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JK5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N01C02doub1.32Å1.36ÅAromatic
N01C06sing1.32Å1.37ÅAromatic
C02N02sing1.39Å1.37Å
C02C03sing1.39Å1.42ÅAromatic
C03C04doub1.38Å1.41ÅAromatic
C04C05sing1.39Å1.39ÅAromatic
C04C07sing1.51Å1.53Å
C05C06doub1.38Å1.41ÅAromatic
C06C08sing1.51Å1.51Å
C08C4'sing1.53Å1.54Å
O09C10sing1.43Å1.43Å
O09C3'sing1.43Å1.44Å
N1'C2'sing1.49Å1.46Å
N1'C5'sing1.49Å1.46Å
C10C11sing1.53Å1.51Å
C11N12sing1.47Å1.45Å
N12C13sing1.47Å1.46Å
C13C14sing1.53Å1.53Å
C14F15sing1.40Å1.33Å
C14F16sing1.40Å1.33Å
C14C21sing1.51Å1.52Å
C2'C3'sing1.54Å1.54Å
C21C22doub1.38Å1.39ÅAromatic
C21C26sing1.38Å1.40ÅAromatic
C22C23sing1.39Å1.39ÅAromatic
C23F23sing1.35Å1.32Å
C23C24doub1.38Å1.36ÅAromatic
C24C25sing1.38Å1.37ÅAromatic
C25CL25sing1.74Å1.75Å
C25C26doub1.38Å1.38ÅAromatic
C3'C4'sing1.54Å1.53Å
C4'C5'sing1.54Å1.53Å
N02HN02sing0.97Å1.00Å
N02HN0Asing0.97Å1.00Å
C03H03sing1.08Å1.08Å
C05H05sing1.08Å1.08Å
C07H07sing1.09Å1.10Å
C07H07Asing1.09Å1.10Å
C07H07Bsing1.09Å1.10Å
C08H08sing1.09Å1.10Å
C08H08Asing1.09Å1.10Å
N1'HN1'sing1.01Å1.00Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
N12HN12sing1.01Å1.00Å
C13H13sing1.09Å1.10Å
C13H13Asing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
C22H22sing1.08Å1.08Å
C24H24sing1.08Å1.08Å
C26H26sing1.08Å1.08Å
C3'H3'sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C02N01C06122.0°121.7°
N01C02N02119.7°119.7°
N01C02C03118.1°120.6°
N01C06C05121.2°120.8°
N01C06C08118.7°119.6°
N02C02C03122.1°119.7°
C02N02HN02109.5°120.1°
C02N02HN0A109.4°120.0°
C02C03C04120.7°119.1°
C02C03H03119.7°120.5°
C03C04C05119.7°118.6°
C03C04C07121.0°120.7°
C04C03H03119.7°120.5°
C05C04C07119.4°120.7°
C04C05C06118.4°119.3°
C04C05H05120.8°120.4°
C04C07H07109.5°109.4°
C04C07H07A109.5°109.5°
C04C07H07B109.5°109.5°
C05C06C08120.1°119.6°
C06C05H05120.8°120.3°
C06C08C4'112.6°109.4°
C06C08H08108.4°109.5°
C06C08H08A108.4°109.4°
C08C4'C3'111.6°110.3°
C08C4'C5'113.2°110.3°
C4'C08H08108.4°109.5°
C4'C08H08A108.5°109.5°
C08C4'H4'103.9°110.3°
C10O09C3'115.4°114.0°
O09C10C11106.3°109.5°
O09C10H10110.5°109.5°
O09C10H10A110.5°109.5°
O09C3'C2'113.0°110.3°
O09C3'C4'106.1°110.3°
O09C3'H3'108.0°110.3°
C2'N1'C5'113.1°104.2°
N1'C2'C3'103.3°104.6°
C2'N1'HN1'108.3°111.0°
N1'C2'H2'111.6°110.4°
N1'C2'H2'A111.6°110.4°
N1'C5'C4'104.8°104.6°
C5'N1'HN1'108.3°111.0°
N1'C5'H5'111.0°110.4°
N1'C5'H5'A111.0°110.4°
C10C11N12110.3°109.5°
C11C10H10110.5°109.5°
C11C10H10A110.5°109.5°
C10C11H11109.2°109.5°
C10C11H11A109.2°109.4°
C11N12C13121.4°111.0°
N12C11H11109.2°109.5°
N12C11H11A109.2°109.5°
C11N12HN12105.7°111.0°
N12C13C14114.5°109.4°
C13N12HN12105.7°111.1°
N12C13H13107.8°109.4°
N12C13H13A107.8°109.5°
C13C14F15112.7°109.5°
C13C14F16112.0°109.5°
C13C14C21107.0°109.5°
C14C13H13107.8°109.4°
C14C13H13A107.8°109.5°
F15C14F16103.3°109.4°
F15C14C21109.5°109.4°
F16C14C21112.5°109.5°
C14C21C22122.7°120.0°
C14C21C26119.5°119.9°
C2'C3'C4'104.9°105.1°
C3'C2'H2'111.6°110.4°
C3'C2'H2'A111.6°110.4°
C2'C3'H3'109.2°110.4°
C22C21C26117.8°120.1°
C21C22C23120.7°120.0°
C21C22H22119.6°120.0°
C21C26C25118.9°120.0°
C21C26H26120.6°120.1°
C22C23F23121.3°120.0°
C22C23C24121.4°119.9°
C23C22H22119.6°120.0°
F23C23C24117.3°120.0°
C23C24C25117.5°120.0°
C23C24H24121.3°120.0°
C24C25CL25117.2°120.0°
C24C25C26123.6°120.0°
C25C24H24121.3°120.0°
CL25C25C26119.1°120.0°
C25C26H26120.5°119.9°
C3'C4'C5'104.1°105.1°
C4'C3'H3'115.7°110.4°
C3'C4'H4'113.0°110.3°
C5'C4'H4'111.4°110.5°
C4'C5'H5'111.1°110.4°
C4'C5'H5'A111.1°110.5°
HN02N02HN0A109.5°120.0°
H07C07H07A109.4°109.5°
H07C07H07B109.5°109.4°
H07AC07H07B109.5°109.5°
H08C08H08A110.5°109.5°
H10C10H10A108.4°109.5°
H11C11H11A109.8°109.5°
H13C13H13A111.1°109.5°
H2'C2'H2'A107.3°110.5°
H5'C5'H5'A107.9°110.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N01C02N02C03179.7°179.9°
N01C02C03C040.4°0.0°
C02N01C06C051.0°0.1°
C02N01C06C08180.0°180.0°
N01C02N02HN020.0°0.1°
N01C02N02HN0A120.0°179.9°
N01C02C03H03179.5°179.9°
C06N01C02N02179.5°180.0°
C06N01C02C030.2°0.1°
N01C06C05C041.0°0.0°
N01C06C05C08179.0°180.0°
N01C06C08C4'102.5°55.1°
N01C06C05H05179.0°179.9°
N01C06C08H08137.5°65.0°
N01C06C08H08A17.5°175.0°
N02C02C03C04179.8°180.0°
C02N02HN02HN0A120.0°180.0°
N02C02C03H030.2°0.0°
C02C03C04H03180.0°179.9°
C02C03C04C050.4°0.0°
C02C03C04C07179.5°180.0°
C03C02N02HN02179.8°180.0°
C03C02N02HN0A60.2°0.0°
C03C04C05C07179.8°180.0°
C03C04C05C060.3°0.0°
C03C04C05H05179.7°180.0°
C03C04C07H0790.0°90.0°
C03C04C07H07A150.1°150.0°
C03C04C07H07B30.1°30.0°
C04C05C06H05180.0°180.0°
C04C05C06C08180.0°180.0°
C05C04C03H03179.6°180.0°
C05C04C07H0789.9°90.0°
C05C04C07H07A30.1°30.0°
C05C04C07H07B150.1°150.0°
C07C04C05C06179.8°180.0°
C07C04C03H030.6°0.1°
C07C04C05H050.2°0.0°
C04C07H07H07A120.0°120.0°
C04C07H07H07B120.0°120.0°
C04C07H07AH07B120.0°120.0°
C05C06C08C4'78.4°125.0°
C05C06C08H0841.6°115.0°
C05C06C08H08A161.5°5.0°
C06C08C4'H08120.0°120.0°
C06C08C4'H08A120.0°119.9°
C06C08C4'C3'177.2°175.0°
C06C08C4'C5'65.8°69.4°
C08C06C05H050.0°0.0°
C06C08H08H08A118.7°120.0°
C06C08C4'H4'55.2°53.0°
C08C4'C3'O0934.0°0.1°
C08C4'C5'N1'143.9°142.7°
C08C4'C3'C2'153.8°118.9°
C08C4'C3'C5'122.4°118.9°
C08C4'C3'H4'116.6°122.1°
C08C4'C5'H4'116.6°122.2°
C4'C08H08H08A118.7°120.1°
C08C4'C3'H3'85.8°122.1°
C08C4'C5'H5'96.2°98.5°
C08C4'C5'H5'A23.9°23.9°
O09C10C11H10120.0°120.0°
O09C10C11H10A120.0°120.0°
O09C10C11N1283.0°65.0°
C10O09C3'C2'38.9°91.5°
C10O09C3'C4'153.3°152.9°
O09C10H10H10A121.3°120.0°
O09C10C11H11157.0°175.0°
O09C10C11H11A37.0°55.0°
C10O09C3'H3'82.0°30.7°
O09C3'C2'N1'87.1°142.7°
C3'O09C10C11172.1°180.0°
O09C3'C2'C4'115.2°118.8°
O09C3'C2'H3'120.2°122.1°
O09C3'C4'H3'119.8°122.2°
O09C3'C4'C5'88.4°118.8°
C3'O09C10H1052.1°60.0°
C3'O09C10H10A67.9°60.0°
O09C3'C2'H2'32.9°24.0°
O09C3'C2'H2'A152.9°98.5°
O09C3'C4'H4'150.6°122.1°
C2'N1'C5'HN1'120.0°119.5°
N1'C2'C3'H2'120.0°118.7°
N1'C2'C3'H2'A120.0°118.8°
N1'C2'C3'C4'28.1°23.9°
C2'N1'C5'C4'5.0°39.5°
N1'C2'H2'H2'A122.5°122.5°
N1'C2'C3'H3'152.7°95.2°
C2'N1'C5'H5'125.0°158.3°
C2'N1'C5'H5'A115.0°79.3°
C5'N1'C2'C3'14.4°39.5°
N1'C5'C4'C3'22.5°23.9°
N1'C5'C4'H5'120.0°118.8°
N1'C5'C4'H5'A120.0°118.8°
C5'N1'C2'H2'134.4°79.3°
C5'N1'C2'H2'A105.6°158.2°
N1'C5'C4'H4'99.5°95.0°
N1'C5'H5'H5'A121.9°122.4°
C10C11N12H11120.0°120.0°
C10C11N12H11A120.0°120.0°
C10C11N12C13101.7°180.0°
C11C10H10H10A121.3°120.0°
C10C11H11H11A119.7°119.9°
C10C11N12HN12138.3°56.0°
C11N12C13HN12120.0°123.9°
C11N12C13C1425.0°180.0°
N12C11C10H1037.0°55.0°
N12C11C10H10A157.0°175.0°
N12C11H11H11A119.7°120.0°
C11N12C13H13145.0°60.1°
C11N12C13H13A95.0°60.0°
N12C13C14H13120.0°119.9°
N12C13C14H13A120.0°120.0°
N12C13C14F1531.1°60.0°
N12C13C14F1684.8°60.0°
N12C13C14C21151.5°180.0°
C13N12C11H1118.2°60.0°
C13N12C11H11A138.3°60.0°
N12C13H13H13A117.9°120.0°
C13C14F15F16121.0°120.1°
C13C14F15C21119.0°120.0°
C13C14F16C21120.6°120.0°
C13C14C21C2294.0°90.0°
C13C14C21C2686.2°90.4°
C14C13N12HN1295.0°56.1°
C14C13H13H13A117.9°120.1°
F15C14F16C21117.9°119.9°
F15C14C21C22143.5°30.0°
F15C14C21C2636.3°149.7°
F15C14C13H1388.9°180.0°
F15C14C13H13A151.1°60.0°
F16C14C21C2229.4°149.9°
F16C14C21C26150.5°29.7°
F16C14C13H13155.2°59.9°
F16C14C13H13A35.2°180.0°
C14C21C22C26179.8°179.7°
C14C21C22C23179.4°179.9°
C14C21C26C25179.1°179.7°
C21C14C13H1331.5°60.1°
C21C14C13H13A88.5°60.0°
C14C21C22H220.6°0.1°
C14C21C26H260.9°0.1°
C2'C3'C4'H3'120.4°119.0°
C2'C3'C4'C5'31.4°0.0°
C3'C2'N1'HN1'134.5°80.1°
C3'C2'H2'H2'A122.5°122.4°
C2'C3'C4'H4'89.6°119.0°
C21C22C23H22180.0°179.9°
C21C22C23F23179.0°180.0°
C21C22C23C240.1°0.1°
C22C21C26C250.7°0.7°
C22C21C26H26179.3°179.7°
C26C21C22C230.5°0.4°
C21C26C25C240.4°0.6°
C21C26C25CL25179.0°179.7°
C21C26C25H26180.0°179.6°
C26C21C22H22179.5°179.7°
C22C23F23C24178.9°179.9°
C22C23C24C250.5°0.1°
C22C23C24H24179.5°180.0°
F23C23C24C25179.4°180.0°
F23C23C22H220.9°0.1°
F23C23C24H240.6°0.1°
C23C24C25H24180.0°179.9°
C23C24C25CL25179.7°180.0°
C23C24C25C260.2°0.4°
C24C23C22H22179.8°180.0°
C24C25CL25C26179.5°179.6°
C24C25C26H26179.6°179.7°
CL25C25C24H240.3°0.1°
CL25C25C26H260.9°0.1°
C26C25C24H24179.8°179.8°
C3'C4'C5'H4'122.0°118.9°
C3'C4'C08H0857.2°55.0°
C3'C4'C08H08A62.8°65.1°
C4'C3'C2'H2'148.0°94.9°
C4'C3'C2'H2'A91.9°142.6°
C3'C4'C5'H5'142.5°142.6°
C3'C4'C5'H5'A97.5°94.9°
C5'C4'C08H08174.2°170.6°
C5'C4'C08H08A54.2°50.6°
C4'C5'N1'HN1'115.0°80.0°
C5'C4'C3'H3'151.8°119.0°
C4'C5'H5'H5'A122.0°122.5°
H07C07H07AH07B120.0°120.0°
H08C08C4'H4'64.8°67.0°
H08AC08C4'H4'175.2°172.9°
HN1'N1'C2'H2'105.6°161.2°
HN1'N1'C2'H2'A14.5°38.7°
HN1'N1'C5'H5'5.0°38.7°
HN1'N1'C5'H5'A125.0°161.2°
H10C10C11H1183.0°65.0°
H10C10C11H11A157.0°175.0°
H10AC10C11H1137.0°55.0°
H10AC10C11H11A83.0°65.0°
H11C11N12HN12101.8°176.0°
H11AC11N12HN1218.3°64.0°
HN12N12C13H1325.0°176.0°
HN12N12C13H13A145.0°63.9°
H2'C2'C3'H3'87.4°146.1°
H2'AC2'C3'H3'32.7°23.6°
H3'C3'C4'H4'30.8°0.1°
H4'C4'C5'H5'20.5°23.7°
H4'C4'C5'H5'A140.5°146.2°

222624

PDB entries from 2024-07-17

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