JN2
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.44Å | |
| O4' | C4' | sing | 1.43Å | 1.44Å | |
| C3' | C4' | sing | 1.53Å | 1.54Å | |
| C3' | C2' | sing | 1.53Å | 1.54Å | |
| C4' | C5' | sing | 1.53Å | 1.56Å | |
| O2' | C2' | sing | 1.43Å | 1.44Å | |
| C2' | C1' | sing | 1.53Å | 1.54Å | |
| O6' | C6' | sing | 1.43Å | 1.43Å | |
| C5' | C6' | sing | 1.53Å | 1.53Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| C1' | O5' | sing | 1.43Å | 1.45Å | |
| C1' | N1 | sing | 1.47Å | 1.46Å | |
| N1 | C2 | sing | 1.35Å | 1.34Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C2 | C3 | sing | 1.48Å | 1.51Å | |
| C4 | C3 | doub | 1.40Å | 1.41Å | Aromatic |
| C4 | C5 | sing | 1.38Å | 1.40Å | Aromatic |
| C3 | C8 | sing | 1.39Å | 1.41Å | Aromatic |
| C5 | C6 | doub | 1.38Å | 1.39Å | Aromatic |
| C8 | C7 | doub | 1.39Å | 1.41Å | Aromatic |
| C6 | C7 | sing | 1.39Å | 1.40Å | Aromatic |
| C7 | C9 | sing | 1.48Å | 1.50Å | |
| C9 | C14 | doub | 1.39Å | 1.40Å | Aromatic |
| C9 | C10 | sing | 1.39Å | 1.40Å | Aromatic |
| C14 | C13 | sing | 1.38Å | 1.39Å | Aromatic |
| C10 | C11 | doub | 1.38Å | 1.39Å | Aromatic |
| C13 | C12 | doub | 1.38Å | 1.40Å | Aromatic |
| C11 | C12 | sing | 1.39Å | 1.39Å | Aromatic |
| C12 | F15 | sing | 1.35Å | 1.35Å | |
| C4 | H1 | sing | 1.08Å | 1.08Å | |
| C8 | H2 | sing | 1.08Å | 1.08Å | |
| C13 | H3 | sing | 1.08Å | 1.08Å | |
| C14 | H4 | sing | 1.08Å | 1.08Å | |
| C6 | H5 | sing | 1.08Å | 1.08Å | |
| C10 | H6 | sing | 1.08Å | 1.08Å | |
| C11 | H7 | sing | 1.08Å | 1.08Å | |
| C5 | H8 | sing | 1.08Å | 1.08Å | |
| O2' | H9 | sing | 0.97Å | 0.95Å | |
| C2' | H10 | sing | 1.09Å | 1.10Å | |
| C3' | H11 | sing | 1.09Å | 1.10Å | |
| O3' | H12 | sing | 0.97Å | 0.95Å | |
| C4' | H13 | sing | 1.09Å | 1.10Å | |
| O4' | H14 | sing | 0.97Å | 0.95Å | |
| C5' | H15 | sing | 1.09Å | 1.10Å | |
| C6' | H16 | sing | 1.09Å | 1.10Å | |
| C6' | H17 | sing | 1.09Å | 1.10Å | |
| O6' | H18 | sing | 0.97Å | 0.95Å | |
| C1' | H19 | sing | 1.09Å | 1.10Å | |
| N1 | H20 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 109.5° | 109.6° |
| O3' | C3' | C2' | 112.9° | 109.6° |
| O3' | C3' | H11 | 108.6° | 109.6° |
| C3' | O3' | H12 | 109.5° | 114.0° |
| O4' | C4' | C3' | 107.3° | 109.5° |
| O4' | C4' | C5' | 112.0° | 109.6° |
| O4' | C4' | H13 | 109.0° | 109.5° |
| C4' | O4' | H14 | 109.5° | 114.0° |
| C4' | C3' | C2' | 111.0° | 109.0° |
| C3' | C4' | C5' | 113.2° | 109.2° |
| C4' | C3' | H11 | 107.4° | 109.5° |
| C3' | C4' | H13 | 107.8° | 109.5° |
| C3' | C2' | O2' | 111.2° | 109.5° |
| C3' | C2' | C1' | 110.8° | 109.2° |
| C3' | C2' | H10 | 108.5° | 109.5° |
| C2' | C3' | H11 | 107.3° | 109.5° |
| C4' | C5' | C6' | 112.7° | 109.5° |
| C4' | C5' | O5' | 111.9° | 109.4° |
| C5' | C4' | H13 | 107.5° | 109.6° |
| C4' | C5' | H15 | 107.2° | 109.5° |
| O2' | C2' | C1' | 108.1° | 109.6° |
| C2' | O2' | H9 | 109.5° | 114.0° |
| O2' | C2' | H10 | 109.8° | 109.5° |
| C2' | C1' | O5' | 114.0° | 109.4° |
| C2' | C1' | N1 | 108.9° | 109.5° |
| C1' | C2' | H10 | 108.4° | 109.5° |
| C2' | C1' | H19 | 107.5° | 109.4° |
| O6' | C6' | C5' | 111.6° | 109.5° |
| O6' | C6' | H16 | 108.9° | 109.5° |
| O6' | C6' | H17 | 108.9° | 109.4° |
| C6' | O6' | H18 | 109.5° | 114.0° |
| C6' | C5' | O5' | 108.6° | 109.5° |
| C6' | C5' | H15 | 107.6° | 109.5° |
| C5' | C6' | H16 | 108.9° | 109.5° |
| C5' | C6' | H17 | 108.9° | 109.5° |
| C5' | O5' | C1' | 111.0° | 114.1° |
| O5' | C5' | H15 | 108.7° | 109.5° |
| O5' | C1' | N1 | 109.3° | 109.5° |
| O5' | C1' | H19 | 108.6° | 109.5° |
| C1' | N1 | C2 | 120.9° | 120.0° |
| N1 | C1' | H19 | 108.5° | 109.5° |
| C1' | N1 | H20 | 119.5° | 120.0° |
| N1 | C2 | O2 | 119.6° | 120.0° |
| N1 | C2 | C3 | 119.7° | 120.0° |
| C2 | N1 | H20 | 119.5° | 120.0° |
| O2 | C2 | C3 | 120.6° | 120.0° |
| C2 | C3 | C4 | 120.9° | 120.1° |
| C2 | C3 | C8 | 120.1° | 120.1° |
| C3 | C4 | C5 | 120.9° | 120.1° |
| C4 | C3 | C8 | 119.0° | 119.8° |
| C3 | C4 | H1 | 119.6° | 119.9° |
| C4 | C5 | C6 | 119.6° | 120.3° |
| C5 | C4 | H1 | 119.6° | 120.0° |
| C4 | C5 | H8 | 120.2° | 119.8° |
| C3 | C8 | C7 | 120.3° | 119.8° |
| C3 | C8 | H2 | 119.9° | 120.1° |
| C5 | C6 | C7 | 120.7° | 120.2° |
| C5 | C6 | H5 | 119.7° | 119.9° |
| C6 | C5 | H8 | 120.2° | 119.9° |
| C8 | C7 | C6 | 119.5° | 119.9° |
| C8 | C7 | C9 | 121.1° | 120.0° |
| C7 | C8 | H2 | 119.9° | 120.1° |
| C6 | C7 | C9 | 119.4° | 120.0° |
| C7 | C6 | H5 | 119.6° | 120.0° |
| C7 | C9 | C14 | 120.7° | 120.1° |
| C7 | C9 | C10 | 120.3° | 120.1° |
| C14 | C9 | C10 | 119.0° | 119.8° |
| C9 | C14 | C13 | 119.9° | 119.9° |
| C9 | C14 | H4 | 120.1° | 120.0° |
| C9 | C10 | C11 | 120.6° | 119.9° |
| C9 | C10 | H6 | 119.7° | 120.0° |
| C14 | C13 | C12 | 120.6° | 120.1° |
| C14 | C13 | H3 | 119.7° | 119.9° |
| C13 | C14 | H4 | 120.1° | 120.1° |
| C10 | C11 | C12 | 120.4° | 120.1° |
| C11 | C10 | H6 | 119.7° | 120.1° |
| C10 | C11 | H7 | 119.8° | 119.9° |
| C13 | C12 | C11 | 119.5° | 120.2° |
| C13 | C12 | F15 | 120.4° | 119.9° |
| C12 | C13 | H3 | 119.7° | 120.0° |
| C11 | C12 | F15 | 120.2° | 119.9° |
| C12 | C11 | H7 | 119.9° | 120.0° |
| H16 | C6' | H17 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C4' | O4' | 63.7° | 63.2° |
| O3' | C3' | C4' | C2' | 125.3° | 119.9° |
| O3' | C3' | C4' | H11 | 117.7° | 120.3° |
| O3' | C3' | C2' | H11 | 119.6° | 120.3° |
| O3' | C3' | C4' | C5' | 172.3° | 176.9° |
| O3' | C3' | C2' | O2' | 69.6° | 63.2° |
| O3' | C3' | C2' | C1' | 170.2° | 176.8° |
| O3' | C3' | C2' | H10 | 51.3° | 57.0° |
| O3' | C3' | C4' | H13 | 53.5° | 56.9° |
| O4' | C4' | C3' | C5' | 124.0° | 119.9° |
| O4' | C4' | C3' | H13 | 117.3° | 120.1° |
| O4' | C4' | C3' | C2' | 171.0° | 176.9° |
| O4' | C4' | C5' | H13 | 119.7° | 120.2° |
| O4' | C4' | C5' | C6' | 63.2° | 62.5° |
| O4' | C4' | C5' | O5' | 174.0° | 177.5° |
| O4' | C4' | C3' | H11 | 54.0° | 57.1° |
| O4' | C4' | C5' | H15 | 54.9° | 57.5° |
| C4' | C3' | C2' | H11 | 117.0° | 119.8° |
| C3' | C4' | C5' | H13 | 118.9° | 119.9° |
| C4' | C3' | C2' | O2' | 167.1° | 176.9° |
| C4' | C3' | C2' | C1' | 46.9° | 56.9° |
| C3' | C4' | C5' | C6' | 175.4° | 177.6° |
| C3' | C4' | C5' | O5' | 52.7° | 57.6° |
| C4' | C3' | C2' | H10 | 72.0° | 62.9° |
| C4' | C3' | O3' | H12 | 180.0° | 180.0° |
| C3' | C4' | O4' | H14 | 180.0° | 60.0° |
| C3' | C4' | C5' | H15 | 66.4° | 62.4° |
| C2' | C3' | C4' | C5' | 47.0° | 56.9° |
| C3' | C2' | O2' | C1' | 121.8° | 119.7° |
| C3' | C2' | O2' | H10 | 120.1° | 120.2° |
| C3' | C2' | C1' | H10 | 118.9° | 119.9° |
| C3' | C2' | C1' | O5' | 54.4° | 57.6° |
| C3' | C2' | C1' | N1 | 176.7° | 177.6° |
| C3' | C2' | O2' | H9 | 180.0° | 179.7° |
| C2' | C3' | O3' | H12 | 55.8° | 60.4° |
| C2' | C3' | C4' | H13 | 71.8° | 63.0° |
| C3' | C2' | C1' | H19 | 66.0° | 62.4° |
| C4' | C5' | C6' | O6' | 52.6° | 175.0° |
| C4' | C5' | C6' | O5' | 124.5° | 120.0° |
| C4' | C5' | C6' | H15 | 117.9° | 120.0° |
| C4' | C5' | O5' | H15 | 118.2° | 120.0° |
| C4' | C5' | O5' | C1' | 57.6° | 61.2° |
| C5' | C4' | C3' | H11 | 70.0° | 62.9° |
| C5' | C4' | O4' | H14 | 55.3° | 179.6° |
| C4' | C5' | C6' | H16 | 67.7° | 55.0° |
| C4' | C5' | C6' | H17 | 172.9° | 65.0° |
| O2' | C2' | C1' | H10 | 119.0° | 120.2° |
| O2' | C2' | C1' | O5' | 176.5° | 177.5° |
| O2' | C2' | C1' | N1 | 61.2° | 62.5° |
| O2' | C2' | C3' | H11 | 50.1° | 57.1° |
| O2' | C2' | C1' | H19 | 56.1° | 57.5° |
| C2' | C1' | O5' | C5' | 60.0° | 61.1° |
| C2' | C1' | O5' | N1 | 122.1° | 120.0° |
| C2' | C1' | O5' | H19 | 119.7° | 120.0° |
| C2' | C1' | N1 | H19 | 116.7° | 120.0° |
| C2' | C1' | N1 | C2 | 145.9° | 145.0° |
| C1' | C2' | O2' | H9 | 58.2° | 60.0° |
| C1' | C2' | C3' | H11 | 70.2° | 62.9° |
| C2' | C1' | N1 | H20 | 34.1° | 35.0° |
| O6' | C6' | C5' | H16 | 120.3° | 120.1° |
| O6' | C6' | C5' | H17 | 120.3° | 120.0° |
| O6' | C6' | C5' | O5' | 71.9° | 65.0° |
| O6' | C6' | C5' | H15 | 170.5° | 55.0° |
| O6' | C6' | H16 | H17 | 119.0° | 119.9° |
| C6' | C5' | O5' | H15 | 116.8° | 120.0° |
| C6' | C5' | O5' | C1' | 177.4° | 178.8° |
| C6' | C5' | C4' | H13 | 56.5° | 57.7° |
| C5' | C6' | H16 | H17 | 119.0° | 120.0° |
| C5' | C6' | O6' | H18 | 180.0° | 180.0° |
| C5' | O5' | C1' | N1 | 177.9° | 178.9° |
| O5' | C5' | C4' | H13 | 66.2° | 62.3° |
| O5' | C5' | C6' | H16 | 167.7° | 175.0° |
| O5' | C5' | C6' | H17 | 48.3° | 55.0° |
| C5' | O5' | C1' | H19 | 59.7° | 58.8° |
| O5' | C1' | N1 | H19 | 118.2° | 120.1° |
| O5' | C1' | N1 | C2 | 89.0° | 95.1° |
| O5' | C1' | C2' | H10 | 64.5° | 62.3° |
| C1' | O5' | C5' | H15 | 60.6° | 58.8° |
| O5' | C1' | N1 | H20 | 91.0° | 85.0° |
| C1' | N1 | C2 | H20 | 180.0° | 180.0° |
| C1' | N1 | C2 | O2 | 5.6° | 0.0° |
| C1' | N1 | C2 | C3 | 170.4° | 179.7° |
| N1 | C1' | C2' | H10 | 57.8° | 57.7° |
| N1 | C2 | O2 | C3 | 175.9° | 179.8° |
| N1 | C2 | C3 | C4 | 11.6° | 0.2° |
| N1 | C2 | C3 | C8 | 169.6° | 179.7° |
| C2 | N1 | C1' | H19 | 29.2° | 25.0° |
| O2 | C2 | C3 | C4 | 164.3° | 180.0° |
| O2 | C2 | C3 | C8 | 14.5° | 0.1° |
| O2 | C2 | N1 | H20 | 174.4° | 179.9° |
| C2 | C3 | C4 | C8 | 178.8° | 179.9° |
| C2 | C3 | C4 | C5 | 178.5° | 180.0° |
| C2 | C3 | C8 | C7 | 179.2° | 180.0° |
| C2 | C3 | C4 | H1 | 1.5° | 0.3° |
| C2 | C3 | C8 | H2 | 0.8° | 0.1° |
| C3 | C2 | N1 | H20 | 9.6° | 0.3° |
| C3 | C4 | C5 | H1 | 180.0° | 179.7° |
| C3 | C4 | C5 | C6 | 0.5° | 0.0° |
| C4 | C3 | C8 | C7 | 0.4° | 0.0° |
| C4 | C3 | C8 | H2 | 179.6° | 180.0° |
| C3 | C4 | C5 | H8 | 179.5° | 180.0° |
| C5 | C4 | C3 | C8 | 0.2° | 0.0° |
| C4 | C5 | C6 | H8 | 180.0° | 179.9° |
| C4 | C5 | C6 | C7 | 0.0° | 0.1° |
| C4 | C5 | C6 | H5 | 180.0° | 179.9° |
| C3 | C8 | C7 | H2 | 180.0° | 179.9° |
| C3 | C8 | C7 | C6 | 0.8° | 0.0° |
| C3 | C8 | C7 | C9 | 178.9° | 180.0° |
| C8 | C3 | C4 | H1 | 179.8° | 179.7° |
| C5 | C6 | C7 | C8 | 0.6° | 0.0° |
| C5 | C6 | C7 | H5 | 180.0° | 180.0° |
| C5 | C6 | C7 | C9 | 178.7° | 180.0° |
| C6 | C5 | C4 | H1 | 179.5° | 179.7° |
| C8 | C7 | C6 | C9 | 178.1° | 180.0° |
| C8 | C7 | C9 | C14 | 152.4° | 180.0° |
| C8 | C7 | C9 | C10 | 29.3° | 0.3° |
| C8 | C7 | C6 | H5 | 179.4° | 180.0° |
| C6 | C7 | C9 | C14 | 29.5° | 0.0° |
| C6 | C7 | C9 | C10 | 148.8° | 179.8° |
| C6 | C7 | C8 | H2 | 179.2° | 180.0° |
| C7 | C6 | C5 | H8 | 179.9° | 180.0° |
| C7 | C9 | C14 | C10 | 178.4° | 179.7° |
| C7 | C9 | C14 | C13 | 179.1° | 179.7° |
| C7 | C9 | C10 | C11 | 179.3° | 179.7° |
| C9 | C7 | C8 | H2 | 1.1° | 0.0° |
| C7 | C9 | C14 | H4 | 0.8° | 0.3° |
| C9 | C7 | C6 | H5 | 1.3° | 0.0° |
| C7 | C9 | C10 | H6 | 0.6° | 0.3° |
| C9 | C14 | C13 | H4 | 180.0° | 180.0° |
| C14 | C9 | C10 | C11 | 1.0° | 0.0° |
| C9 | C14 | C13 | C12 | 0.3° | 0.0° |
| C9 | C14 | C13 | H3 | 179.8° | 180.0° |
| C14 | C9 | C10 | H6 | 179.0° | 180.0° |
| C10 | C9 | C14 | C13 | 0.8° | 0.0° |
| C9 | C10 | C11 | H6 | 180.0° | 180.0° |
| C9 | C10 | C11 | C12 | 0.6° | 0.0° |
| C10 | C9 | C14 | H4 | 179.2° | 180.0° |
| C9 | C10 | C11 | H7 | 179.4° | 179.9° |
| C14 | C13 | C12 | H3 | 180.0° | 180.0° |
| C14 | C13 | C12 | C11 | 0.1° | 0.0° |
| C14 | C13 | C12 | F15 | 179.6° | 180.0° |
| C10 | C11 | C12 | C13 | 0.1° | 0.0° |
| C10 | C11 | C12 | H7 | 180.0° | 179.9° |
| C10 | C11 | C12 | F15 | 179.8° | 180.0° |
| C13 | C12 | C11 | F15 | 179.7° | 179.9° |
| C12 | C13 | C14 | H4 | 179.7° | 180.0° |
| C13 | C12 | C11 | H7 | 179.9° | 179.9° |
| C11 | C12 | C13 | H3 | 179.9° | 180.0° |
| C12 | C11 | C10 | H6 | 179.4° | 180.0° |
| F15 | C12 | C13 | H3 | 0.4° | 0.1° |
| F15 | C12 | C11 | H7 | 0.2° | 0.1° |
| H1 | C4 | C5 | H8 | 0.5° | 0.4° |
| H3 | C13 | C14 | H4 | 0.3° | 0.1° |
| H5 | C6 | C5 | H8 | 0.1° | 0.0° |
| H6 | C10 | C11 | H7 | 0.6° | 0.1° |
| H9 | O2' | C2' | H10 | 59.9° | 60.1° |
| H10 | C2' | C3' | H11 | 170.9° | 177.2° |
| H10 | C2' | C1' | H19 | 175.1° | 177.7° |
| H11 | C3' | O3' | H12 | 63.1° | 59.8° |
| H11 | C3' | C4' | H13 | 171.2° | 177.2° |
| H13 | C4' | O4' | H14 | 63.6° | 60.1° |
| H13 | C4' | C5' | H15 | 174.7° | 177.7° |
| H15 | C5' | C6' | H16 | 50.2° | 65.0° |
| H15 | C5' | C6' | H17 | 69.2° | 175.0° |
| H16 | C6' | O6' | H18 | 59.7° | 60.0° |
| H17 | C6' | O6' | H18 | 59.7° | 60.0° |
| H19 | C1' | N1 | H20 | 150.8° | 155.0° |
