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SummaryGeometryRelated PDB entries

JOG

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O09C08sing1.43Å1.34Å
C08C07sing1.52Å1.52Å
C08C10sing1.52Å1.50Å
C07C02sing1.52Å1.51Å
C07C06sing1.53Å1.49Å
O01C02sing1.43Å1.40Å
C02C03sing1.52Å1.48Å
C06C05sing1.53Å1.52Å
C10N11sing1.46Å1.38Å
C03C04sing1.53Å1.44Å
N11C05sing1.47Å1.50Å
N11C12sing1.36Å1.39Å
C05C04sing1.53Å1.45Å
C16C17doub1.38Å1.35ÅAromatic
C16C15sing1.39Å1.39ÅAromatic
N14C12sing1.35Å1.42Å
N14C15sing1.40Å1.38Å
C17C18sing1.38Å1.37ÅAromatic
C12O13doub1.22Å1.17Å
C15C20doub1.39Å1.40ÅAromatic
C18C19doub1.38Å1.37ÅAromatic
C20C19sing1.38Å1.35ÅAromatic
C10H101sing1.09Å1.10Å
C10H102sing1.11Å1.10Å
C17H171sing1.08Å1.08Å
C20H201sing1.08Å1.08Å
O01H011sing0.97Å0.95Å
C02H021sing1.10Å1.10Å
C03H032sing1.10Å1.10Å
C03H031sing1.08Å1.10Å
C04H041sing1.09Å1.10Å
C04H042sing1.09Å1.10Å
C05H051sing1.10Å1.10Å
C06H061sing1.09Å1.10Å
C06H062sing1.09Å1.10Å
C07H071sing1.10Å1.10Å
C08H081sing1.10Å1.10Å
O09H091sing0.97Å0.95Å
N14H141sing0.97Å1.00Å
C16H161sing1.08Å1.08Å
C18H181sing1.08Å1.08Å
C19H191sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O09C08C07106.6°109.2°
O09C08C10107.5°109.3°
O09C08H081112.6°107.8°
C08O09H091109.5°114.0°
C07C08C10110.4°112.5°
C08C07C02109.3°112.4°
C08C07C06105.6°110.1°
C08C07H071109.5°108.0°
C07C08H081109.7°109.0°
C08C10N11111.2°112.5°
C08C10H101109.0°110.8°
C08C10H102109.0°108.0°
C10C08H081110.0°109.0°
C02C07C06112.7°110.4°
C07C02O01109.8°109.5°
C07C02C03114.5°112.4°
C07C02H021108.9°108.8°
C02C07H071109.6°108.1°
C07C06C05110.6°108.0°
C07C06H061109.2°109.6°
C07C06H062109.2°109.8°
C06C07H071110.0°107.7°
O01C02C03103.6°109.3°
C02O01H011109.5°114.0°
O01C02H021110.6°108.0°
C02C03C04118.4°111.6°
C03C02H021109.4°108.7°
C02C03H032107.2°108.1°
C02C03H031107.2°111.0°
C06C05N11105.7°109.2°
C06C05C04105.5°108.9°
C06C05H051108.9°109.3°
C05C06H061109.2°109.7°
C05C06H062109.2°109.9°
C10N11C05117.1°121.5°
C10N11C12128.8°119.3°
N11C10H101109.0°111.1°
N11C10H102109.0°107.9°
C03C04C05114.9°110.9°
C04C03H032107.2°108.0°
C04C03H031107.2°110.9°
C03C04H041108.1°109.4°
C03C04H042108.1°109.4°
C05N11C12113.3°119.2°
N11C05C04117.4°110.4°
N11C05H051109.2°109.5°
N11C12N14112.2°120.0°
N11C12O13124.0°120.0°
C05C04H041108.1°109.3°
C05C04H042108.1°109.4°
C04C05H051109.8°109.5°
C17C16C15121.8°119.9°
C16C17C18121.6°120.1°
C16C17H171119.2°119.9°
C17C16H161119.1°120.1°
C16C15N14120.8°120.1°
C16C15C20116.1°119.9°
C15C16H161119.1°120.0°
C12N14C15123.1°120.0°
N14C12O13123.7°120.0°
C12N14H141118.5°120.0°
N14C15C20123.1°120.1°
C15N14H141118.5°120.0°
C17C18C19117.5°120.2°
C18C17H171119.2°120.0°
C17C18H181121.3°119.9°
C15C20C19121.2°119.9°
C15C20H201119.4°120.0°
C18C19C20121.9°120.1°
C19C18H181121.2°120.0°
C18C19H191119.1°120.0°
C19C20H201119.4°120.1°
C20C19H191119.1°119.9°
H101C10H102109.5°106.3°
H032C03H031109.5°107.0°
H041C04H042109.5°108.4°
H061C06H062109.5°109.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O09C08C07C10116.5°121.5°
O09C08C07H081122.1°117.6°
O09C08C10H081122.9°117.6°
O09C08C07C02177.5°170.6°
O09C08C07C0656.0°65.8°
O09C08C10N1160.6°80.4°
O09C08C10H101179.2°154.6°
O09C08C10H10259.7°38.5°
O09C08C07H07162.4°51.5°
C07C08C10H081121.2°120.9°
C08C07C02C06117.1°123.4°
C08C07C02H071120.1°119.1°
C08C07C06H071118.0°117.6°
C08C07C02O0133.6°53.4°
C08C07C02C0382.4°68.2°
C08C07C06C0564.8°63.8°
C07C08C10N1155.3°41.1°
C07C08C10H10164.9°83.9°
C07C08C10H102175.6°160.0°
C08C07C02H021154.8°171.3°
C08C07C06H06155.4°176.7°
C08C07C06H062175.0°56.1°
C07C08O09H091180.0°180.0°
C10C08C07C0261.0°67.9°
C10C08C07C0660.5°55.7°
C08C10N11H101120.3°124.8°
C08C10N11H102120.3°119.1°
C08C10N11C0553.7°39.2°
C08C10N11C12115.2°140.8°
C08C10H101H102119.2°117.1°
C10C08C07H071178.9°173.0°
C10C08O09H09161.6°56.6°
C02C07C06H071122.7°117.8°
C07C02O01C03122.7°123.5°
C07C02O01H021120.3°118.3°
C07C02C03H021122.5°120.5°
C02C07C06C0554.5°60.9°
C07C02C03C0428.6°51.0°
C07C02O01H011180.0°176.5°
C07C02C03H032149.9°169.6°
C07C02C03H03192.7°73.3°
C02C07C06H061174.7°58.6°
C02C07C06H06265.7°179.2°
C02C07C08H08160.4°53.1°
C06C07C02O01150.7°176.8°
C06C07C02C0334.7°55.1°
C07C06C05H061120.2°119.4°
C07C06C05H062120.2°119.8°
C07C06C05N1159.7°57.2°
C07C06C05C0465.3°63.5°
C06C07C02H02188.1°65.3°
C07C06C05H051176.9°177.0°
C07C06H061H062119.5°120.7°
C06C07C08H081178.1°176.6°
O01C02C03H021117.9°117.7°
O01C02C03C04148.2°172.8°
O01C02C03H03290.6°68.6°
O01C02C03H03126.9°48.5°
O01C02C07H07186.5°65.7°
C02C03C04H032121.3°118.7°
C02C03C04H031121.3°124.3°
C02C03C04C0543.0°53.5°
C03C02O01H01157.3°60.0°
C02C03H032H031115.9°119.7°
C02C03C04H04177.8°67.2°
C02C03C04H042163.8°174.2°
C03C02C07H071157.6°172.6°
C06C05N11C1054.7°47.7°
C06C05C04C0359.0°60.3°
C06C05N11C04117.3°119.8°
C06C05N11H051117.0°119.6°
C06C05N11C12115.9°132.3°
C06C05C04H051117.2°119.5°
C06C05C04H04161.8°60.4°
C06C05C04H042179.8°179.0°
C05C06H061H062119.5°120.9°
C05C06C07H071177.2°178.7°
C10N11C05C12170.6°179.9°
C10N11C05C0462.6°72.1°
C10N11C12N146.7°3.6°
C10N11C12O13176.5°176.4°
N11C10H101H102119.2°117.1°
C10N11C05H051171.7°167.3°
N11C10C08H081176.5°162.0°
C03C04C05N1158.3°59.6°
C03C04C05H041120.8°120.7°
C03C04C05H042120.8°120.8°
C04C03C02H02194.0°69.5°
C04C03H032H031116.0°119.4°
C03C04H041H042117.5°119.2°
C03C04C05H051176.2°179.7°
N11C05C04H051125.5°120.6°
C05N11C12N14175.9°176.4°
C05N11C12O137.3°3.7°
C05N11C10H10166.5°85.7°
C05N11C10H102174.0°158.2°
N11C05C04H041179.1°179.7°
N11C05C04H04262.5°61.1°
N11C05C06H06160.5°176.7°
N11C05C06H062179.9°62.6°
C12N11C05C04126.8°108.0°
N11C12N14O13176.8°180.0°
N11C12N14C15179.1°170.4°
C12N11C10H101124.6°94.4°
C12N11C10H1025.1°21.7°
C12N11C05H0511.1°12.6°
N11C12N14H1410.9°9.6°
C05C04C03H032164.2°172.1°
C05C04C03H03178.3°70.9°
C05C04H041H042117.5°119.2°
C04C05C06H061174.5°56.0°
C04C05C06H06254.8°176.8°
C17C16C15H161180.0°180.0°
C17C16C15N14179.9°179.7°
C16C17C18H171180.0°179.3°
C17C16C15C201.3°0.1°
C16C17C18C190.3°0.8°
C16C17C18H181179.6°179.3°
C16C15N14C12117.6°28.0°
C16C15N14C20178.7°179.8°
C15C16C17C180.6°0.5°
C16C15C20C191.8°0.1°
C15C16C17H171179.4°179.8°
C16C15C20H201178.2°179.7°
C16C15N14H14162.4°152.0°
C12N14C15H141180.0°180.0°
C12N14C15C2061.1°151.8°
C15N14C12O132.2°9.6°
N14C15C20C19179.4°179.9°
N14C15C20H2010.5°0.1°
N14C15C16H1610.0°0.3°
C17C18C19H181180.0°180.0°
C17C18C19C200.9°0.5°
C18C17C16H161179.4°179.5°
C17C18C19H191179.1°179.5°
O13C12N14H141177.8°170.5°
C15C20C19C181.7°0.1°
C15C20C19H201180.0°179.9°
C20C15N14H141118.9°28.2°
C20C15C16H161178.7°179.9°
C15C20C19H191178.3°180.0°
C18C19C20H191180.0°179.9°
C19C18C17H171179.7°180.0°
C18C19C20H201178.3°179.9°
C20C19C18H181179.1°179.5°
H101C10C08H08156.2°37.0°
H102C10C08H08163.2°79.1°
H171C17C16H1610.5°0.2°
H171C17C18H1810.3°0.0°
H201C20C19H1911.7°0.1°
H011O01C02H02159.7°58.1°
H021C02C03H03227.3°49.1°
H021C02C03H031144.7°166.2°
H021C02C07H07134.8°52.2°
H032C03C04H04143.5°51.5°
H032C03C04H04275.0°67.1°
H031C03C04H041160.9°168.5°
H031C03C04H04242.5°49.9°
H041C04C05H05155.4°59.1°
H042C04C05H05163.0°59.5°
H051C05C06H06156.7°63.6°
H051C05C06H06263.0°57.2°
H061C06C07H07162.7°59.2°
H062C06C07H07157.0°61.5°
H071C07C08H08159.8°66.1°
H081C08O09H09159.7°61.7°
H181C18C19H1910.9°0.5°

223532

PDB entries from 2024-08-07

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