JFZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3'	N1'	sing	1.22Å	1.44Å
O2'	N1'	doub	1.22Å	1.42Å
N1'	C4'	sing	1.48Å	1.34Å
C3'	C4'	doub	1.38Å	1.40Å	Aromatic
C3'	C2'	sing	1.38Å	1.39Å	Aromatic
C4'	C5'	sing	1.38Å	1.40Å	Aromatic
C2'	C1'	doub	1.39Å	1.40Å	Aromatic
C5'	C6'	doub	1.38Å	1.39Å	Aromatic
C1'	C6'	sing	1.39Å	1.40Å	Aromatic
C1'	O1	sing	1.36Å	1.38Å
O1	C1	sing	1.43Å	1.47Å
C5	C6	sing	1.53Å	1.54Å
C5	O5	sing	1.43Å	1.48Å
C5	C4	sing	1.53Å	1.55Å
C1	O5	sing	1.43Å	1.47Å
C1	C2	sing	1.53Å	1.54Å
C4	C3	sing	1.53Å	1.53Å
C4	O4	sing	1.43Å	1.44Å
O2	C2	sing	1.43Å	1.41Å
C2	C3	sing	1.53Å	1.55Å
C3	O3	sing	1.43Å	1.23Å
C1	H1	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C4	H4	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
C5	H5	sing	1.09Å	1.10Å
C6	H61	sing	1.09Å	1.10Å
C6	H62	sing	1.09Å	1.10Å
C6	H63	sing	1.09Å	1.10Å
C2'	H10	sing	1.08Å	1.08Å
C3'	H11	sing	1.08Å	1.08Å
C5'	H12	sing	1.08Å	1.08Å
C6'	H13	sing	1.08Å	1.08Å
C3	H3	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3'	N1'	O2'	119.5°	120.0°
O3'	N1'	C4'	121.0°	120.0°
O2'	N1'	C4'	119.5°	120.0°
N1'	C4'	C3'	120.0°	120.0°
N1'	C4'	C5'	119.8°	119.9°
C4'	C3'	C2'	119.8°	120.0°
C3'	C4'	C5'	120.2°	120.1°
C4'	C3'	H11	120.1°	120.0°
C3'	C2'	C1'	120.2°	120.0°
C3'	C2'	H10	119.9°	120.0°
C2'	C3'	H11	120.1°	120.0°
C4'	C5'	C6'	120.1°	120.1°
C4'	C5'	H12	120.0°	120.0°
C2'	C1'	C6'	120.1°	119.8°
C2'	C1'	O1	117.6°	120.1°
C1'	C2'	H10	119.9°	120.0°
C5'	C6'	C1'	119.7°	119.9°
C6'	C5'	H12	120.0°	119.9°
C5'	C6'	H13	120.2°	120.1°
C6'	C1'	O1	122.3°	120.1°
C1'	C6'	H13	120.2°	120.0°
C1'	O1	C1	118.9°	117.0°
O1	C1	O5	113.9°	109.5°
O1	C1	C2	110.4°	109.5°
O1	C1	H1	108.2°	109.5°
C6	C5	O5	106.8°	109.5°
C6	C5	C4	113.5°	109.5°
C6	C5	H5	107.8°	109.5°
C5	C6	H61	109.5°	109.5°
C5	C6	H62	109.5°	109.5°
C5	C6	H63	109.5°	109.5°
O5	C5	C4	112.4°	109.4°
C5	O5	C1	114.5°	114.1°
O5	C5	H5	108.5°	109.5°
C5	C4	C3	111.7°	109.2°
C5	C4	O4	109.8°	109.5°
C5	C4	H4	110.2°	109.6°
C4	C5	H5	107.7°	109.5°
O5	C1	C2	108.6°	109.4°
O5	C1	H1	108.2°	109.5°
C1	C2	O2	111.7°	109.5°
C1	C2	C3	110.8°	109.2°
C2	C1	H1	107.3°	109.5°
C1	C2	H2	106.9°	109.5°
C3	C4	O4	102.7°	109.5°
C4	C3	C2	118.3°	109.0°
C4	C3	O3	119.6°	109.5°
C3	C4	H4	110.5°	109.6°
C4	C3	H3	94.4°	109.6°
O4	C4	H4	111.8°	109.5°
C4	O4	HO4	109.5°	114.0°
O2	C2	C3	111.6°	109.5°
O2	C2	H2	108.6°	109.6°
C2	O2	HO2	109.5°	114.0°
C2	C3	O3	120.0°	109.6°
C3	C2	H2	106.9°	109.5°
C2	C3	H3	94.4°	109.5°
O3	C3	H3	95.6°	109.6°
C3	O3	HO3	109.5°	114.0°
H61	C6	H62	109.5°	109.5°
H61	C6	H63	109.5°	109.4°
H62	C6	H63	109.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3'	N1'	O2'	C4'	179.1°	180.0°
O3'	N1'	C4'	C3'	29.9°	180.0°
O3'	N1'	C4'	C5'	150.1°	0.0°
O2'	N1'	C4'	C3'	150.9°	0.0°
O2'	N1'	C4'	C5'	29.0°	180.0°
N1'	C4'	C3'	C5'	180.0°	180.0°
N1'	C4'	C3'	C2'	179.9°	180.0°
N1'	C4'	C5'	C6'	179.8°	180.0°
N1'	C4'	C3'	H11	0.1°	0.0°
N1'	C4'	C5'	H12	0.1°	0.0°
C4'	C3'	C2'	H11	180.0°	180.0°
C4'	C3'	C2'	C1'	0.3°	0.0°
C3'	C4'	C5'	C6'	0.2°	0.0°
C4'	C3'	C2'	H10	179.7°	180.0°
C3'	C4'	C5'	H12	179.8°	180.0°
C2'	C3'	C4'	C5'	0.1°	0.0°
C3'	C2'	C1'	H10	180.0°	180.0°
C3'	C2'	C1'	C6'	0.8°	0.0°
C3'	C2'	C1'	O1	179.6°	179.7°
C4'	C5'	C6'	H12	180.0°	180.0°
C4'	C5'	C6'	C1'	0.2°	0.0°
C5'	C4'	C3'	H11	179.8°	180.0°
C4'	C5'	C6'	H13	179.8°	179.7°
C2'	C1'	C6'	C5'	0.7°	0.0°
C2'	C1'	C6'	O1	178.8°	179.7°
C2'	C1'	O1	C1	154.1°	0.3°
C1'	C2'	C3'	H11	179.7°	180.0°
C2'	C1'	C6'	H13	179.3°	179.7°
C5'	C6'	C1'	H13	180.0°	179.8°
C5'	C6'	C1'	O1	179.4°	179.7°
C6'	C1'	O1	C1	27.1°	180.0°
C6'	C1'	C2'	H10	179.2°	180.0°
C1'	C6'	C5'	H12	179.8°	180.0°
C1'	O1	C1	O5	67.8°	65.0°
C1'	O1	C1	C2	169.7°	175.1°
C1'	O1	C1	H1	52.6°	55.0°
O1	C1'	C2'	H10	0.4°	0.3°
O1	C1'	C6'	H13	0.5°	0.0°
O1	C1	O5	C5	59.7°	58.8°
O1	C1	O5	C2	123.5°	120.0°
O1	C1	O5	H1	120.3°	120.1°
O1	C1	C2	H1	117.7°	120.1°
O1	C1	C2	O2	52.9°	57.5°
O1	C1	C2	C3	72.2°	62.3°
O1	C1	C2	H2	171.6°	177.7°
C6	C5	O5	C4	125.1°	120.0°
C6	C5	O5	H5	116.0°	120.1°
C6	C5	C4	H5	119.3°	120.1°
C6	C5	O5	C1	176.5°	178.9°
C6	C5	C4	C3	163.2°	177.6°
C6	C5	C4	O4	49.9°	57.7°
C6	C5	C4	H4	73.7°	62.5°
C5	C6	H61	H62	120.0°	120.0°
C5	C6	H61	H63	120.0°	120.0°
C5	C6	H62	H63	120.0°	120.0°
O5	C5	C4	H5	119.4°	120.0°
C5	O5	C1	C2	63.8°	61.2°
O5	C5	C4	C3	41.9°	57.6°
O5	C5	C4	O4	71.4°	62.3°
C5	O5	C1	H1	179.9°	178.9°
O5	C5	C4	H4	165.0°	177.6°
O5	C5	C6	H61	180.0°	60.0°
O5	C5	C6	H62	60.0°	180.0°
O5	C5	C6	H63	60.0°	60.0°
C4	C5	O5	C1	58.5°	61.2°
C5	C4	C3	O4	117.6°	119.9°
C5	C4	C3	H4	123.0°	120.0°
C5	C4	O4	H4	122.6°	120.2°
C5	C4	C3	C2	37.0°	57.0°
C5	C4	C3	O3	159.4°	176.9°
C5	C4	O4	HO4	180.0°	60.3°
C4	C5	C6	H61	55.6°	59.9°
C4	C5	C6	H62	175.6°	60.1°
C4	C5	C6	H63	64.4°	179.9°
C5	C4	C3	H3	60.4°	62.9°
O5	C1	C2	H1	116.7°	120.0°
O5	C1	C2	O2	178.4°	177.5°
O5	C1	C2	C3	53.3°	57.6°
O5	C1	C2	H2	62.8°	62.3°
C1	O5	C5	H5	60.5°	58.8°
C1	C2	C3	C4	43.3°	57.0°
C1	C2	O2	C3	124.7°	119.7°
C1	C2	O2	H2	117.7°	120.1°
C1	C2	C3	H2	116.2°	119.9°
C1	C2	C3	O3	153.2°	176.9°
C1	C2	O2	HO2	180.0°	60.0°
C1	C2	C3	H3	54.2°	62.9°
C3	C4	O4	H4	118.5°	120.2°
C4	C3	C2	O2	168.5°	176.9°
C4	C3	C2	O3	163.5°	119.9°
C4	C3	C2	H3	97.5°	119.9°
C4	C3	O3	H3	98.3°	120.2°
C4	C3	C2	H2	72.9°	62.9°
C3	C4	O4	HO4	61.1°	180.0°
C3	C4	C5	H5	77.6°	62.4°
C4	C3	O3	HO3	180.0°	179.6°
O4	C4	C3	C2	80.5°	62.9°
O4	C4	C3	O3	83.0°	57.0°
O4	C4	C5	H5	169.2°	177.7°
O4	C4	C3	H3	178.0°	177.2°
O2	C2	C3	H2	118.6°	120.2°
O2	C2	C3	O3	28.0°	63.3°
O2	C2	C1	H1	64.8°	62.6°
O2	C2	C3	H3	71.0°	56.9°
C2	C3	O3	H3	98.4°	120.2°
C3	C2	C1	H1	170.1°	177.6°
C3	C2	O2	HO2	55.3°	179.7°
C2	C3	C4	H4	160.0°	176.9°
C2	C3	O3	HO3	16.7°	60.0°
O3	C3	C2	H2	90.6°	56.9°
O3	C3	C4	H4	36.4°	63.1°
H1	C1	C2	H2	53.9°	57.6°
H2	C2	O2	HO2	62.2°	60.1°
H2	C2	C3	H3	170.4°	177.2°
H4	C4	O4	HO4	57.4°	59.9°
H4	C4	C5	H5	45.6°	57.6°
H4	C4	C3	H3	62.6°	57.1°
H5	C5	C6	H61	63.6°	180.0°
H5	C5	C6	H62	56.5°	60.0°
H5	C5	C6	H63	176.4°	60.0°
H61	C6	H62	H63	120.0°	120.0°
H10	C2'	C3'	H11	0.3°	0.0°
H12	C5'	C6'	H13	0.2°	0.3°
H3	C3	O3	HO3	81.7°	60.2°

Release date:	2019-02-27
Definition date:	2019-02-19
Last modified:	2020-07-17
Release status:	REL
Processing site:	EBI
Derived from:	2WVU