JLN
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | sing | 1.61Å | 1.47Å | |
| P | O2P | sing | 1.61Å | 1.45Å | |
| P | O5' | sing | 1.61Å | 1.59Å | |
| P | O3P | doub | 1.48Å | 1.47Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| C4' | O4' | sing | 1.44Å | 1.49Å | |
| C4' | C3' | sing | 1.54Å | 1.57Å | |
| O4' | C1' | sing | 1.44Å | 1.52Å | |
| C1' | N1 | sing | 1.46Å | 1.47Å | |
| C1' | C2' | sing | 1.55Å | 1.51Å | |
| N1 | C5 | sing | 1.36Å | 1.35Å | Aromatic |
| N1 | C2 | sing | 1.36Å | 1.44Å | Aromatic |
| C5 | N5 | sing | 1.38Å | 1.37Å | |
| C5 | C4 | doub | 1.39Å | 1.43Å | Aromatic |
| N5 | C7 | sing | 1.35Å | 1.28Å | |
| C7 | O7 | doub | 1.21Å | 1.18Å | |
| C6 | O6B | sing | 1.35Å | 1.33Å | |
| C6 | C4 | sing | 1.46Å | 1.57Å | |
| C6 | O6A | doub | 1.22Å | 1.30Å | |
| C4 | N3 | sing | 1.36Å | 1.35Å | Aromatic |
| N3 | C2 | doub | 1.30Å | 1.25Å | Aromatic |
| C2' | O2' | sing | 1.43Å | 1.27Å | |
| C2' | C3' | sing | 1.55Å | 1.60Å | |
| O1P | H1P | sing | 0.97Å | 0.95Å | |
| O2P | H2P | sing | 0.97Å | 0.95Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| N5 | H5 | sing | 0.97Å | 1.00Å | |
| C7 | H7 | sing | 1.08Å | 1.08Å | |
| O6B | H6B | sing | 0.97Å | 0.95Å | |
| O2' | HA | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.35Å | |
| H3O | O3' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 111.3° | 109.5° |
| O1P | P | O5' | 103.4° | 109.4° |
| O1P | P | O3P | 114.0° | 109.5° |
| P | O1P | H1P | 109.5° | 114.0° |
| O2P | P | O5' | 102.8° | 109.5° |
| O2P | P | O3P | 116.8° | 109.5° |
| P | O2P | H2P | 109.5° | 114.0° |
| O5' | P | O3P | 106.9° | 109.5° |
| P | O5' | C5' | 129.9° | 123.0° |
| O5' | C5' | C4' | 110.9° | 109.5° |
| O5' | C5' | H5'1 | 109.1° | 109.5° |
| O5' | C5' | H5'2 | 109.1° | 109.4° |
| C5' | C4' | O4' | 107.7° | 109.9° |
| C5' | C4' | C3' | 97.6° | 109.9° |
| C4' | C5' | H5'1 | 109.1° | 109.5° |
| C4' | C5' | H5'2 | 109.1° | 109.5° |
| C5' | C4' | H4' | 114.9° | 109.9° |
| O4' | C4' | C3' | 106.1° | 107.3° |
| C4' | O4' | C1' | 106.8° | 107.0° |
| O4' | C4' | H4' | 115.1° | 109.9° |
| C4' | C3' | C2' | 104.5° | 104.2° |
| C3' | C4' | H4' | 113.8° | 110.0° |
| C4' | C3' | H3' | 110.7° | 110.5° |
| C4' | C3' | O3' | 100.7° | 110.5° |
| O4' | C1' | N1 | 105.8° | 110.6° |
| O4' | C1' | C2' | 104.4° | 103.5° |
| O4' | C1' | H1' | 108.5° | 110.6° |
| N1 | C1' | C2' | 119.6° | 110.6° |
| C1' | N1 | C5 | 128.5° | 126.2° |
| C1' | N1 | C2 | 122.4° | 126.2° |
| N1 | C1' | H1' | 109.3° | 110.5° |
| C1' | C2' | O2' | 105.4° | 110.9° |
| C1' | C2' | C3' | 100.5° | 102.1° |
| C2' | C1' | H1' | 108.7° | 110.7° |
| C1' | C2' | H2' | 113.3° | 110.9° |
| C5 | N1 | C2 | 109.1° | 107.6° |
| N1 | C5 | N5 | 121.5° | 126.8° |
| N1 | C5 | C4 | 103.1° | 106.4° |
| N1 | C2 | N3 | 107.7° | 109.6° |
| N1 | C2 | H2 | 126.2° | 125.2° |
| N5 | C5 | C4 | 135.4° | 126.8° |
| C5 | N5 | C7 | 122.7° | 120.0° |
| C5 | N5 | H5 | 118.7° | 119.9° |
| C5 | C4 | C6 | 132.6° | 126.3° |
| C5 | C4 | N3 | 108.8° | 107.3° |
| N5 | C7 | O7 | 116.9° | 120.0° |
| C7 | N5 | H5 | 118.7° | 120.0° |
| N5 | C7 | H7 | 121.5° | 120.0° |
| O7 | C7 | H7 | 121.6° | 120.0° |
| O6B | C6 | C4 | 117.1° | 120.0° |
| O6B | C6 | O6A | 124.7° | 120.0° |
| C6 | O6B | H6B | 109.5° | 117.0° |
| C4 | C6 | O6A | 118.2° | 120.1° |
| C6 | C4 | N3 | 118.7° | 126.4° |
| C4 | N3 | C2 | 111.3° | 109.1° |
| N3 | C2 | H2 | 126.1° | 125.2° |
| O2' | C2' | C3' | 106.1° | 110.9° |
| O2' | C2' | H2' | 118.0° | 110.8° |
| C2' | O2' | HA | 109.5° | 114.1° |
| C2' | C3' | H3' | 110.3° | 110.5° |
| C3' | C2' | H2' | 111.9° | 110.9° |
| C2' | C3' | O3' | 115.5° | 110.5° |
| H5'1 | C5' | H5'2 | 109.5° | 109.5° |
| H3' | C3' | O3' | 114.3° | 110.5° |
| C3' | O3' | H3O | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O5' | 110.1° | 120.0° |
| O1P | P | O2P | O3P | 133.2° | 120.0° |
| O1P | P | O5' | O3P | 120.6° | 120.0° |
| O1P | P | O5' | C5' | 160.7° | 175.0° |
| O1P | P | O2P | H2P | 133.2° | 60.0° |
| O2P | P | O5' | O3P | 123.5° | 120.0° |
| O2P | P | O5' | C5' | 83.3° | 65.0° |
| O2P | P | O1P | H1P | 134.6° | 60.0° |
| P | O5' | C5' | C4' | 132.2° | 180.0° |
| O5' | P | O1P | H1P | 115.6° | 180.0° |
| O5' | P | O2P | H2P | 116.6° | 60.0° |
| P | O5' | C5' | H5'1 | 107.6° | 60.0° |
| P | O5' | C5' | H5'2 | 12.0° | 59.9° |
| O3P | P | O5' | C5' | 40.1° | 55.0° |
| O3P | P | O1P | H1P | 0.0° | 60.0° |
| O3P | P | O2P | H2P | 0.0° | 180.0° |
| O5' | C5' | C4' | H5'1 | 120.2° | 120.0° |
| O5' | C5' | C4' | H5'2 | 120.2° | 120.0° |
| O5' | C5' | C4' | O4' | 54.2° | 66.4° |
| O5' | C5' | C4' | C3' | 163.8° | 175.7° |
| O5' | C5' | H5'1 | H5'2 | 119.4° | 119.9° |
| O5' | C5' | C4' | H4' | 75.5° | 54.6° |
| C5' | C4' | O4' | C3' | 103.6° | 119.5° |
| C5' | C4' | O4' | H4' | 129.5° | 121.0° |
| C5' | C4' | C3' | H4' | 121.5° | 121.1° |
| C5' | C4' | O4' | C1' | 118.6° | 145.9° |
| C5' | C4' | C3' | C2' | 100.1° | 121.4° |
| C4' | C5' | H5'1 | H5'2 | 119.3° | 120.1° |
| C5' | C4' | C3' | H3' | 18.7° | 2.7° |
| C5' | C4' | C3' | O3' | 139.9° | 119.8° |
| O4' | C4' | C3' | H4' | 127.6° | 119.4° |
| C4' | O4' | C1' | N1 | 164.1° | 158.5° |
| C4' | O4' | C1' | C2' | 37.0° | 40.0° |
| O4' | C4' | C3' | C2' | 10.9° | 2.0° |
| O4' | C4' | C5' | H5'1 | 66.1° | 53.5° |
| O4' | C4' | C5' | H5'2 | 174.4° | 173.6° |
| O4' | C4' | C3' | H3' | 129.6° | 116.7° |
| C4' | O4' | C1' | H1' | 78.8° | 78.6° |
| O4' | C4' | C3' | O3' | 109.2° | 120.7° |
| C3' | C4' | O4' | C1' | 15.0° | 26.4° |
| C4' | C3' | C2' | C1' | 32.3° | 20.9° |
| C4' | C3' | C2' | O2' | 141.8° | 139.1° |
| C4' | C3' | C2' | H3' | 119.0° | 118.7° |
| C4' | C3' | C2' | O3' | 109.6° | 118.7° |
| C3' | C4' | C5' | H5'1 | 43.6° | 64.3° |
| C3' | C4' | C5' | H5'2 | 76.0° | 55.7° |
| C4' | C3' | H3' | O3' | 112.8° | 122.6° |
| C4' | C3' | C2' | H2' | 88.2° | 97.3° |
| C4' | C3' | O3' | H3O | 180.0° | 180.0° |
| O4' | C1' | N1 | C2' | 117.3° | 114.1° |
| O4' | C1' | N1 | H1' | 116.6° | 122.9° |
| O4' | C1' | C2' | H1' | 115.6° | 118.6° |
| O4' | C1' | N1 | C5 | 102.7° | 153.7° |
| O4' | C1' | N1 | C2 | 78.0° | 26.0° |
| O4' | C1' | C2' | O2' | 151.8° | 155.2° |
| O4' | C1' | C2' | C3' | 41.7° | 37.0° |
| C1' | O4' | C4' | H4' | 111.8° | 93.1° |
| O4' | C1' | C2' | H2' | 77.8° | 81.2° |
| N1 | C1' | C2' | H1' | 126.3° | 122.9° |
| C1' | N1 | C5 | C2 | 179.4° | 179.7° |
| C1' | N1 | C5 | N5 | 0.8° | 0.1° |
| C1' | N1 | C5 | C4 | 179.6° | 180.0° |
| C1' | N1 | C2 | N3 | 179.2° | 179.8° |
| N1 | C1' | C2' | O2' | 90.1° | 86.3° |
| N1 | C1' | C2' | C3' | 159.7° | 155.5° |
| N1 | C1' | C2' | H2' | 40.2° | 37.3° |
| C1' | N1 | C2 | H2 | 0.8° | 0.1° |
| C2' | C1' | N1 | C5 | 140.0° | 92.2° |
| C2' | C1' | N1 | C2 | 39.3° | 88.1° |
| C1' | C2' | O2' | C3' | 106.1° | 112.7° |
| C1' | C2' | O2' | H2' | 127.6° | 123.6° |
| C1' | C2' | C3' | H2' | 120.5° | 118.2° |
| C1' | C2' | C3' | H3' | 151.3° | 139.6° |
| C1' | C2' | O2' | HA | 180.0° | 180.0° |
| C1' | C2' | C3' | O3' | 77.3° | 97.8° |
| N1 | C5 | N5 | C4 | 178.3° | 179.9° |
| N1 | C5 | N5 | C7 | 150.8° | 61.3° |
| N1 | C5 | C4 | C6 | 179.8° | 180.0° |
| N1 | C5 | C4 | N3 | 0.4° | 0.0° |
| C5 | N1 | C2 | N3 | 1.3° | 0.5° |
| C5 | N1 | C1' | H1' | 14.0° | 30.8° |
| C5 | N1 | C2 | H2 | 178.7° | 179.8° |
| N1 | C5 | N5 | H5 | 29.2° | 118.7° |
| C2 | N1 | C5 | N5 | 179.8° | 179.6° |
| C2 | N1 | C5 | C4 | 1.0° | 0.3° |
| N1 | C2 | N3 | C4 | 1.0° | 0.5° |
| N1 | C2 | N3 | H2 | 180.0° | 179.7° |
| C2 | N1 | C1' | H1' | 165.4° | 148.8° |
| C5 | N5 | C7 | H5 | 180.0° | 180.0° |
| C5 | N5 | C7 | O7 | 137.5° | 5.0° |
| N5 | C5 | C4 | C6 | 1.3° | 0.1° |
| N5 | C5 | C4 | N3 | 179.0° | 179.9° |
| C5 | N5 | C7 | H7 | 42.5° | 175.1° |
| C4 | C5 | N5 | C7 | 27.6° | 118.6° |
| C5 | C4 | C6 | O6B | 178.3° | 180.0° |
| C5 | C4 | C6 | N3 | 179.7° | 180.0° |
| C5 | C4 | C6 | O6A | 2.4° | 0.0° |
| C5 | C4 | N3 | C2 | 0.4° | 0.3° |
| C4 | C5 | N5 | H5 | 152.4° | 61.4° |
| N5 | C7 | O7 | H7 | 180.0° | 179.9° |
| O7 | C7 | N5 | H5 | 42.4° | 175.0° |
| O6B | C6 | C4 | O6A | 179.3° | 179.9° |
| O6B | C6 | C4 | N3 | 2.0° | 0.0° |
| C6 | C4 | N3 | C2 | 179.4° | 179.7° |
| C4 | C6 | O6B | H6B | 179.3° | 180.0° |
| O6A | C6 | C4 | N3 | 177.4° | 180.0° |
| O6A | C6 | O6B | H6B | 0.0° | 0.1° |
| C4 | N3 | C2 | H2 | 179.0° | 179.8° |
| O2' | C2' | C3' | H2' | 129.9° | 123.6° |
| O2' | C2' | C3' | H3' | 99.1° | 102.2° |
| O2' | C2' | C1' | H1' | 36.2° | 36.6° |
| O2' | C2' | C3' | O3' | 32.3° | 20.4° |
| C2' | C3' | C4' | H4' | 138.5° | 117.5° |
| C2' | C3' | H3' | O3' | 132.0° | 122.6° |
| C3' | C2' | C1' | H1' | 73.9° | 81.6° |
| C3' | C2' | O2' | HA | 73.9° | 67.3° |
| C2' | C3' | O3' | H3O | 68.2° | 65.2° |
| H5'1 | C5' | C4' | H4' | 164.2° | 174.6° |
| H5'2 | C5' | C4' | H4' | 44.7° | 65.4° |
| H4' | C4' | C3' | H3' | 102.8° | 123.8° |
| H4' | C4' | C3' | O3' | 18.4° | 1.2° |
| H3' | C3' | C2' | H2' | 30.8° | 21.4° |
| H3' | C3' | O3' | H3O | 61.3° | 57.4° |
| H1' | C1' | C2' | H2' | 166.6° | 160.2° |
| H2' | C2' | O2' | HA | 52.4° | 56.4° |
| H2' | C2' | C3' | O3' | 162.2° | 144.0° |
| H5 | N5 | C7 | H7 | 137.6° | 4.9° |
