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SummaryGeometryRelated PDB entries

JDP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O01C02doub1.22Å1.22Å
N31C02sing1.35Å1.36Å
C02C03sing1.47Å1.49Å
C09C08sing1.46Å1.44ÅAromatic
C09C10doub1.34Å1.34ÅAromatic
C03C08doub1.41Å1.40ÅAromatic
C03C04sing1.39Å1.39ÅAromatic
C08C07sing1.41Å1.41ÅAromatic
C11C10sing1.51Å1.50Å
C04C05doub1.38Å1.40ÅAromatic
C10N12sing1.37Å1.43ÅAromatic
C07N12sing1.38Å1.35ÅAromatic
C07C06doub1.39Å1.36ÅAromatic
N12C13sing1.39Å1.36Å
C05C06sing1.38Å1.37ÅAromatic
C13N30doub1.32Å1.32ÅAromatic
C13N14sing1.32Å1.32ÅAromatic
N30C29sing1.33Å1.32ÅAromatic
N14C15doub1.33Å1.32ÅAromatic
C29C28sing1.51Å1.49Å
C29C24doub1.37Å1.38ÅAromatic
C28C27sing1.53Å1.56Å
C15C24sing1.40Å1.41ÅAromatic
C15N16sing1.39Å1.36Å
C22C21doub1.38Å1.40ÅAromatic
C22C23sing1.38Å1.38ÅAromatic
C24C25sing1.50Å1.52Å
C21C20sing1.38Å1.40ÅAromatic
C23C18doub1.38Å1.40ÅAromatic
N16C17sing1.47Å1.44Å
C27O26sing1.43Å1.48Å
C20C19doub1.38Å1.40ÅAromatic
C18C19sing1.38Å1.38ÅAromatic
C18C17sing1.51Å1.49Å
C25O26sing1.43Å1.44Å
C22H1sing1.08Å1.08Å
C21H2sing1.08Å1.08Å
C04H3sing1.08Å1.08Å
C05H4sing1.08Å1.08Å
C06H5sing1.08Å1.08Å
C09H6sing1.08Å1.08Å
C11H7sing1.09Å1.10Å
C11H8sing1.09Å1.10Å
C11H9sing1.09Å1.10Å
N16H10sing0.97Å1.00Å
C17H11sing1.09Å1.10Å
C17H12sing1.09Å1.10Å
C19H13sing1.08Å1.08Å
C20H14sing1.08Å1.08Å
C23H15sing1.08Å1.08Å
C25H16sing1.09Å1.10Å
C25H17sing1.09Å1.10Å
C27H18sing1.09Å1.10Å
C27H19sing1.09Å1.10Å
C28H20sing1.09Å1.10Å
C28H21sing1.09Å1.10Å
N31H22sing0.97Å1.00Å
N31H23sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O01C02N31121.4°120.0°
O01C02C03121.5°120.0°
N31C02C03117.0°120.0°
C02N31H22120.0°120.0°
C02N31H23120.0°120.0°
C02C03C08122.7°120.4°
C02C03C04121.1°120.3°
C08C09C10106.5°107.1°
C09C08C03133.6°134.0°
C09C08C07107.3°106.2°
C08C09H6126.8°126.5°
C09C10C11125.3°125.1°
C09C10N12110.1°109.9°
C10C09H6126.7°126.4°
C08C03C04116.2°119.3°
C03C08C07119.1°119.9°
C03C04C05122.1°120.2°
C03C04H3119.0°119.9°
C08C07N12108.6°107.1°
C08C07C06125.1°119.5°
C11C10N12124.6°125.0°
C10C11H7109.5°109.5°
C10C11H8109.5°109.5°
C10C11H9109.5°109.4°
C04C05C06122.7°120.9°
C05C04H3119.0°119.9°
C04C05H4118.7°119.5°
C10N12C07107.5°109.7°
C10N12C13130.5°125.2°
N12C07C06126.3°133.3°
C07N12C13122.0°125.1°
C07C06C05114.9°120.3°
C07C06H5122.6°119.8°
N12C13N30118.0°119.2°
N12C13N14115.1°119.2°
C06C05H4118.7°119.6°
C05C06H5122.5°119.9°
N30C13N14126.8°121.7°
C13N30C29115.5°121.0°
C13N14C15117.8°120.5°
N30C29C28114.9°119.4°
N30C29C24123.5°119.2°
N14C15C24120.4°119.0°
N14C15N16115.3°120.5°
C28C29C24121.6°121.4°
C29C28C27112.8°109.7°
C29C28H20108.6°109.4°
C29C28H21108.6°109.4°
C29C24C15115.8°118.6°
C29C24C25122.5°121.8°
C28C27O26119.1°108.5°
C28C27H18107.0°109.7°
C28C27H19107.0°109.8°
C27C28H20108.6°109.4°
C27C28H21108.6°109.5°
C24C15N16124.0°120.5°
C15C24C25121.7°119.6°
C15N16C17131.5°120.0°
C15N16H10103.7°120.0°
C21C22C23119.8°120.0°
C22C21C20118.8°120.0°
C21C22H1120.1°120.0°
C22C21H2120.6°120.0°
C22C23C18120.4°120.0°
C23C22H1120.1°120.0°
C22C23H15119.8°120.0°
C24C25O26110.7°110.2°
C24C25H16109.2°109.3°
C24C25H17109.2°109.4°
C21C20C19122.0°120.0°
C20C21H2120.6°120.0°
C21C20H14119.0°120.0°
C23C18C19121.4°120.0°
C23C18C17118.2°120.0°
C18C23H15119.8°119.9°
N16C17C1899.4°109.5°
C17N16H10103.7°120.0°
N16C17H11111.9°109.4°
N16C17H12111.9°109.4°
C27O26C25115.3°113.2°
O26C27H18107.0°109.6°
O26C27H19107.0°109.6°
C20C19C18117.6°120.0°
C20C19H13121.2°120.0°
C19C20H14119.0°120.0°
C19C18C17120.4°120.0°
C18C19H13121.2°120.0°
C18C17H11111.9°109.5°
C18C17H12111.9°109.5°
O26C25H16109.2°109.4°
O26C25H17109.2°109.4°
H7C11H8109.4°109.5°
H7C11H9109.5°109.5°
H8C11H9109.5°109.4°
H11C17H12109.5°109.4°
H16C25H17109.5°109.2°
H18C27H19109.5°109.6°
H20C28H21109.5°109.4°
H22N31H23120.0°120.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O01C02N31C03177.1°180.0°
O01C02C03C085.1°0.0°
O01C02C03C04172.7°179.7°
O01C02N31H220.0°0.0°
O01C02N31H23180.0°180.0°
N31C02C03C08177.9°180.0°
N31C02C03C044.3°0.2°
C02N31H22H23180.0°179.9°
C02C03C08C091.5°0.0°
C02C03C08C04177.9°179.7°
C02C03C08C07179.3°179.7°
C02C03C04C05178.7°180.0°
C02C03C04H31.3°0.0°
C03C02N31H22177.0°180.0°
C03C02N31H233.0°0.1°
C08C09C10H6180.0°179.9°
C09C08C03C07179.2°179.7°
C09C08C03C04179.4°179.7°
C08C09C10C11179.6°179.9°
C08C09C10N120.5°0.5°
C09C08C07N120.7°0.2°
C09C08C07C06179.3°179.6°
C10C09C08C03179.4°180.0°
C10C09C08C070.1°0.2°
C09C10C11N12179.9°179.3°
C09C10N12C071.0°0.7°
C09C10N12C13178.5°179.9°
C09C10C11H790.1°89.9°
C09C10C11H8150.0°150.0°
C09C10C11H930.0°30.0°
C08C03C04C050.8°0.3°
C03C08C07N12179.9°179.7°
C03C08C07C061.3°0.6°
C08C03C04H3179.2°179.7°
C03C08C09H60.6°0.1°
C04C03C08C071.4°0.6°
C03C04C05H3180.0°180.0°
C03C04C05C060.1°0.0°
C03C04C05H4179.9°180.0°
C08C07N12C101.0°0.5°
C08C07N12C06178.6°179.7°
C08C07N12C13178.5°179.7°
C08C07C06C050.4°0.3°
C08C07C06H5179.6°179.7°
C07C08C09H6179.9°179.7°
C11C10N12C07179.1°179.9°
C11C10N12C131.4°0.7°
C11C10C09H60.4°0.0°
C10C11H7H8120.0°120.1°
C10C11H7H9120.0°120.0°
C10C11H8H9120.0°120.0°
C04C05C06C070.3°0.0°
C04C05C06H4180.0°180.0°
C04C05C06H5179.6°180.0°
C10N12C07C13179.5°179.2°
C10N12C07C06179.6°179.3°
C10N12C13N3043.8°0.9°
C10N12C13N14139.4°178.9°
N12C10C09H6179.5°179.4°
N12C10C11H790.0°89.4°
N12C10C11H829.9°30.7°
N12C10C11H9149.9°150.6°
N12C07C06C05178.7°180.0°
C07N12C13N30135.7°180.0°
C07N12C13N1441.2°0.3°
N12C07C06H51.3°0.0°
C06C07N12C130.1°0.0°
C07C06C05H5180.0°180.0°
C07C06C05H4179.6°180.0°
N12C13N30N14176.4°179.7°
N12C13N30C29179.9°179.7°
N12C13N14C15179.8°179.9°
C06C05C04H3179.9°180.0°
N30C13N14C153.3°0.4°
C13N30C29C28178.4°179.9°
C13N30C29C242.0°0.5°
N14C13N30C293.7°0.6°
C13N14C15C241.1°0.1°
C13N14C15N16173.7°180.0°
N30C29C28C24179.6°179.6°
N30C29C28C27166.8°163.4°
N30C29C24C150.2°0.2°
N30C29C24C25179.2°179.9°
N30C29C28H2072.8°43.3°
N30C29C28H2146.3°76.5°
N14C15C24C290.3°0.0°
N14C15C24N16174.3°179.9°
N14C15C24C25178.7°179.8°
N14C15N16C17124.8°0.1°
N14C15N16H10112.4°180.0°
C29C28C27H20120.5°120.0°
C29C28C27H21120.5°120.1°
C28C29C24C15179.8°179.8°
C28C29C24C251.2°0.5°
C29C28C27O265.8°49.1°
C29C28C27H18115.6°70.6°
C29C28C27H19127.1°168.9°
C29C28H20H21118.5°119.9°
C24C29C28C2713.7°17.0°
C29C24C15C25179.0°179.7°
C29C24C15N16174.6°179.9°
C29C24C25O2630.8°15.9°
C29C24C25H16151.0°104.3°
C29C24C25H1789.4°136.1°
C24C29C28H20106.8°137.1°
C24C29C28H21134.1°103.1°
C28C27O26H18121.3°119.7°
C28C27O26H19121.4°119.9°
C28C27O26C2538.7°70.4°
C28C27H18H19115.7°120.6°
C27C28H20H21118.5°119.9°
C24C15N16C1760.7°180.0°
C15C24C25O26148.1°164.4°
C24C15N16H1062.1°0.1°
C15C24C25H1627.9°75.4°
C15C24C25H1791.7°44.1°
N16C15C24C254.5°0.4°
C15N16C17H10122.8°179.9°
C15N16C17C1883.1°180.0°
C15N16C17H1135.2°59.9°
C15N16C17H12158.6°60.0°
C21C22C23H1180.0°179.6°
C22C21C20H2180.0°179.9°
C21C22C23C180.9°0.1°
C22C21C20C190.0°0.1°
C22C21C20H14180.0°179.9°
C21C22C23H15179.1°180.0°
C23C22C21C200.1°0.1°
C22C23C18H15180.0°179.9°
C22C23C18C192.0°0.1°
C22C23C18C17179.8°180.0°
C23C22C21H2179.9°180.0°
C24C25O26C2749.0°51.4°
C24C25O26H16120.2°120.2°
C24C25O26H17120.2°120.2°
C24C25H16H17119.5°119.6°
C21C20C19H14180.0°179.9°
C21C20C19C181.1°0.1°
C20C21C22H1179.9°179.7°
C21C20C19H13178.9°179.9°
C23C18C17N1662.5°89.9°
C23C18C19C202.0°0.1°
C23C18C19C17177.7°179.9°
C18C23C22H1179.1°179.7°
C23C18C17H1155.9°150.1°
C23C18C17H12179.1°30.1°
C23C18C19H13178.0°179.9°
N16C17C18C19115.3°90.0°
N16C17C18H11118.3°120.0°
N16C17C18H12118.4°120.0°
N16C17H11H12124.7°119.9°
C27O26C25H16169.1°68.7°
C27O26C25H1771.2°171.7°
O26C27H18H19115.6°120.3°
O26C27C28H20126.2°169.2°
O26C27C28H21114.7°70.9°
C20C19C18H13180.0°180.0°
C20C19C18C17179.8°180.0°
C19C20C21H2180.0°180.0°
C19C18C17H11126.3°30.0°
C19C18C17H123.0°150.0°
C18C19C20H14178.9°179.9°
C19C18C23H15178.0°180.0°
C18C17N16H10154.1°0.0°
C18C17H11H12124.7°120.0°
C17C18C19H130.2°0.0°
C17C18C23H150.2°0.1°
O26C25H16H17119.5°119.7°
C25O26C27H1882.7°49.3°
C25O26C27H19160.0°169.6°
H1C22C21H20.1°0.4°
H1C22C23H150.9°0.4°
H2C21C20H140.1°0.1°
H3C04C05H40.1°0.0°
H4C05C06H50.4°0.0°
H7C11H8H9120.0°119.9°
H10N16C17H1187.5°120.0°
H10N16C17H1235.8°120.0°
H13C19C20H141.1°0.1°
H18C27C28H204.9°49.5°
H18C27C28H21123.9°169.4°
H19C27C28H20112.4°71.0°
H19C27C28H216.7°48.8°

223166

PDB entries from 2024-07-31

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