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SummaryGeometryRelated PDB entries

JDK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C23C22sing1.53Å1.54Å
C23C24sing1.53Å1.42Å
C22N21sing1.47Å1.42Å
C24C25sing1.53Å1.43Å
N21C20sing1.47Å1.25Å
N21C26sing1.47Å1.45Å
C20C19sing1.51Å1.54Å
C25C26sing1.53Å1.52Å
C19C18doub1.38Å1.44ÅAromatic
C19C27sing1.38Å1.40ÅAromatic
C18C17sing1.38Å1.36ÅAromatic
C17C16doub1.38Å1.48ÅAromatic
C27C28doub1.38Å1.43ÅAromatic
C28C16sing1.38Å1.36ÅAromatic
C16C15sing1.51Å1.53Å
C13C12doub1.34Å1.44ÅAromatic
C13N14sing1.37Å1.29ÅAromatic
C12C09sing1.46Å1.39ÅAromatic
N14C15sing1.47Å1.48Å
N14C08sing1.38Å1.39ÅAromatic
C09C08doub1.41Å1.39ÅAromatic
C09C10sing1.40Å1.43ÅAromatic
C08C07sing1.39Å1.42ÅAromatic
C10C11doub1.36Å1.41ÅAromatic
C07C06doub1.39Å1.40ÅAromatic
C11C06sing1.40Å1.42ÅAromatic
C06C05sing1.48Å1.47Å
C29C05sing1.41Å1.42ÅAromatic
C29C02doub1.36Å1.41ÅAromatic
C05N04doub1.32Å1.33ÅAromatic
C02N01sing1.39Å1.44Å
C02N03sing1.36Å1.38ÅAromatic
N04N03sing1.40Å1.40ÅAromatic
C10H1sing1.08Å1.08Å
C13H2sing1.08Å1.08Å
C15H3sing1.09Å1.10Å
C15H4sing1.09Å1.10Å
C17H5sing1.08Å1.08Å
C20H6sing1.09Å1.10Å
C20H7sing1.09Å1.10Å
C22H8sing1.09Å1.10Å
C22H9sing1.09Å1.10Å
C24H10sing1.09Å1.10Å
C24H11sing1.09Å1.10Å
C26H12sing1.09Å1.10Å
C26H13sing1.09Å1.10Å
C28H14sing1.08Å1.08Å
N01H15sing0.97Å1.00Å
N01H16sing0.97Å1.00Å
N03H17sing0.97Å1.00Å
C07H18sing1.08Å1.08Å
C11H19sing1.08Å1.08Å
C12H20sing1.08Å1.08Å
C18H21sing1.08Å1.08Å
C23H23sing1.09Å1.10Å
C23H24sing1.09Å1.10Å
C25H25sing1.09Å1.10Å
C25H26sing1.09Å1.10Å
C27H27sing1.08Å1.08Å
C29H28sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C22C23C24113.2°109.3°
C23C22N21118.0°109.5°
C23C22H8107.3°109.5°
C23C22H9107.3°109.4°
C22C23H23108.5°109.5°
C22C23H24108.5°109.5°
C23C24C25108.6°109.1°
C23C24H10109.7°109.5°
C23C24H11109.7°109.6°
C24C23H23108.5°109.5°
C24C23H24108.5°109.5°
C22N21C20110.2°111.0°
C22N21C26118.2°111.2°
N21C22H8107.3°109.5°
N21C22H9107.3°109.5°
C24C25C26112.5°109.3°
C25C24H10109.7°109.5°
C25C24H11109.7°109.5°
C24C25H25108.7°109.5°
C24C25H26108.7°109.5°
C20N21C26114.4°111.0°
N21C20C19114.4°109.5°
N21C20H6108.2°109.4°
N21C20H7108.2°109.5°
N21C26C25117.8°109.5°
N21C26H12107.4°109.5°
N21C26H13107.4°109.5°
C20C19C18121.7°120.0°
C20C19C27118.9°120.0°
C19C20H6108.2°109.5°
C19C20H7108.2°109.5°
C25C26H12107.3°109.4°
C25C26H13107.4°109.5°
C26C25H25108.7°109.5°
C26C25H26108.7°109.5°
C18C19C27119.4°120.0°
C19C18C17120.1°120.0°
C19C18H21119.9°120.0°
C19C27C28120.4°120.0°
C19C27H27119.8°120.0°
C18C17C16120.0°120.0°
C18C17H5120.0°120.0°
C17C18H21120.0°120.0°
C17C16C28119.8°119.9°
C17C16C15123.5°120.0°
C16C17H5120.0°120.0°
C27C28C16120.3°120.1°
C27C28H14119.9°120.0°
C28C27H27119.8°120.1°
C28C16C15116.8°120.0°
C16C28H14119.8°120.0°
C16C15N14115.5°109.5°
C16C15H3108.0°109.5°
C16C15H4108.0°109.5°
C12C13N14107.8°110.0°
C13C12C09108.0°107.0°
C12C13H2126.1°125.0°
C13C12H20126.0°126.5°
C13N14C15126.1°125.1°
C13N14C08109.9°109.8°
N14C13H2126.1°125.0°
C12C09C08104.8°106.0°
C12C09C10133.4°133.9°
C09C12H20126.0°126.5°
C15N14C08124.0°125.1°
N14C15H3107.9°109.4°
N14C15H4108.0°109.5°
N14C08C09109.4°107.2°
N14C08C07130.1°133.4°
C08C09C10121.7°120.2°
C09C08C07120.5°119.4°
C09C10C11118.6°119.9°
C09C10H1120.7°120.0°
C08C07C06117.4°119.7°
C08C07H18121.3°120.1°
C10C11C06118.5°120.4°
C11C10H1120.7°120.1°
C10C11H19120.8°119.8°
C07C06C11123.2°120.4°
C07C06C05116.4°119.8°
C06C07H18121.3°120.2°
C11C06C05120.2°119.8°
C06C11H19120.7°119.8°
C06C05C29125.5°125.9°
C06C05N04124.6°125.9°
C05C29C02105.7°107.8°
C29C05N04109.4°108.1°
C05C29H28127.1°126.1°
C29C02N01127.5°126.2°
C29C02N03107.5°107.7°
C02C29H28127.1°126.2°
C05N04N03108.9°108.3°
N01C02N03124.9°126.1°
C02N01H15109.5°120.1°
C02N01H16109.5°120.0°
C02N03N04108.4°108.0°
C02N03H17125.8°126.0°
N04N03H17125.8°126.0°
H3C15H4109.5°109.5°
H6C20H7109.5°109.5°
H8C22H9109.5°109.5°
H10C24H11109.5°109.6°
H12C26H13109.5°109.5°
H15N01H16109.5°119.9°
H23C23H24109.5°109.5°
H25C25H26109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C22C23C24H23120.5°119.9°
C22C23C24H24120.6°120.0°
C23C22N21H8121.2°120.0°
C23C22N21H9121.2°120.0°
C22C23C24C2559.8°57.7°
C23C22N21C20139.5°174.1°
C23C22N21C265.4°61.8°
C23C22H8H9116.2°120.0°
C22C23C24H10179.6°62.2°
C22C23C24H1160.1°177.6°
C22C23H23H24118.3°120.1°
C24C23C22N2126.6°59.2°
C23C24C25H10119.9°119.8°
C23C24C25H11119.9°120.0°
C23C24C25C2661.2°57.7°
C24C23C22H894.6°60.8°
C24C23C22H9147.9°179.2°
C23C24H10H11120.4°120.2°
C24C23H23H24118.3°120.1°
C23C24C25H2559.3°177.6°
C23C24C25H26178.3°62.3°
C22N21C20C26136.1°124.2°
C22N21C20C19171.0°170.0°
C22N21C26C253.8°61.8°
C22N21C20H650.3°70.0°
C22N21C20H768.2°50.0°
N21C22H8H9116.1°120.0°
C22N21C26H12124.9°178.2°
C22N21C26H13117.4°58.2°
N21C22C23H2393.9°179.1°
N21C22C23H24147.2°60.8°
C24C25C26N2129.8°59.2°
C24C25C26H25120.5°120.0°
C24C25C26H26120.4°120.0°
C25C24H10H11120.4°120.2°
C24C25C26H1291.4°179.2°
C24C25C26H13151.0°60.8°
C25C24C23H2360.8°177.6°
C25C24C23H24179.7°62.3°
C24C25H25H26118.6°120.1°
N21C20C19H6120.7°120.0°
N21C20C19H7120.7°120.0°
C20N21C26C25136.1°174.1°
N21C20C19C1869.4°90.0°
N21C20C19C27111.3°90.0°
N21C20H6H7117.8°120.0°
C20N21C22H899.2°65.9°
C20N21C22H918.3°54.2°
C20N21C26H12102.7°54.2°
C20N21C26H1314.9°65.9°
C26N21C20C1952.9°65.8°
N21C26C25H12121.2°120.0°
N21C26C25H13121.2°120.0°
C26N21C20H6173.6°54.2°
C26N21C20H767.9°174.2°
C26N21C22H8126.6°58.2°
C26N21C22H9115.9°178.2°
N21C26H12H13116.2°120.0°
N21C26C25H2590.7°179.2°
N21C26C25H26150.2°60.8°
C20C19C18C27179.2°180.0°
C20C19C18C17179.9°180.0°
C20C19C27C28179.8°179.7°
C19C20H6H7117.7°120.0°
C20C19C18H210.1°0.0°
C20C19C27H270.2°0.0°
C26C25C24H10178.9°62.2°
C26C25C24H1158.7°177.6°
C25C26H12H13116.2°120.0°
C26C25H25H26118.6°120.1°
C19C18C17H21180.0°180.0°
C19C18C17C160.2°0.0°
C18C19C27C280.9°0.3°
C19C18C17H5179.8°179.7°
C18C19C20H651.3°150.0°
C18C19C20H7169.8°30.0°
C18C19C27H27179.0°180.0°
C27C19C18C170.7°0.0°
C19C27C28H27180.0°179.7°
C19C27C28C160.2°0.6°
C27C19C20H6127.9°30.0°
C27C19C20H79.4°150.0°
C19C27C28H14179.8°179.9°
C27C19C18H21179.3°180.0°
C18C17C16H5180.0°179.7°
C18C17C16C280.9°0.3°
C18C17C16C15179.8°179.8°
C17C16C28C270.7°0.6°
C17C16C28C15178.9°179.9°
C17C16C15N1412.3°90.0°
C17C16C15H3133.1°29.9°
C17C16C15H4108.6°150.0°
C17C16C28H14179.3°179.9°
C16C17C18H21179.8°180.0°
C27C28C16H14180.0°179.4°
C27C28C16C15179.6°179.5°
C28C16C15N14166.6°90.1°
C28C16C15H345.7°150.0°
C28C16C15H472.5°29.9°
C28C16C17H5179.0°180.0°
C16C28C27H27179.8°179.7°
C16C15N14C1388.8°95.0°
C16C15N14H3120.9°120.0°
C16C15N14H4120.9°120.0°
C16C15N14C0892.8°84.9°
C16C15H3H4117.3°120.0°
C15C16C17H50.2°0.1°
C15C16C28H140.4°0.0°
C12C13N14H2180.0°179.9°
C13C12C09H20180.0°180.0°
C12C13N14C15179.4°179.9°
C12C13N14C080.8°0.0°
C13C12C09C081.0°0.0°
C13C12C09C10179.9°180.0°
N14C13C12C091.2°0.0°
C13N14C15C08178.4°180.0°
C13N14C08C090.2°0.0°
C13N14C08C07179.8°179.3°
C13N14C15H332.1°25.0°
C13N14C15H4150.3°145.0°
N14C13C12H20178.8°180.0°
C12C09C08N140.6°0.0°
C12C09C08C10179.2°179.9°
C12C09C08C07179.5°179.4°
C12C09C10C11179.2°180.0°
C12C09C10H10.8°0.4°
C09C12C13H2178.8°180.0°
C15N14C08C09178.8°180.0°
C15N14C08C071.1°0.6°
C15N14C13H20.5°0.0°
N14C15H3H4117.3°120.0°
N14C08C09C07180.0°179.4°
N14C08C09C10179.7°180.0°
N14C08C07C06179.0°179.9°
C08N14C13H2179.2°179.9°
C08N14C15H3146.3°155.1°
C08N14C15H428.1°35.1°
N14C08C07H181.0°0.5°
C08C09C10C110.3°0.1°
C09C08C07C061.0°0.8°
C08C09C10H1179.7°179.7°
C09C08C07H18179.0°179.7°
C08C09C12H20179.0°180.0°
C10C09C08C070.3°0.5°
C09C10C11H1180.0°179.6°
C09C10C11C061.0°0.3°
C09C10C11H19179.0°179.7°
C10C09C12H200.0°0.1°
C08C07C06H18180.0°179.4°
C08C07C06C112.3°0.6°
C08C07C06C05176.5°179.5°
C10C11C06C072.4°0.0°
C10C11C06H19180.0°180.0°
C10C11C06C05176.3°179.9°
C07C06C11C05173.9°180.0°
C07C06C05C29161.0°179.7°
C07C06C05N0410.0°0.0°
C07C06C11H19177.6°180.0°
C11C06C05C2913.3°0.3°
C11C06C05N04175.7°179.9°
C06C11C10H1179.0°180.0°
C11C06C07H18177.6°180.0°
C06C05C29N04172.1°179.7°
C06C05C29C02175.5°179.9°
C06C05N04N03175.2°180.0°
C05C06C07H183.5°0.0°
C05C06C11H193.7°0.0°
C06C05C29H284.6°0.3°
C05C29C02H28180.0°179.6°
C05C29C02N01178.1°179.8°
C05C29C02N032.4°0.4°
C29C05N04N033.0°0.3°
C02C29C05N043.3°0.4°
C29C02N01N03179.5°179.8°
C29C02N03N040.7°0.2°
C29C02N01H15180.0°179.8°
C29C02N01H1660.0°0.2°
C29C02N03H17179.3°179.8°
C05N04N03C021.4°0.0°
C05N04N03H17178.6°179.9°
N04C05C29H28176.7°180.0°
N01C02N03N04179.7°179.9°
C02N01H15H16120.0°180.0°
N01C02N03H170.3°0.0°
N01C02C29H281.9°0.2°
C02N03N04H17180.0°179.9°
N03C02N01H150.6°0.0°
N03C02N01H16119.4°180.0°
N03C02C29H28177.6°180.0°
H1C10C11H191.0°0.0°
H2C13C12H201.2°0.1°
H5C17C18H210.2°0.3°
H8C22C23H23144.9°59.1°
H8C22C23H2426.0°179.2°
H9C22C23H2327.3°60.9°
H9C22C23H2491.6°59.2°
H10C24C23H2359.1°57.7°
H10C24C23H2459.8°177.8°
H10C24C25H2560.6°57.8°
H10C24C25H2658.5°177.9°
H11C24C23H23179.3°62.5°
H11C24C23H2460.4°57.6°
H11C24C25H25179.2°62.4°
H11C24C25H2661.8°57.6°
H12C26C25H25148.1°60.8°
H12C26C25H2629.0°59.2°
H13C26C25H2530.5°59.2°
H13C26C25H2688.6°179.2°
H14C28C27H270.2°0.3°

222624

PDB entries from 2024-07-17

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