English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

JGB

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O11	C10	sing	1.36Å	1.45Å
C12	C10	doub	1.39Å	1.38Å	Aromatic
C12	C13	sing	1.38Å	1.41Å	Aromatic
C10	C08	sing	1.40Å	1.39Å	Aromatic
C13	C06	doub	1.40Å	1.38Å	Aromatic
C08	O09	sing	1.36Å	1.35Å
C08	C07	doub	1.38Å	1.42Å	Aromatic
C06	C07	sing	1.40Å	1.39Å	Aromatic
C06	C05	sing	1.46Å	1.52Å
C05	C04	doub	1.38Å	1.30Å
C04	C14	sing	1.43Å	1.51Å
C04	C02	sing	1.47Å	1.53Å
O03	C02	doub	1.22Å	1.21Å
C14	N15	trip	1.14Å	1.13Å
C02	N01	sing	1.35Å	1.51Å
C05	H1	sing	1.08Å	1.08Å
C07	H2	sing	1.08Å	1.08Å
C12	H3	sing	1.08Å	1.08Å
C13	H4	sing	1.08Å	1.08Å
N01	H5	sing	0.97Å	1.00Å
N01	H6	sing	0.97Å	1.00Å
O09	H7	sing	0.97Å	0.95Å
O11	H8	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O11	C10	C12	118.8°	119.9°
O11	C10	C08	120.6°	119.9°
C10	O11	H8	109.5°	114.0°
C10	C12	C13	119.5°	120.2°
C12	C10	C08	120.6°	120.2°
C10	C12	H3	120.3°	119.9°
C12	C13	C06	120.4°	120.0°
C13	C12	H3	120.3°	119.9°
C12	C13	H4	119.8°	120.0°
C10	C08	O09	120.7°	120.0°
C10	C08	C07	119.8°	120.0°
C13	C06	C07	120.1°	119.8°
C13	C06	C05	115.6°	120.1°
C06	C13	H4	119.8°	120.0°
O09	C08	C07	119.6°	120.0°
C08	O09	H7	109.5°	114.0°
C08	C07	C06	119.6°	119.8°
C08	C07	H2	120.2°	120.1°
C07	C06	C05	124.1°	120.1°
C06	C07	H2	120.2°	120.1°
C06	C05	C04	129.4°	120.0°
C06	C05	H1	115.3°	120.0°
C05	C04	C14	125.3°	120.0°
C05	C04	C02	115.8°	120.0°
C04	C05	H1	115.3°	120.0°
C14	C04	C02	118.9°	120.0°
C04	C14	N15	179.1°	179.9°
C04	C02	O03	118.9°	120.0°
C04	C02	N01	120.3°	120.0°
O03	C02	N01	120.7°	120.0°
C02	N01	H5	120.0°	120.0°
C02	N01	H6	120.0°	120.0°
H5	N01	H6	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O11	C10	C12	C08	178.9°	179.9°
O11	C10	C12	C13	179.8°	179.8°
O11	C10	C08	O09	0.3°	0.0°
O11	C10	C08	C07	179.7°	180.0°
O11	C10	C12	H3	0.2°	0.1°
C10	C12	C13	H3	180.0°	179.7°
C10	C12	C13	C06	1.1°	0.5°
C12	C10	C08	O09	179.2°	180.0°
C12	C10	C08	C07	0.9°	0.0°
C10	C12	C13	H4	178.9°	180.0°
C12	C10	O11	H8	180.0°	90.0°
C13	C12	C10	C08	0.9°	0.3°
C12	C13	C06	H4	180.0°	179.5°
C12	C13	C06	C07	1.4°	0.5°
C12	C13	C06	C05	177.5°	179.7°
C10	C08	O09	C07	179.9°	180.0°
C10	C08	C07	C06	1.1°	0.0°
C10	C08	C07	H2	178.9°	180.0°
C08	C10	C12	H3	179.1°	180.0°
C10	C08	O09	H7	180.0°	90.0°
C08	C10	O11	H8	1.1°	90.0°
C13	C06	C07	C08	1.3°	0.3°
C13	C06	C07	C05	175.8°	179.7°
C13	C06	C05	C04	174.2°	145.4°
C13	C06	C05	H1	5.9°	34.6°
C13	C06	C07	H2	178.7°	179.8°
C06	C13	C12	H3	178.9°	179.8°
O09	C08	C07	C06	179.0°	180.0°
O09	C08	C07	H2	1.0°	0.0°
C08	C07	C06	H2	180.0°	180.0°
C08	C07	C06	C05	177.2°	180.0°
C07	C08	O09	H7	0.1°	90.0°
C07	C06	C05	C04	1.8°	34.8°
C07	C06	C05	H1	178.1°	145.1°
C07	C06	C13	H4	178.6°	180.0°
C06	C05	C04	H1	180.0°	180.0°
C06	C05	C04	C14	3.7°	7.6°
C06	C05	C04	C02	175.8°	172.4°
C05	C06	C07	H2	2.8°	0.0°
C05	C06	C13	H4	2.4°	0.2°
C05	C04	C14	C02	179.5°	180.0°
C05	C04	C02	O03	0.0°	0.3°
C05	C04	C14	N15	138.0°	69.9°
C05	C04	C02	N01	176.5°	180.0°
C14	C04	C02	O03	179.6°	179.7°
C14	C04	C02	N01	3.1°	0.0°
C14	C04	C05	H1	176.3°	172.4°
C04	C02	O03	N01	176.5°	179.7°
C02	C04	C14	N15	42.5°	110.1°
C02	C04	C05	H1	4.2°	7.6°
C04	C02	N01	H5	176.4°	0.0°
C04	C02	N01	H6	3.6°	180.0°
O03	C02	N01	H5	0.0°	179.7°
O03	C02	N01	H6	180.0°	0.3°
C02	N01	H5	H6	180.0°	180.0°
H3	C12	C13	H4	1.1°	0.3°

222415

PDB entries from 2024-07-10

PDB statistics

PDBj update info

Contact PDBj

numon