JES

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O10	P	doub	1.48Å	1.48Å
O8	P	sing	1.61Å	1.54Å
P	O9	sing	1.61Å	1.52Å
P	O7	sing	1.61Å	1.62Å
O2	C2	sing	1.43Å	1.36Å
O3	C3	sing	1.43Å	1.46Å
O7	C7	sing	1.43Å	1.39Å
C7	C6	sing	1.53Å	1.47Å
C2	C3	sing	1.53Å	1.38Å
C2	C1	sing	1.53Å	1.44Å
C4	C3	sing	1.53Å	1.35Å
C4	O4	sing	1.43Å	1.39Å
C4	C5	sing	1.53Å	1.44Å
C8	C1	sing	1.53Å	1.18Å
C8	O32	sing	1.43Å	1.45Å
C1	O5	sing	1.43Å	1.45Å
O5	C5	sing	1.43Å	1.33Å
C5	C6	sing	1.53Å	1.43Å
C6	O6	sing	1.43Å	1.32Å
C6	H6	sing	1.09Å	1.10Å
C5	H5	sing	1.09Å	1.10Å
C4	H4	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
C1	H11	sing	1.09Å	1.10Å
C8	H1	sing	1.09Å	1.10Å
C8	H7	sing	1.09Å	1.10Å
C7	H8	sing	1.09Å	1.10Å
C7	H9	sing	1.09Å	1.10Å
O9	H10	sing	0.97Å	0.95Å
O8	H12	sing	0.97Å	0.95Å
O6	H13	sing	0.97Å	0.95Å
O4	H14	sing	0.97Å	0.95Å
C3	H3	sing	1.09Å	1.10Å
O3	H15	sing	0.97Å	0.95Å
O2	H16	sing	0.97Å	0.95Å
O32	H17	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O10	P	O8	114.4°	109.5°
O10	P	O9	113.2°	109.4°
O10	P	O7	104.6°	109.4°
O8	P	O9	113.9°	109.5°
O8	P	O7	103.3°	109.5°
P	O8	H12	109.5°	114.0°
O9	P	O7	106.0°	109.5°
P	O9	H10	109.5°	114.0°
P	O7	C7	122.2°	123.0°
O2	C2	C3	111.0°	109.5°
O2	C2	C1	110.3°	109.5°
O2	C2	H2	108.6°	109.6°
C2	O2	H16	109.5°	114.0°
O3	C3	C2	110.4°	109.6°
O3	C3	C4	110.0°	109.5°
O3	C3	H3	107.2°	109.6°
C3	O3	H15	109.5°	114.0°
O7	C7	C6	112.0°	109.5°
O7	C7	H8	108.9°	109.5°
O7	C7	H9	108.8°	109.4°
C7	C6	C5	114.1°	109.5°
C7	C6	O6	109.6°	109.5°
C7	C6	H6	107.5°	109.5°
C6	C7	H8	108.8°	109.5°
C6	C7	H9	108.9°	109.5°
C3	C2	C1	111.0°	109.1°
C2	C3	C4	112.2°	109.1°
C3	C2	H2	108.4°	109.5°
C2	C3	H3	108.3°	109.6°
C2	C1	C8	108.7°	109.5°
C2	C1	O5	111.2°	109.4°
C1	C2	H2	107.5°	109.5°
C2	C1	H11	107.9°	109.5°
C3	C4	O4	107.9°	109.6°
C3	C4	C5	111.2°	109.2°
C3	C4	H4	109.5°	109.5°
C4	C3	H3	108.6°	109.5°
O4	C4	C5	111.1°	109.5°
O4	C4	H4	109.0°	109.6°
C4	O4	H14	109.5°	114.0°
C4	C5	O5	108.8°	109.4°
C4	C5	C6	114.4°	109.5°
C4	C5	H5	107.2°	109.5°
C5	C4	H4	108.2°	109.5°
C1	C8	O32	118.9°	109.5°
C8	C1	O5	109.2°	109.5°
C8	C1	H11	112.1°	109.5°
C1	C8	H1	107.1°	109.5°
C1	C8	H7	107.1°	109.4°
O32	C8	H1	107.1°	109.5°
O32	C8	H7	107.1°	109.5°
C8	O32	H17	109.5°	114.0°
C1	O5	C5	114.5°	114.1°
O5	C1	H11	107.8°	109.5°
O5	C5	C6	110.0°	109.5°
O5	C5	H5	108.8°	109.4°
C5	C6	O6	108.2°	109.4°
C5	C6	H6	107.9°	109.5°
C6	C5	H5	107.5°	109.5°
O6	C6	H6	109.5°	109.5°
C6	O6	H13	109.5°	114.0°
H1	C8	H7	109.5°	109.5°
H8	C7	H9	109.4°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O10	P	O8	O9	132.4°	120.0°
O10	P	O8	O7	113.1°	120.0°
O10	P	O9	O7	114.1°	120.0°
O10	P	O7	C7	68.7°	55.0°
O10	P	O9	H10	0.0°	60.0°
O10	P	O8	H12	0.0°	180.0°
O8	P	O9	O7	112.9°	120.1°
O8	P	O7	C7	51.4°	65.0°
O8	P	O9	H10	133.0°	60.0°
O9	P	O7	C7	171.5°	175.0°
O9	P	O8	H12	132.4°	60.1°
P	O7	C7	C6	141.1°	180.0°
P	O7	C7	H8	98.5°	60.0°
P	O7	C7	H9	20.7°	59.9°
O7	P	O9	H10	114.1°	180.0°
O7	P	O8	H12	113.1°	60.0°
O2	C2	C3	O3	55.1°	57.0°
O2	C2	C3	C1	123.1°	119.9°
O2	C2	C3	H2	119.1°	120.3°
O2	C2	C1	H2	118.2°	120.2°
O2	C2	C3	C4	68.0°	62.9°
O2	C2	C1	C8	44.0°	57.7°
O2	C2	C1	O5	76.2°	62.3°
O2	C2	C1	H11	165.7°	177.7°
O2	C2	C3	H3	172.1°	177.2°
O3	C3	C2	C4	123.1°	119.9°
O3	C3	C2	H3	117.1°	120.2°
O3	C3	C2	C1	178.1°	176.9°
O3	C3	C4	H3	117.0°	120.2°
O3	C3	C4	O4	53.5°	63.2°
O3	C3	C4	C5	175.6°	176.9°
O3	C3	C4	H4	64.9°	57.0°
O3	C3	C2	H2	64.0°	63.3°
O7	C7	C6	H8	120.4°	120.0°
O7	C7	C6	H9	120.4°	120.0°
O7	C7	C6	C5	171.1°	175.0°
O7	C7	C6	O6	67.4°	65.0°
O7	C7	C6	H6	51.6°	55.0°
O7	C7	H8	H9	118.8°	119.9°
C7	C6	C5	C4	69.4°	180.0°
C7	C6	C5	O5	53.3°	60.0°
C7	C6	C5	O6	122.3°	120.0°
C7	C6	C5	H6	119.3°	120.0°
C7	C6	O6	H6	117.7°	120.0°
C7	C6	C5	H5	171.6°	60.0°
C6	C7	H8	H9	118.8°	120.0°
C7	C6	O6	H13	180.0°	60.0°
C3	C2	C1	H2	118.4°	119.9°
C2	C3	C4	H3	119.7°	119.9°
C2	C3	C4	O4	176.8°	176.9°
C2	C3	C4	C5	61.1°	57.0°
C3	C2	C1	C8	167.4°	177.6°
C3	C2	C1	O5	47.2°	57.6°
C2	C3	C4	H4	58.4°	62.9°
C3	C2	C1	H11	70.8°	62.4°
C2	C3	O3	H15	180.0°	60.4°
C3	C2	O2	H16	180.0°	179.9°
C1	C2	C3	C4	55.1°	57.0°
C2	C1	C8	O5	121.4°	119.9°
C2	C1	C8	H11	119.2°	120.0°
C2	C1	C8	O32	131.8°	175.0°
C2	C1	O5	H11	118.1°	120.0°
C2	C1	O5	C5	49.6°	61.1°
C2	C1	C8	H1	106.9°	65.0°
C2	C1	C8	H7	10.4°	55.0°
C1	C2	C3	H3	64.8°	62.9°
C1	C2	O2	H16	56.5°	60.3°
C3	C4	O4	C5	122.2°	119.7°
C3	C4	O4	H4	118.8°	120.2°
C3	C4	C5	H4	120.3°	119.9°
C3	C4	C5	O5	59.6°	57.5°
C3	C4	C5	C6	177.0°	177.6°
C3	C4	C5	H5	57.9°	62.4°
C4	C3	C2	H2	172.9°	176.9°
C3	C4	O4	H14	180.0°	60.0°
C4	C3	O3	H15	55.7°	180.0°
O4	C4	C5	H4	119.6°	120.2°
O4	C4	C5	O5	179.8°	177.5°
O4	C4	C5	C6	56.8°	62.5°
O4	C4	C5	H5	62.3°	57.6°
O4	C4	C3	H3	63.5°	57.0°
C4	C5	O5	C1	53.8°	61.1°
C4	C5	O5	C6	126.0°	120.0°
C4	C5	O5	H5	116.5°	120.0°
C4	C5	C6	H5	118.9°	120.1°
C4	C5	C6	O6	168.3°	60.0°
C4	C5	C6	H6	49.9°	60.0°
C5	C4	O4	H14	57.8°	179.7°
C5	C4	C3	H3	58.6°	62.9°
C1	C8	O32	H1	121.3°	120.0°
C1	C8	O32	H7	121.4°	120.0°
C8	C1	O5	H11	122.0°	120.0°
C8	C1	O5	C5	169.5°	178.9°
C8	C1	C2	H2	74.2°	62.5°
C1	C8	H1	H7	115.7°	120.0°
C1	C8	O32	H17	180.0°	180.0°
O32	C8	C1	O5	106.8°	65.1°
O32	C8	C1	H11	12.6°	55.0°
O32	C8	H1	H7	115.7°	120.0°
C1	O5	C5	C6	179.8°	178.8°
C1	O5	C5	H5	62.7°	58.8°
O5	C1	C2	H2	165.6°	177.5°
O5	C1	C8	H1	14.5°	54.9°
O5	C1	C8	H7	131.8°	174.9°
O5	C5	C6	H5	118.3°	120.0°
O5	C5	C6	O6	69.0°	180.0°
O5	C5	C6	H6	172.6°	60.0°
O5	C5	C4	H4	60.6°	62.3°
C5	O5	C1	H11	68.5°	58.8°
C5	C6	O6	H6	117.3°	120.0°
C6	C5	C4	H4	62.8°	57.7°
C5	C6	C7	H8	68.5°	55.0°
C5	C6	C7	H9	50.7°	65.0°
C5	C6	O6	H13	55.0°	60.0°
O6	C6	C5	H5	49.3°	60.0°
O6	C6	C7	H8	53.0°	174.9°
O6	C6	C7	H9	172.2°	55.0°
H6	C6	C5	H5	69.1°	179.9°
H6	C6	C7	H8	172.0°	65.0°
H6	C6	C7	H9	68.8°	175.0°
H6	C6	O6	H13	62.3°	180.0°
H5	C5	C4	H4	178.2°	177.7°
H4	C4	O4	H14	61.2°	60.2°
H4	C4	C3	H3	178.1°	177.2°
H2	C2	C1	H11	47.5°	57.5°
H2	C2	C3	H3	53.0°	57.0°
H2	C2	O2	H16	61.0°	59.8°
H11	C1	C8	H1	133.9°	175.0°
H11	C1	C8	H7	108.8°	65.1°
H1	C8	O32	H17	58.7°	60.0°
H7	C8	O32	H17	58.6°	60.0°
H3	C3	O3	H15	62.2°	59.8°

Release date:	2026-10-14
Definition date:	2018-09-05
Last modified:	2026-10-09
Release status:	REL
Processing site:	RCSB
Derived from:	6MDK