Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

JDC

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C3BC3Asing1.53Å1.48Å
C3AC3Dsing1.53Å1.58Å
C3AC2Asing1.53Å1.54Å
C4DC2Asing1.53Å1.52Å
C4DN11sing1.47Å1.54Å
C2AN2Asing1.47Å1.42Å
N2AC1Asing1.35Å1.45Å
C61N11sing1.47Å1.45Å
C61C51sing1.53Å1.49Å
N11C21sing1.47Å1.45Å
C1AC3sing1.51Å1.52Å
C1AO1doub1.21Å1.24Å
C3C4sing1.53Å1.52Å
C3N2sing1.47Å1.42Å
C4C4Asing1.51Å1.51Å
C5C4Adoub1.39Å1.45ÅAromatic
C5C6sing1.38Å1.42ÅAromatic
C4AC8Asing1.38Å1.33ÅAromatic
C21C31sing1.53Å1.48Å
C6C7doub1.39Å1.39ÅAromatic
C51C41sing1.53Å1.44Å
C8AC1sing1.51Å1.47Å
C8AC8doub1.39Å1.46ÅAromatic
N2C1sing1.47Å1.41Å
C7C8sing1.39Å1.39ÅAromatic
C7O7sing1.36Å1.35Å
C4EC41sing1.53Å1.52Å
C41C31sing1.53Å1.46Å
C41C1Csing1.51Å1.53Å
C31C34sing1.53Å1.58Å
C1CC6Cdoub1.38Å1.43ÅAromatic
C1CC2Csing1.38Å1.40ÅAromatic
C6CC5Csing1.38Å1.41ÅAromatic
C2CC3Cdoub1.39Å1.41ÅAromatic
C5CC4Cdoub1.38Å1.39ÅAromatic
C3CC4Csing1.39Å1.44ÅAromatic
C3CO3Csing1.36Å1.45Å
C1H1sing1.09Å1.10Å
C1H2sing1.09Å1.10Å
N2H3sing1.01Å1.00Å
C3H5sing1.09Å1.10Å
C4H6sing1.09Å1.10Å
C4H7sing1.09Å1.10Å
C5H8sing1.08Å1.08Å
C6H9sing1.08Å1.08Å
O7H10sing0.97Å0.95Å
C8H11sing1.08Å1.08Å
N2AH12sing0.97Å1.00Å
C2AH13sing1.09Å1.10Å
C3AH14sing1.09Å1.10Å
C3DH15sing1.09Å1.10Å
C3DH16sing1.09Å1.10Å
C3DH17sing1.09Å1.10Å
C3BH18sing1.09Å1.10Å
C3BH19sing1.09Å1.10Å
C3BH20sing1.09Å1.10Å
C4DH21sing1.09Å1.10Å
C4DH22sing1.09Å1.10Å
C21H24sing1.09Å1.10Å
C21H25sing1.09Å1.10Å
C31H26sing1.09Å1.10Å
C34H27sing1.09Å1.10Å
C34H28sing1.09Å1.10Å
C34H29sing1.09Å1.10Å
C51H30sing1.09Å1.10Å
C51H31sing1.09Å1.10Å
C61H32sing1.09Å1.10Å
C61H33sing1.09Å1.10Å
C4EH34sing1.09Å1.10Å
C4EH35sing1.09Å1.10Å
C4EH36sing1.09Å1.10Å
C2CH37sing1.08Å1.08Å
O3CH38sing0.97Å0.95Å
C4CH39sing1.08Å1.08Å
C5CH40sing1.08Å1.08Å
C6CH41sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C3BC3AC3D113.4°109.5°
C3BC3AC2A115.5°109.5°
C3BC3AH14105.5°109.5°
C3AC3BH18109.5°109.5°
C3AC3BH19109.5°109.5°
C3AC3BH20109.4°109.5°
C3DC3AC2A111.9°109.5°
C3DC3AH14104.4°109.4°
C3AC3DH15109.5°109.5°
C3AC3DH16109.5°109.5°
C3AC3DH17109.5°109.5°
C3AC2AC4D111.8°109.5°
C3AC2AN2A104.4°109.5°
C3AC2AH13108.5°109.5°
C2AC3AH14104.9°109.5°
C2AC4DN11117.4°109.5°
C4DC2AN2A113.2°109.5°
C4DC2AH13108.7°109.5°
C2AC4DH21107.4°109.5°
C2AC4DH22107.4°109.5°
C4DN11C61123.4°111.0°
C4DN11C21113.2°111.0°
N11C4DH21107.5°109.4°
N11C4DH22107.5°109.4°
C2AN2AC1A120.1°120.0°
C2AN2AH12120.0°120.0°
N2AC2AH13110.0°109.5°
N2AC1AC3118.9°120.0°
N2AC1AO1120.8°120.0°
C1AN2AH12120.0°120.0°
N11C61C51113.6°109.5°
C61N11C21112.9°111.2°
N11C61H32108.4°109.4°
N11C61H33108.5°109.5°
C61C51C41113.0°109.3°
C61C51H30108.6°109.4°
C61C51H31108.6°109.5°
C51C61H32108.4°109.4°
C51C61H33108.4°109.5°
N11C21C31113.3°109.5°
N11C21H24108.5°109.5°
N11C21H25108.5°109.5°
C3C1AO1120.3°120.0°
C1AC3C4111.9°109.6°
C1AC3N2109.2°109.6°
C1AC3H5108.1°109.8°
C4C3N2110.2°108.5°
C3C4C4A110.8°110.0°
C4C3H5108.1°109.7°
C3C4H6109.1°109.4°
C3C4H7109.1°109.4°
C3N2C1111.1°110.2°
C3N2H3109.1°111.1°
N2C3H5109.4°109.7°
C4C4AC5120.6°118.5°
C4C4AC8A120.4°121.5°
C4AC4H6109.1°109.4°
C4AC4H7109.1°109.4°
C4AC5C6120.1°120.5°
C5C4AC8A119.0°120.0°
C4AC5H8119.9°119.8°
C5C6C7120.2°119.8°
C6C5H8119.9°119.8°
C5C6H9119.9°120.1°
C4AC8AC1122.0°122.1°
C4AC8AC8121.0°119.8°
C21C31C41113.2°109.3°
C21C31C34107.8°109.5°
C31C21H24108.5°109.5°
C31C21H25108.5°109.5°
C21C31H26108.6°109.5°
C6C7C8119.5°119.8°
C6C7O7120.8°120.1°
C7C6H9119.9°120.1°
C51C41C4E104.4°109.6°
C51C41C31112.2°109.1°
C51C41C1C114.5°109.5°
C41C51H30108.6°109.5°
C41C51H31108.5°109.5°
C1C8AC8117.0°118.2°
C8AC1N2114.0°110.3°
C8AC1H1108.3°109.3°
C8AC1H2108.3°109.3°
C8AC8C7120.2°120.2°
C8AC8H11119.9°119.9°
N2C1H1108.3°109.3°
N2C1H2108.3°109.3°
C1N2H3109.1°111.0°
C8C7O7119.6°120.1°
C7C8H11119.9°119.8°
C7O7H10109.5°114.0°
C4EC41C31108.6°109.5°
C4EC41C1C106.1°109.6°
C41C4EH34109.5°109.5°
C41C4EH35109.5°109.5°
C41C4EH36109.5°109.5°
C31C41C1C110.6°109.5°
C41C31C34110.7°109.5°
C41C31H26108.9°109.5°
C41C1CC6C120.4°120.0°
C41C1CC2C119.6°120.0°
C34C31H26107.4°109.5°
C31C34H27109.5°109.5°
C31C34H28109.5°109.5°
C31C34H29109.5°109.5°
C6CC1CC2C120.1°120.1°
C1CC6CC5C119.9°120.1°
C1CC6CH41120.0°120.0°
C1CC2CC3C119.8°120.0°
C1CC2CH37120.1°120.1°
C6CC5CC4C120.2°120.0°
C6CC5CH40119.9°120.0°
C5CC6CH41120.1°119.9°
C2CC3CC4C119.9°119.8°
C2CC3CO3C119.6°120.1°
C3CC2CH37120.1°120.0°
C5CC4CC3C120.1°120.0°
C5CC4CH39119.9°120.0°
C4CC5CH40119.9°120.0°
C4CC3CO3C120.5°120.0°
C3CC4CH39120.0°120.0°
C3CO3CH38109.5°114.0°
H1C1H2109.5°109.3°
H6C4H7109.5°109.3°
H15C3DH16109.4°109.5°
H15C3DH17109.5°109.5°
H16C3DH17109.5°109.4°
H18C3BH19109.5°109.5°
H18C3BH20109.5°109.5°
H19C3BH20109.5°109.5°
H21C4DH22109.5°109.5°
H24C21H25109.5°109.4°
H27C34H28109.5°109.4°
H27C34H29109.5°109.5°
H28C34H29109.5°109.5°
H30C51H31109.5°109.5°
H32C61H33109.5°109.5°
H34C4EH35109.5°109.4°
H34C4EH36109.5°109.5°
H35C4EH36109.4°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C3BC3AC3DC2A132.8°120.0°
C3BC3AC3DH14114.3°120.0°
C3BC3AC2AH14115.6°120.0°
C3BC3AC2AC4D48.1°180.0°
C3BC3AC2AN2A170.9°60.0°
C3BC3AC2AH1371.9°60.0°
C3BC3AC3DH15180.0°60.0°
C3BC3AC3DH1660.0°60.0°
C3BC3AC3DH1760.0°180.0°
C3AC3BH18H19120.0°120.0°
C3AC3BH18H20120.0°120.0°
C3AC3BH19H20120.0°120.0°
C3DC3AC2AH14112.6°120.0°
C3DC3AC2AC4D179.8°60.0°
C3DC3AC2AN2A57.4°180.0°
C3DC3AC2AH1359.9°60.0°
C3AC3DH15H16120.0°120.1°
C3AC3DH15H17120.0°120.0°
C3AC3DH16H17120.0°120.0°
C3DC3AC3BH18180.0°60.0°
C3DC3AC3BH1960.0°180.0°
C3DC3AC3BH2060.0°60.0°
C3AC2AC4DN2A117.6°120.0°
C3AC2AC4DH13119.8°120.0°
C3AC2AC4DN11172.0°175.4°
C3AC2AN2AH13116.2°120.0°
C3AC2AN2AC1A125.6°100.9°
C3AC2AN2AH1254.4°79.1°
C2AC3AC3DH1547.2°60.0°
C2AC3AC3DH16167.2°180.0°
C2AC3AC3DH1772.8°60.0°
C2AC3AC3BH1849.0°60.0°
C2AC3AC3BH1971.0°60.0°
C2AC3AC3BH20169.0°180.0°
C3AC2AC4DH2150.9°64.7°
C3AC2AC4DH2266.8°55.4°
C2AC4DN11H21121.1°120.0°
C2AC4DN11H22121.1°120.0°
C4DC2AN2AH13121.9°120.0°
C4DC2AN2AC1A112.5°139.1°
C2AC4DN11C61158.0°160.2°
C2AC4DN11C2159.8°75.6°
C4DC2AN2AH1267.5°40.9°
C4DC2AC3AH1467.5°60.0°
C2AC4DH21H22116.4°120.1°
N11C4DC2AN2A70.4°55.4°
C4DN11C61C21142.3°124.1°
C4DN11C61C51168.8°174.2°
C4DN11C21C31164.9°174.2°
N11C4DC2AH1352.3°64.6°
N11C4DH21H22116.4°120.0°
C4DN11C21H2444.4°54.1°
C4DN11C21H2574.5°65.8°
C4DN11C61H3270.6°65.8°
C4DN11C61H3348.2°54.1°
C2AN2AC1AH12180.0°180.0°
C2AN2AC1AC3179.9°180.0°
C2AN2AC1AO10.5°0.0°
N2AC2AC3AH1455.3°60.0°
N2AC2AC4DH21168.5°175.3°
N2AC2AC4DH2250.8°64.6°
N2AC1AC3O1179.4°180.0°
N2AC1AC3C4110.1°80.0°
N2AC1AC3N2127.6°161.0°
N2AC1AC3H58.7°40.5°
C1AN2AC2AH139.4°19.1°
N11C61C51H32120.6°120.0°
N11C61C51H33120.6°120.0°
C61N11C21C3148.8°61.8°
N11C61C51C4150.4°59.2°
C61N11C4DH2180.8°79.8°
C61N11C4DH2236.9°40.3°
C61N11C21H24169.4°178.2°
C61N11C21H2571.7°58.3°
N11C61C51H30170.9°60.8°
N11C61C51H3170.1°179.2°
N11C61H32H33118.2°120.0°
C51C61N11C2148.9°61.7°
C61C51C41H30120.5°119.9°
C61C51C41H31120.5°120.0°
C61C51C41C4E66.6°62.2°
C61C51C41C3150.8°57.6°
C61C51C41C1C177.8°177.5°
C61C51H30H31118.4°120.1°
C51C61H32H33118.1°120.0°
N11C21C31H24120.6°120.0°
N11C21C31H25120.6°120.0°
N11C21C31C4150.0°59.2°
N11C21C31C3472.8°60.7°
C21N11C4DH2161.4°44.4°
C21N11C4DH22179.1°164.5°
N11C21H24H25118.3°120.0°
N11C21C31H26171.1°179.2°
C21N11C61H3271.7°58.2°
C21N11C61H33169.5°178.2°
C1AC3C4N2121.7°119.7°
C1AC3C4H5118.9°120.6°
C1AC3N2H5118.1°120.6°
C1AC3C4C4A169.1°170.1°
C1AC3N2C1171.2°168.9°
C1AC3N2H368.6°67.6°
C1AC3C4H670.7°69.7°
C1AC3C4H748.9°49.9°
C3C1AN2AH120.1°0.0°
O1C1AC3C470.4°100.0°
O1C1AC3N251.8°19.0°
O1C1AC3H5170.7°139.5°
O1C1AN2AH12179.5°180.0°
C4C3N2H5118.7°119.7°
C3C4C4AH6120.2°120.2°
C3C4C4AH7120.2°120.1°
C3C4C4AC5164.2°163.2°
C3C4C4AC8A15.5°17.0°
C4C3N2C165.6°71.4°
C4C3N2H354.7°52.1°
C3C4H6H7119.4°119.7°
N2C3C4C4A47.4°50.4°
C3N2C1C8A48.9°52.7°
C3N2C1H3120.3°123.5°
C3N2C1H171.8°172.9°
C3N2C1H2169.5°67.5°
N2C3C4H6167.6°170.6°
N2C3C4H772.8°69.7°
C4C4AC5C8A179.7°179.8°
C4C4AC5C6179.7°179.9°
C4C4AC8AC10.1°0.6°
C4C4AC8AC8179.6°180.0°
C4AC4C3H572.1°69.3°
C4AC4H6H7119.4°119.7°
C4C4AC5H80.3°0.1°
C4AC5C6H8180.0°180.0°
C4AC5C6C70.0°0.1°
C5C4AC8AC1179.8°179.6°
C5C4AC8AC80.1°0.2°
C5C4AC4H644.0°43.1°
C5C4AC4H775.6°76.6°
C4AC5C6H9180.0°179.9°
C6C5C4AC8A0.0°0.1°
C5C6C7H9180.0°180.0°
C5C6C7C80.2°0.1°
C5C6C7O7180.0°179.9°
C4AC8AC1C8179.7°179.4°
C4AC8AC1N215.8°17.8°
C4AC8AC8C70.3°0.2°
C4AC8AC1H1104.8°138.0°
C4AC8AC1H2136.4°102.4°
C8AC4AC4H6135.7°137.2°
C8AC4AC4H7104.7°103.2°
C8AC4AC5H8180.0°179.9°
C4AC8AC8H11179.7°179.9°
C21C31C41C5150.9°57.6°
C21C31C41C4E63.9°62.3°
C21C31C41C34121.2°119.9°
C21C31C41H26120.9°120.0°
C21C31C41C1C180.0°177.5°
C21C31C34H26116.9°120.1°
C31C21H24H25118.2°120.0°
C21C31C34H27180.0°55.6°
C21C31C34H2860.0°175.6°
C21C31C34H2960.0°64.4°
C6C7C8C8A0.3°0.1°
C6C7C8O7179.8°180.0°
C7C6C5H8180.0°179.9°
C6C7O7H10180.0°90.0°
C6C7C8H11179.7°180.0°
C51C41C4EC31119.9°119.7°
C51C41C4EC1C121.3°120.2°
C51C41C31C1C129.1°119.9°
C51C41C31C3470.2°62.3°
C51C41C1CC6C6.3°4.0°
C51C41C1CC2C174.0°175.7°
C51C41C31H26171.8°177.6°
C41C51H30H31118.3°120.1°
C41C51C61H3270.2°60.8°
C41C51C61H33171.0°179.2°
C51C41C4EH34180.0°59.7°
C51C41C4EH3560.0°60.3°
C51C41C4EH3660.0°179.8°
C8AC1N2H1120.7°120.2°
C8AC1N2H2120.6°120.2°
C1C8AC8C7180.0°179.6°
C8AC1H1H2118.0°119.6°
C8AC1N2H371.4°70.8°
C1C8AC8H110.0°0.5°
C8C8AC1N2164.5°162.8°
C8AC8C7H11180.0°179.9°
C8AC8C7O7179.9°179.9°
C8C8AC1H174.9°42.6°
C8C8AC1H243.8°77.0°
N2C1H1H2117.9°119.6°
C1N2C3H553.1°48.4°
C8C7C6H9179.8°179.9°
C8C7O7H100.2°90.0°
O7C7C6H90.0°0.1°
O7C7C8H110.1°0.0°
C4EC41C31C1C116.0°120.2°
C4EC41C31C34174.9°177.8°
C4EC41C1CC6C108.3°124.2°
C4EC41C1CC2C71.4°55.5°
C4EC41C31H2657.0°57.7°
C4EC41C51H3053.9°177.9°
C4EC41C51H31172.9°57.7°
C41C4EH34H35120.0°120.0°
C41C4EH34H36120.0°120.1°
C41C4EH35H36120.0°120.0°
C41C31C34H26118.8°120.1°
C31C41C1CC6C134.2°115.7°
C31C41C1CC2C46.1°64.7°
C41C31C21H24170.6°179.2°
C41C31C21H2570.5°60.8°
C41C31C34H2755.7°175.4°
C41C31C34H2864.3°64.6°
C41C31C34H29175.7°55.4°
C31C41C51H30171.3°62.2°
C31C41C51H3169.8°177.6°
C31C41C4EH3460.2°60.0°
C31C41C4EH3559.9°180.0°
C31C41C4EH36179.8°60.1°
C1CC41C31C3458.9°57.6°
C41C1CC6CC2C179.7°179.7°
C41C1CC6CC5C179.9°179.8°
C41C1CC2CC3C179.9°180.0°
C1CC41C31H2659.1°62.5°
C1CC41C51H3061.7°57.6°
C1CC41C51H3157.3°62.5°
C1CC41C4EH3458.7°179.8°
C1CC41C4EH35178.7°59.9°
C1CC41C4EH3661.3°60.1°
C41C1CC2CH370.1°0.1°
C41C1CC6CH410.1°0.0°
C34C31C21H2447.8°59.3°
C34C31C21H25166.7°179.3°
C31C34H27H28120.0°120.0°
C31C34H27H29120.0°120.1°
C31C34H28H29120.0°120.0°
C1CC6CC5CH41180.0°179.8°
C6CC1CC2CC3C0.2°0.3°
C1CC6CC5CC4C0.2°0.5°
C6CC1CC2CH37179.9°179.8°
C1CC6CC5CH40179.8°179.7°
C2CC1CC6CC5C0.2°0.5°
C1CC2CC3CH37180.0°179.9°
C1CC2CC3CC4C0.0°0.0°
C1CC2CC3CO3C179.8°179.9°
C2CC1CC6CH41179.8°179.7°
C6CC5CC4CH40180.0°179.8°
C6CC5CC4CC3C0.0°0.3°
C6CC5CC4CH39179.9°179.8°
C2CC3CC4CC5C0.0°0.0°
C2CC3CC4CO3C179.8°179.9°
C2CC3CO3CH38180.0°89.9°
C2CC3CC4CH39180.0°180.0°
C5CC4CC3CH39180.0°180.0°
C5CC4CC3CO3C179.8°179.9°
C4CC5CC6CH41179.8°179.7°
C4CC3CC2CH37180.0°180.0°
C4CC3CO3CH380.2°90.0°
C3CC4CC5CH40179.9°180.0°
O3CC3CC2CH370.2°0.1°
O3CC3CC4CH390.2°0.1°
H1C1N2H3167.9°49.4°
H2C1N2H349.3°169.0°
H3N2C3H5173.4°171.8°
H5C3C4H648.1°50.8°
H5C3C4H7167.7°170.5°
H8C5C6H90.0°0.0°
H12N2AC2AH13170.6°160.9°
H13C2AC3AH14172.5°180.0°
H13C2AC4DH2168.9°55.3°
H13C2AC4DH22173.4°175.4°
H14C3AC3DH1565.7°180.0°
H14C3AC3DH1654.3°60.0°
H14C3AC3DH17174.3°60.0°
H14C3AC3BH1866.3°180.0°
H14C3AC3BH19173.7°60.0°
H14C3AC3BH2053.7°60.0°
H15C3DH16H17120.0°120.0°
H18C3BH19H20120.0°120.0°
H24C21C31H2668.3°60.8°
H25C21C31H2650.6°59.2°
H26C31C34H2763.1°64.5°
H26C31C34H28176.9°55.5°
H26C31C34H2956.9°175.5°
H27C34H28H29120.0°120.0°
H30C51C61H3250.3°179.3°
H30C51C61H3368.5°59.3°
H31C51C61H32169.3°59.2°
H31C51C61H3350.5°60.8°
H34C4EH35H36120.0°120.0°
H39C4CC5CH400.1°0.0°
H40C5CC6CH410.2°0.1°

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon