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JI5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1N1sing1.47Å1.44Å
C1C2sing1.53Å1.53Å
N1C3'sing1.47Å1.45Å
C2N2sing1.47Å1.46Å
N2C3sing1.47Å1.46Å
C3C4sing1.53Å1.53Å
C4C11sing1.51Å1.53Å
N1'C2'sing1.49Å1.46Å
N1'C5'sing1.49Å1.46Å
C11C12doub1.38Å1.38ÅAromatic
C11C16sing1.38Å1.40ÅAromatic
N11C21doub1.32Å1.36ÅAromatic
N11C61sing1.32Å1.37ÅAromatic
C12C13sing1.39Å1.38ÅAromatic
C13F13sing1.35Å1.34Å
C13C14doub1.38Å1.39ÅAromatic
C14C15sing1.38Å1.40ÅAromatic
C15C16doub1.38Å1.40ÅAromatic
C2'C3'sing1.54Å1.52Å
C21C31sing1.38Å1.40ÅAromatic
C21C71sing1.51Å1.52Å
C3'C4'sing1.54Å1.52Å
C31C41doub1.39Å1.40ÅAromatic
C4'C5'sing1.54Å1.54Å
C4'C71sing1.53Å1.54Å
C41C51sing1.38Å1.40ÅAromatic
C41C81sing1.51Å1.51Å
C51C61doub1.39Å1.40ÅAromatic
C61N61sing1.39Å1.36Å
C1H1sing1.09Å1.10Å
C1H1Asing1.09Å1.10Å
N1HN1sing1.01Å1.00Å
C2H2sing1.09Å1.10Å
C2H2Asing1.09Å1.10Å
N2HN2sing1.01Å1.00Å
C3H3sing1.09Å1.10Å
C3H3Asing1.09Å1.10Å
C4H4sing1.09Å1.10Å
C4H4Asing1.09Å1.10Å
N1'HN1'sing1.01Å1.00Å
C12H12sing1.08Å1.08Å
C14H14sing1.08Å1.08Å
C15H15sing1.08Å1.08Å
C16H16sing1.08Å1.08Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C31H31sing1.08Å1.08Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
C51H51sing1.08Å1.08Å
N61HN61sing0.97Å1.00Å
N61HN6Asing0.97Å1.00Å
C71H71sing1.09Å1.10Å
C71H71Asing1.09Å1.10Å
C81H81sing1.09Å1.10Å
C81H81Asing1.09Å1.10Å
C81H81Bsing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N1C1C2116.6°109.5°
C1N1C3'121.1°111.0°
N1C1H1107.1°109.5°
N1C1H1A107.2°109.5°
C1N1HN1105.8°111.0°
C1C2N2121.7°109.5°
C2C1H1107.1°109.5°
C2C1H1A107.1°109.5°
C1C2H2105.6°109.5°
C1C2H2A105.6°109.5°
N1C3'C2'104.6°110.3°
N1C3'C4'110.9°110.3°
C3'N1HN1105.7°111.0°
N1C3'H3'109.5°110.3°
C2N2C3114.0°111.0°
N2C2H2105.6°109.5°
N2C2H2A105.6°109.4°
C2N2HN2108.0°111.0°
N2C3C4115.7°109.5°
C3N2HN2108.0°111.0°
N2C3H3107.5°109.5°
N2C3H3A107.4°109.5°
C3C4C11108.1°109.5°
C4C3H3107.4°109.5°
C4C3H3A107.4°109.5°
C3C4H4109.9°109.4°
C3C4H4A110.0°109.5°
C4C11C12118.8°120.0°
C4C11C16122.1°119.9°
C11C4H4109.9°109.5°
C11C4H4A109.9°109.5°
C2'N1'C5'111.9°104.2°
N1'C2'C3'100.6°104.6°
C2'N1'HN1'108.7°111.0°
N1'C2'H2'112.5°110.5°
N1'C2'H2'A112.6°110.4°
N1'C5'C4'103.2°104.6°
C5'N1'HN1'108.6°111.0°
N1'C5'H5'111.6°110.4°
N1'C5'H5'A111.6°110.4°
C12C11C16119.1°120.0°
C11C12C13120.9°120.0°
C11C12H12119.5°120.0°
C11C16C15120.3°120.0°
C11C16H16119.8°120.0°
C21N11C61121.2°121.6°
N11C21C31120.0°120.9°
N11C21C71119.7°119.6°
N11C61C51120.6°120.6°
N11C61N61120.1°119.7°
C12C13F13117.8°120.0°
C12C13C14120.4°119.9°
C13C12H12119.5°120.0°
F13C13C14121.8°120.0°
C13C14C15119.6°120.0°
C13C14H14120.2°120.0°
C14C15C16119.7°120.0°
C15C14H14120.3°120.0°
C14C15H15120.1°119.9°
C16C15H15120.2°120.0°
C15C16H16119.8°119.9°
C2'C3'C4'101.9°105.1°
C3'C2'H2'112.6°110.4°
C3'C2'H2'A112.5°110.4°
C2'C3'H3'117.5°110.4°
C31C21C71120.3°119.6°
C21C31C41119.6°119.3°
C21C31H31120.2°120.3°
C21C71C4'111.3°109.5°
C21C71H71108.8°109.5°
C21C71H71A108.9°109.5°
C3'C4'C5'101.5°105.0°
C3'C4'C71115.7°110.3°
C4'C3'H3'111.9°110.4°
C3'C4'H4'112.6°110.4°
C31C41C51119.8°118.5°
C31C41C81120.1°120.7°
C41C31H31120.2°120.3°
C5'C4'C71114.2°110.3°
C5'C4'H4'114.1°110.3°
C4'C5'H5'111.6°110.4°
C4'C5'H5'A111.6°110.4°
C71C4'H4'99.4°110.4°
C4'C71H71108.9°109.4°
C4'C71H71A108.9°109.5°
C51C41C81120.1°120.8°
C41C51C61118.8°119.1°
C41C51H51120.6°120.4°
C41C81H81109.5°109.5°
C41C81H81A109.5°109.4°
C41C81H81B109.5°109.4°
C51C61N61119.3°119.7°
C61C51H51120.6°120.4°
C61N61HN61109.5°120.0°
C61N61HN6A109.5°120.0°
H1C1H1A111.7°109.4°
H2C2H2A113.1°109.5°
H3C3H3A111.4°109.4°
H4C4H4A109.0°109.5°
H2'C2'H2'A106.2°110.5°
H5'C5'H5'A107.2°110.4°
HN61N61HN6A109.5°120.0°
H71C71H71A110.1°109.5°
H81C81H81A109.4°109.5°
H81C81H81B109.4°109.5°
H81AC81H81B109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C1C2H1120.0°120.0°
N1C1C2H1A120.0°120.0°
C1N1C3'HN1120.0°124.0°
N1C1C2N212.1°180.0°
C1N1C3'C2'97.2°86.5°
C1N1C3'C4'153.7°157.9°
N1C1H1H1A117.1°120.0°
N1C1C2H2107.9°60.0°
N1C1C2H2A132.1°60.0°
C1N1C3'H3'29.7°35.7°
C2C1N1C3'159.2°180.0°
C1C2N2H2120.0°120.0°
C1C2N2H2A120.0°120.0°
C1C2N2C3176.7°180.0°
C2C1H1H1A117.0°120.0°
C2C1N1HN139.2°56.0°
C1C2H2H2A114.9°120.0°
C1C2N2HN263.3°56.0°
N1C3'C2'N1'73.3°142.8°
N1C3'C2'C4'115.6°118.9°
N1C3'C2'H3'121.7°122.2°
N1C3'C4'H3'122.6°122.2°
N1C3'C4'C5'66.7°118.9°
N1C3'C4'C7157.5°0.0°
C3'N1C1H139.2°60.0°
C3'N1C1H1A80.8°60.0°
N1C3'C2'H2'46.7°23.9°
N1C3'C2'H2'A166.7°98.5°
N1C3'C4'H4'170.9°122.3°
C2N2C3HN2120.0°124.0°
C2N2C3C4178.4°180.0°
N2C2C1H1132.1°60.0°
N2C2C1H1A107.9°60.0°
N2C2H2H2A114.9°120.0°
C2N2C3H361.6°60.0°
C2N2C3H3A58.4°60.0°
N2C3C4H3120.0°120.0°
N2C3C4H3A120.0°120.0°
N2C3C4C11170.9°180.0°
C3N2C2H256.7°60.0°
C3N2C2H2A63.3°60.0°
N2C3H3H3A117.5°120.0°
N2C3C4H450.9°60.0°
N2C3C4H4A69.1°60.0°
C3C4C11H4120.0°119.9°
C3C4C11H4A120.0°120.0°
C3C4C11C12103.8°90.0°
C3C4C11C1675.1°90.3°
C4C3N2HN258.4°56.0°
C4C3H3H3A117.4°120.0°
C3C4H4H4A120.6°120.0°
C4C11C12C16178.9°179.7°
C4C11C12C13178.8°180.0°
C4C11C16C15179.1°179.8°
C11C4C3H369.1°60.0°
C11C4C3H3A50.9°59.9°
C11C4H4H4A120.6°120.1°
C4C11C12H121.3°0.1°
C4C11C16H160.9°0.0°
C2'N1'C5'HN1'120.0°119.6°
N1'C2'C3'H2'120.0°118.9°
N1'C2'C3'H2'A120.0°118.7°
N1'C2'C3'C4'42.3°23.9°
C2'N1'C5'C4'2.3°39.5°
N1'C2'H2'H2'A123.6°122.4°
N1'C2'C3'H3'165.0°95.1°
C2'N1'C5'H5'122.3°158.3°
C2'N1'C5'H5'A117.7°79.3°
C5'N1'C2'C3'24.9°39.5°
N1'C5'C4'C3'28.7°23.8°
N1'C5'C4'H5'120.0°118.8°
N1'C5'C4'H5'A120.0°118.8°
N1'C5'C4'C71153.9°142.7°
C5'N1'C2'H2'144.9°79.3°
C5'N1'C2'H2'A95.1°158.2°
N1'C5'C4'H4'92.7°95.1°
N1'C5'H5'H5'A122.6°122.4°
C11C12C13H12180.0°180.0°
C11C12C13F13179.5°180.0°
C11C12C13C140.6°0.0°
C12C11C16C150.2°0.5°
C12C11C4H416.2°29.9°
C12C11C4H4A136.1°150.0°
C12C11C16H16179.8°179.7°
C16C11C12C130.2°0.3°
C11C16C15C140.2°0.5°
C11C16C15H16180.0°179.8°
C16C11C4H4164.9°149.7°
C16C11C4H4A45.0°29.7°
C16C11C12H12179.8°179.8°
C11C16C15H15179.8°179.7°
N11C21C31C71179.8°179.9°
N11C21C31C410.4°0.1°
N11C21C71C4'103.7°54.9°
C21N11C61C510.9°0.1°
C21N11C61N61179.2°180.0°
N11C21C31H31179.6°179.9°
N11C21C71H71136.4°65.0°
N11C21C71H71A16.3°175.0°
C61N11C21C310.2°0.1°
C61N11C21C71179.6°180.0°
N11C61C51C411.0°0.0°
N11C61C51N61178.2°179.9°
N11C61C51H51179.0°179.9°
N11C61N61HN610.0°0.0°
N11C61N61HN6A120.0°180.0°
C12C13F13C14178.9°180.0°
C12C13C14C150.6°0.0°
C12C13C14H14179.4°179.9°
F13C13C14C15179.5°180.0°
F13C13C12H120.5°0.0°
F13C13C14H140.5°0.0°
C13C14C15H14180.0°179.9°
C13C14C15C160.2°0.3°
C14C13C12H12179.4°180.0°
C13C14C15H15179.8°180.0°
C14C15C16H15180.0°179.7°
C14C15C16H16179.8°179.7°
C16C15C14H14179.8°179.8°
C2'C3'C4'H3'126.5°119.0°
C2'C3'C4'C5'44.2°0.0°
C2'C3'C4'C71168.4°118.8°
C2'C3'N1HN122.8°37.5°
C3'C2'N1'HN1'144.9°80.0°
C3'C2'H2'H2'A123.6°122.4°
C2'C3'C4'H4'78.3°118.9°
C21C31C41H31180.0°179.9°
C31C21C71C4'76.1°125.0°
C21C31C41C510.3°0.0°
C21C31C41C81179.7°180.0°
C31C21C71H7143.9°115.1°
C31C21C71H71A163.9°4.9°
C21C71C4'C3'176.8°175.0°
C71C21C31C41179.8°180.0°
C21C71C4'C5'66.0°69.4°
C21C71C4'H71120.0°119.9°
C21C71C4'H71A120.0°120.0°
C71C21C31H310.2°0.1°
C21C71C4'H4'55.9°52.7°
C21C71H71H71A119.3°120.0°
C3'C4'C5'C71125.2°118.9°
C3'C4'C5'H4'121.4°118.9°
C3'C4'C71H4'120.8°122.3°
C4'C3'N1HN186.3°78.1°
C4'C3'C2'H2'162.2°94.9°
C4'C3'C2'H2'A77.7°142.6°
C3'C4'C5'H5'148.7°142.6°
C3'C4'C5'H5'A91.3°95.0°
C3'C4'C71H7156.8°55.0°
C3'C4'C71H71A63.2°65.0°
C31C41C51C81180.0°180.0°
C31C41C51C610.4°0.0°
C31C41C51H51179.6°180.0°
C31C41C81H8190.0°90.0°
C31C41C81H81A150.0°150.0°
C31C41C81H81B30.0°30.0°
C5'C4'C71H4'121.9°122.1°
C4'C5'N1'HN1'117.7°80.1°
C5'C4'C3'H3'170.7°118.9°
C4'C5'H5'H5'A122.5°122.4°
C5'C4'C71H71174.0°170.7°
C5'C4'C71H71A54.0°50.6°
C71C4'C3'H3'65.2°122.2°
C71C4'C5'H5'86.1°98.5°
C71C4'C5'H5'A33.9°23.9°
C4'C71H71H71A119.3°120.0°
C41C51C61H51180.0°180.0°
C41C51C61N61179.2°179.9°
C51C41C31H31179.7°180.0°
C51C41C81H8190.0°90.0°
C51C41C81H81A30.0°30.1°
C51C41C81H81B150.0°150.0°
C81C41C51C61179.6°180.0°
C81C41C31H310.3°0.0°
C81C41C51H510.4°0.0°
C41C81H81H81A120.0°120.0°
C41C81H81H81B120.0°120.0°
C41C81H81AH81B120.0°119.9°
C51C61N61HN61178.3°180.0°
C51C61N61HN6A58.2°0.1°
N61C61C51H510.7°0.0°
C61N61HN61HN6A120.0°180.0°
H1C1N1HN180.8°64.0°
H1C1C2H212.1°180.0°
H1C1C2H2A107.9°60.0°
H1AC1N1HN1159.2°176.0°
H1AC1C2H2132.1°60.0°
H1AC1C2H2A12.1°179.9°
HN1N1C3'H3'149.7°159.7°
H2C2N2HN2176.7°176.0°
H2AC2N2HN256.7°64.0°
HN2N2C3H3178.3°176.1°
HN2N2C3H3A61.6°64.0°
H3C3C4H4170.9°180.0°
H3C3C4H4A50.9°60.1°
H3AC3C4H469.1°60.0°
H3AC3C4H4A170.9°180.0°
HN1'N1'C2'H2'95.1°161.1°
HN1'N1'C2'H2'A24.9°38.7°
HN1'N1'C5'H5'2.3°38.7°
HN1'N1'C5'H5'A122.3°161.1°
H14C14C15H150.2°0.1°
H15C15C16H160.2°0.0°
H2'C2'C3'H3'75.1°146.1°
H2'AC2'C3'H3'45.0°23.6°
H3'C3'C4'H4'48.2°0.1°
H4'C4'C5'H5'27.3°23.7°
H4'C4'C5'H5'A147.3°146.2°
H4'C4'C71H7164.1°67.2°
H4'C4'C71H71A175.9°172.7°
H81C81H81AH81B120.0°120.1°

222415

PDB entries from 2024-07-10

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