English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

JF6

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.38Å	1.43Å	Aromatic
C1	C6	doub	1.38Å	1.41Å	Aromatic
C2	C3	doub	1.38Å	1.39Å	Aromatic
C6	C5	sing	1.38Å	1.40Å	Aromatic
C3	C4	sing	1.39Å	1.40Å	Aromatic
C5	C4	doub	1.39Å	1.43Å	Aromatic
C4	C7	sing	1.48Å	1.45Å
C7	C8	sing	1.47Å	1.46Å	Aromatic
C7	N11	doub	1.31Å	1.37Å	Aromatic
C8	N9	doub	1.30Å	1.36Å	Aromatic
C8	N12	sing	1.39Å	1.40Å
N11	O10	sing	1.42Å	1.38Å	Aromatic
N9	O10	sing	1.42Å	1.40Å	Aromatic
C1	H1	sing	1.08Å	1.08Å
C2	H2	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C3	H3	sing	1.08Å	1.08Å
C5	H5	sing	1.08Å	1.08Å
N12	H121	sing	0.97Å	1.00Å
N12	H122	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	C6	120.3°	120.2°
C1	C2	C3	118.8°	120.1°
C2	C1	H1	119.9°	119.9°
C1	C2	H2	120.6°	119.9°
C1	C6	C5	120.6°	120.2°
C6	C1	H1	119.8°	119.9°
C1	C6	H6	119.7°	119.9°
C2	C3	C4	121.4°	119.9°
C3	C2	H2	120.6°	119.9°
C2	C3	H3	119.3°	120.1°
C6	C5	C4	118.9°	119.9°
C5	C6	H6	119.7°	119.9°
C6	C5	H5	120.5°	120.1°
C3	C4	C5	119.9°	119.8°
C3	C4	C7	118.4°	120.1°
C4	C3	H3	119.3°	120.1°
C5	C4	C7	121.7°	120.1°
C4	C5	H5	120.6°	120.1°
C4	C7	C8	126.5°	125.9°
C4	C7	N11	123.6°	125.9°
C8	C7	N11	109.9°	108.2°
C7	C8	N9	106.6°	108.3°
C7	C8	N12	125.4°	125.8°
C7	N11	O10	104.3°	107.9°
N9	C8	N12	128.0°	125.9°
C8	N9	O10	106.5°	107.9°
C8	N12	H121	109.5°	120.0°
C8	N12	H122	109.5°	120.0°
N11	O10	N9	112.7°	107.6°
H121	N12	H122	109.4°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	C6	H1	180.0°	179.8°
C1	C2	C3	H2	180.0°	180.0°
C2	C1	C6	C5	1.4°	0.0°
C1	C2	C3	C4	1.4°	0.0°
C2	C1	C6	H6	178.6°	179.9°
C1	C2	C3	H3	178.6°	180.0°
C6	C1	C2	C3	1.4°	0.0°
C1	C6	C5	H6	180.0°	179.9°
C1	C6	C5	C4	1.2°	0.0°
C6	C1	C2	H2	178.5°	180.0°
C1	C6	C5	H5	178.8°	179.9°
C2	C3	C4	H3	180.0°	179.9°
C2	C3	C4	C5	1.2°	0.1°
C2	C3	C4	C7	178.4°	180.0°
C3	C2	C1	H1	178.5°	179.7°
C6	C5	C4	C3	1.1°	0.1°
C6	C5	C4	H5	180.0°	180.0°
C6	C5	C4	C7	178.5°	180.0°
C5	C6	C1	H1	178.6°	179.7°
C3	C4	C5	C7	179.5°	180.0°
C3	C4	C7	C8	127.6°	144.9°
C3	C4	C7	N11	52.4°	35.3°
C4	C3	C2	H2	178.6°	180.0°
C3	C4	C5	H5	179.0°	179.9°
C5	C4	C7	C8	51.9°	35.1°
C5	C4	C7	N11	128.0°	144.7°
C4	C5	C6	H6	178.8°	179.9°
C5	C4	C3	H3	178.8°	180.0°
C4	C7	C8	N11	180.0°	179.8°
C4	C7	C8	N9	180.0°	180.0°
C4	C7	C8	N12	0.5°	0.1°
C4	C7	N11	O10	179.6°	180.0°
C7	C4	C3	H3	1.7°	0.0°
C7	C4	C5	H5	1.5°	0.1°
C7	C8	N9	N12	179.5°	179.9°
C8	C7	N11	O10	0.3°	0.2°
C7	C8	N9	O10	0.3°	0.1°
C7	C8	N12	H121	179.4°	0.1°
C7	C8	N12	H122	59.4°	179.9°
N11	C7	C8	N9	0.0°	0.2°
N11	C7	C8	N12	179.5°	179.7°
C7	N11	O10	N9	0.6°	0.2°
C8	N9	O10	N11	0.6°	0.1°
N9	C8	N12	H121	0.0°	180.0°
N9	C8	N12	H122	120.0°	0.0°
N12	C8	N9	O10	179.2°	179.9°
C8	N12	H121	H122	120.0°	180.0°
H1	C1	C2	H2	1.5°	0.2°
H1	C1	C6	H6	1.4°	0.3°
H2	C2	C3	H3	1.4°	0.1°
H6	C6	C5	H5	1.2°	0.1°

224931

PDB entries from 2024-09-11

PDB statistics

PDBj update info

Contact PDBj

numon