CAN | H8 | 119.2° | 120.0° |
| CAN | CAO | H9 | 116.7° | 119.9° |
| CAM | CAR | CAQ | 122.9° | 120.0° |
| CAM | CAR | H12 | 118.5° | 120.1° |
| CAO | CAP | CAQ | 109.7° | 119.9° |
| CAP | CAO | H9 | 116.8° | 120.0° |
| CAO | CAP | H10 | 125.2° | 120.1° |
| CAR | CAQ | CAP | 123.1° | 120.0° |
| CAR | CAQ | H11 | 118.4° | 119.9° |
| CAQ | CAR | H12 | 118.6° | 120.0° |
| CAQ | CAP | H10 | 125.2° | 120.0° |
| CAP | CAQ | H11 | 118.5° | 120.0° |
| H2 | CB | H3 | 109.5° | 110.5° |
| H6 | CAL | H7 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O | C | ND2 | CA | 177.2° | 179.8° |
| O | C | ND2 | CG | 176.2° | 180.0° |
| O | C | CA | N | 43.8° | 61.5° |
| O | C | CA | CB | 171.1° | 179.9° |
| O | C | ND2 | H1 | 3.8° | 0.0° |
| O | C | CA | H4 | 75.0° | 61.4° |
| C | ND2 | CG | H1 | 180.0° | 180.0° |
| ND2 | C | CA | N | 139.1° | 118.7° |
| ND2 | C | CA | CB | 11.9° | 0.3° |
| C | ND2 | CG | OD1 | 178.2° | 180.0° |
| C | ND2 | CG | CB | 1.8° | 0.0° |
| ND2 | C | CA | H4 | 102.0° | 118.4° |
| CA | C | ND2 | CG | 6.5° | 0.2° |
| C | CA | N | CB | 121.6° | 114.1° |
| C | CA | N | H4 | 118.5° | 122.9° |
| C | CA | CB | H4 | 114.2° | 118.6° |
| C | CA | CB | CG | 12.0° | 0.3° |
| C | CA | N | CAI | 91.4° | 86.4° |
| CA | C | ND2 | H1 | 173.5° | 179.8° |
| C | CA | CB | H2 | 130.8° | 118.3° |
| C | CA | CB | H3 | 106.8° | 118.8° |
| C | CA | N | H5 | 88.6° | 93.5° |
| ND2 | CG | CB | CA | 8.8° | 0.2° |
| ND2 | CG | OD1 | CB | 180.0° | 180.0° |
| ND2 | CG | CB | H2 | 127.6° | 118.5° |
| ND2 | CG | CB | H3 | 110.0° | 118.7° |
| OAK | CAI | N | CA | 8.9° | 0.1° |
| OAK | CAI | OAJ | N | 179.7° | 180.0° |
| OAK | CAI | OAJ | CAL | 3.8° | 0.0° |
| OAK | CAI | N | H5 | 171.1° | 180.0° |
| N | CA | CB | H4 | 120.4° | 122.9° |
| N | CA | CB | CG | 137.3° | 118.8° |
| CA | N | CAI | OAJ | 171.4° | 180.0° |
| CA | N | CAI | H5 | 180.0° | 179.9° |
| N | CA | CB | H2 | 103.9° | 0.2° |
| N | CA | CB | H3 | 18.5° | 122.7° |
| CA | CB | CG | OD1 | 171.2° | 179.8° |
| CA | CB | CG | H2 | 118.8° | 118.7° |
| CA | CB | CG | H3 | 118.8° | 118.5° |
| CB | CA | N | CAI | 147.0° | 159.5° |
| CA | CB | H2 | H3 | 123.4° | 122.9° |
| CB | CA | N | H5 | 33.0° | 20.6° |
| OD1 | CG | ND2 | H1 | 1.8° | 0.0° |
| OD1 | CG | CB | H2 | 52.4° | 61.5° |
| OD1 | CG | CB | H3 | 70.0° | 61.3° |
| CB | CG | ND2 | H1 | 178.3° | 180.0° |
| CG | CB | H2 | H3 | 123.4° | 122.8° |
| CG | CB | CA | H4 | 102.3° | 118.3° |
| CAI | OAJ | CAL | CAM | 73.4° | 180.0° |
| OAJ | CAI | N | H5 | 8.6° | 0.0° |
| CAI | OAJ | CAL | H6 | 47.1° | 60.0° |
| CAI | OAJ | CAL | H7 | 166.0° | 60.0° |
| N | CAI | OAJ | CAL | 175.9° | 180.0° |
| CAI | N | CA | H4 | 27.1° | 36.4° |
| OAJ | CAL | CAM | H6 | 120.5° | 120.1° |
| OAJ | CAL | CAM | H7 | 120.5° | 120.0° |
| OAJ | CAL | CAM | CAN | 120.6° | 89.7° |
| OAJ | CAL | CAM | CAR | 59.6° | 90.0° |
| OAJ | CAL | H6 | H7 | 118.4° | 120.0° |
| CAL | CAM | CAN | CAR | 179.9° | 179.7° |
| CAL | CAM | CAN | CAO | 179.4° | 180.0° |
| CAL | CAM | CAR | CAQ | 174.2° | 179.8° |
| CAM | CAL | H6 | H7 | 118.4° | 119.9° |
| CAL | CAM | CAN | H8 | 0.6° | 0.0° |
| CAL | CAM | CAR | H12 | 5.8° | 0.0° |
| CAM | CAN | CAO | H8 | 180.0° | 180.0° |
| CAM | CAN | CAO | CAP | 4.7° | 0.0° |
| CAN | CAM | CAR | CAQ | 5.7° | 0.4° |
| CAN | CAM | CAL | H6 | 0.0° | 150.2° |
| CAN | CAM | CAL | H7 | 118.9° | 30.3° |
| CAM | CAN | CAO | H9 | 175.4° | 180.0° |
| CAN | CAM | CAR | H12 | 174.3° | 179.7° |
| CAO | CAN | CAM | CAR | 0.7° | 0.2° |
| CAN | CAO | CAP | H9 | 180.0° | 180.0° |
| CAN | CAO | CAP | CAQ | 2.1° | 0.0° |
| CAN | CAO | CAP | H10 | 177.9° | 179.9° |
| CAM | CAR | CAQ | H12 | 180.0° | 179.8° |
| CAM | CAR | CAQ | CAP | 8.5° | 0.4° |
| CAR | CAM | CAL | H6 | 179.9° | 30.1° |
| CAR | CAM | CAL | H7 | 61.0° | 150.0° |
| CAR | CAM | CAN | H8 | 179.3° | 179.7° |
| CAM | CAR | CAQ | H11 | 171.5° | 179.7° |
| CAO | CAP | CAQ | CAR | 4.3° | 0.2° |
| CAO | CAP | CAQ | H10 | 180.0° | 180.0° |
| CAP | CAO | CAN | H8 | 175.3° | 180.0° |
| CAO | CAP | CAQ | H11 | 175.7° | 179.9° |
| CAR | CAQ | CAP | H11 | 180.0° | 179.9° |
| CAR | CAQ | CAP | H10 | 175.7° | 179.9° |
| CAQ | CAP | CAO | H9 | 177.9° | 180.0° |
| CAP | CAQ | CAR | H12 | 171.5° | 179.8° |
| H2 | CB | CA | H4 | 16.6° | 123.1° |
| H3 | CB | CA | H4 | 138.9° | 0.2° |
| H4 | CA | N | H5 | 152.9° | 143.6° |
| H8 | CAN | CAO | H9 | 4.7° | 0.1° |
| H9 | CAO | CAP | H10 | 2.1° | 0.1° |
| H10 | CAP | CAQ | H11 | 4.3° | 0.0° |
| H11 | CAQ | CAR | H12 | 8.5° | 0.1° |
