Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

JB3

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3'C3'sing1.43Å1.44Å
O2'C2'sing1.43Å1.41Å
C3'C2'sing1.55Å1.54Å
C3'C4'sing1.54Å1.52Å
O1PPdoub1.48Å1.54Å
C2'C1'sing1.55Å1.55Å
C4'O4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.52Å
O5'Psing1.61Å1.57Å
O5'C5'sing1.43Å1.47Å
C1'O4'sing1.44Å1.43Å
C1'N9sing1.47Å1.46Å
PO2Psing1.61Å1.47Å
POPPsing1.61Å1.61Å
N2C2sing1.37Å1.35Å
O4PP2doub1.48Å1.48Å
N3C2doub1.31Å1.32Å
N3C4sing1.34Å1.35Å
C2N1sing1.36Å1.36Å
N9C4sing1.37Å1.36ÅAromatic
N9C8sing1.36Å1.37ÅAromatic
C4C5doub1.40Å1.41ÅAromatic
OPPP2sing1.61Å1.61Å
O3GC3Gsing1.43Å1.45Å
P2O1Gsing1.61Å1.57Å
P2O3Psing1.61Å1.45Å
O1GC1Gsing1.43Å1.44Å
N1C6sing1.35Å1.34Å
C3GC2Gsing1.53Å1.56Å
C3GC4Gsing1.53Å1.54Å
C8N7doub1.30Å1.37ÅAromatic
C2GC1Gsing1.53Å1.46Å
C2GO2Gsing1.43Å1.47Å
C5C6sing1.42Å1.38Å
C5N7sing1.35Å1.35ÅAromatic
C5AC4Asing1.51Å1.53Å
C6O6doub1.22Å1.25Å
N4AC4Asing1.35Å1.35Å
N4AC4Gsing1.47Å1.50Å
C4AO4Adoub1.21Å1.28Å
C1GO5Gsing1.43Å1.43Å
C4GC5Gsing1.53Å1.56Å
C5GO5Gsing1.43Å1.37Å
C5GC6Gsing1.53Å1.53Å
C5AH1sing1.09Å1.10Å
C5AH2sing1.09Å1.10Å
C5AH3sing1.09Å1.10Å
N4AH4sing0.97Å1.00Å
C4GH5sing1.09Å1.10Å
C5GH6sing1.09Å1.10Å
C6GH7sing1.09Å1.10Å
C6GH8sing1.09Å1.10Å
C6GH9sing1.09Å1.10Å
C3GH10sing1.09Å1.10Å
O3GH11sing0.97Å0.95Å
C2GH12sing1.09Å1.10Å
O2GH13sing0.97Å0.95Å
C1GH14sing1.09Å1.10Å
O3PH15sing0.97Å0.95Å
O2PH16sing0.97Å0.95Å
C5'H17sing1.09Å1.10Å
C5'H18sing1.09Å1.10Å
C4'H19sing1.09Å1.10Å
C3'H20sing1.09Å1.10Å
O3'H21sing0.97Å0.95Å
C2'H22sing1.09Å1.10Å
O2'H23sing0.97Å0.95Å
C1'H24sing1.09Å1.10Å
C8H25sing1.08Å1.08Å
N2H26sing0.97Å1.00Å
N2H27sing0.97Å1.00Å
N1H28sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3'C3'C2'114.9°110.5°
O3'C3'C4'112.5°110.5°
O3'C3'H20109.0°110.5°
C3'O3'H21109.5°114.0°
O2'C2'C3'117.3°110.9°
O2'C2'C1'110.1°110.9°
O2'C2'H22110.9°110.8°
C2'O2'H23109.5°114.0°
C2'C3'C4'104.4°104.1°
C3'C2'C1'99.7°102.1°
C2'C3'H20107.7°110.5°
C3'C2'H22109.1°110.9°
C3'C4'O4'107.2°107.3°
C3'C4'C5'114.7°109.9°
C3'C4'H19109.9°110.0°
C4'C3'H20108.0°110.5°
O1PPO5'108.3°109.5°
O1PPO2P118.7°109.5°
O1PPOPP109.6°109.4°
C2'C1'O4'103.9°103.5°
C2'C1'N9116.0°110.6°
C1'C2'H22108.9°110.9°
C2'C1'H24109.0°110.6°
O4'C4'C5'104.2°109.9°
C4'O4'C1'108.0°106.9°
O4'C4'H19110.9°109.8°
C4'C5'O5'102.7°109.5°
C4'C5'H17111.1°109.5°
C4'C5'H18111.1°109.5°
C5'C4'H19109.8°109.9°
PO5'C5'122.2°123.0°
O5'PO2P110.9°109.5°
O5'POPP102.8°109.5°
O5'C5'H17111.1°109.5°
O5'C5'H18111.1°109.5°
O4'C1'N9106.9°110.6°
O4'C1'H24110.6°110.6°
C1'N9C4127.4°126.2°
C1'N9C8127.3°126.3°
N9C1'H24110.3°110.7°
O2PPOPP105.4°109.5°
PO2PH16109.5°114.0°
POPPP2131.5°134.0°
N2C2N3121.5°119.0°
N2C2N1117.3°119.0°
C2N2H26120.0°120.0°
C2N2H27120.0°120.0°
O4PP2OPP109.3°109.5°
O4PP2O1G102.2°109.5°
O4PP2O3P118.3°109.4°
C2N3C4116.2°121.1°
N3C2N1121.2°121.9°
N3C4N9127.7°134.2°
N3C4C5123.9°119.7°
C2N1C6125.1°120.3°
C2N1H28117.4°119.8°
C4N9C8105.2°107.5°
N9C4C5108.3°106.1°
N9C8N7111.9°109.8°
N9C8H25124.0°125.1°
C4C5C6118.1°118.6°
C4C5N7109.1°107.2°
OPPP2O1G102.1°109.5°
OPPP2O3P104.8°109.4°
O3GC3GC2G110.8°109.6°
O3GC3GC4G109.1°109.6°
O3GC3GH10110.2°109.6°
C3GO3GH11109.5°113.9°
O1GP2O3P118.9°109.5°
P2O1GC1G121.9°123.0°
P2O3PH15109.5°114.0°
O1GC1GC2G108.5°109.5°
O1GC1GO5G103.9°109.5°
O1GC1GH14109.5°109.5°
N1C6C5115.4°118.3°
N1C6O6121.6°120.9°
C6N1H28117.5°119.8°
C2GC3GC4G109.1°109.0°
C3GC2GC1G109.4°109.2°
C3GC2GO2G114.0°109.5°
C2GC3GH10108.7°109.5°
C3GC2GH12107.5°109.6°
C3GC4GN4A108.6°109.5°
C3GC4GC5G111.7°109.2°
C3GC4GH5108.9°109.6°
C4GC3GH10109.0°109.5°
C8N7C5105.0°109.4°
N7C8H25124.0°125.1°
C1GC2GO2G108.3°109.5°
C2GC1GO5G115.8°109.4°
C1GC2GH12108.7°109.5°
C2GC1GH14109.2°109.4°
O2GC2GH12108.7°109.5°
C2GO2GH13109.5°114.0°
C6C5N7132.8°134.2°
C5C6O6122.7°120.8°
C5AC4AN4A111.7°120.0°
C5AC4AO4A114.2°120.0°
C4AC5AH1109.5°109.5°
C4AC5AH2109.5°109.5°
C4AC5AH3109.5°109.5°
C4AN4AC4G117.1°120.0°
N4AC4AO4A134.0°120.0°
C4AN4AH4121.4°120.0°
N4AC4GC5G109.6°109.5°
C4GN4AH4121.4°120.0°
N4AC4GH5109.4°109.6°
C1GO5GC5G121.0°114.1°
O5GC1GH14109.7°109.5°
C4GC5GO5G111.2°109.4°
C4GC5GC6G114.1°109.5°
C5GC4GH5108.6°109.5°
C4GC5GH6105.2°109.4°
O5GC5GC6G112.7°109.5°
O5GC5GH6107.4°109.5°
C6GC5GH6105.6°109.5°
C5GC6GH7109.5°109.5°
C5GC6GH8109.4°109.5°
C5GC6GH9109.4°109.5°
H1C5AH2109.5°109.5°
H1C5AH3109.5°109.5°
H2C5AH3109.5°109.5°
H7C6GH8109.5°109.4°
H7C6GH9109.5°109.5°
H8C6GH9109.5°109.5°
H17C5'H18109.5°109.4°
H26N2H27120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3'C3'C2'O2'26.5°20.4°
O3'C3'C2'C4'123.7°118.7°
O3'C3'C2'H20121.7°122.6°
O3'C3'C4'H20120.4°122.7°
O3'C3'C2'C1'92.2°97.8°
O3'C3'C4'O4'113.0°120.7°
O3'C3'C4'C5'131.9°119.9°
O3'C3'C4'H197.6°1.2°
O3'C3'C2'H22153.8°144.0°
O2'C2'C3'C1'118.8°118.2°
O2'C2'C3'H22127.2°123.6°
O2'C2'C3'C4'150.2°139.1°
O2'C2'C1'H22121.9°123.6°
O2'C2'C1'O4'164.9°155.2°
O2'C2'C1'N978.2°86.3°
O2'C2'C3'H2095.1°102.2°
O2'C2'C1'H2446.9°36.7°
C2'C3'C4'H20114.4°118.7°
C3'C2'C1'H22114.2°118.2°
C2'C3'C4'O4'12.2°2.0°
C2'C3'C4'C5'102.9°121.5°
C3'C2'C1'O4'40.9°37.0°
C3'C2'C1'N9157.8°155.5°
C2'C3'C4'H19132.8°117.4°
C2'C3'O3'H21180.0°61.5°
C3'C2'O2'H23180.0°61.5°
C3'C2'C1'H2477.0°81.5°
C4'C3'C2'C1'31.5°20.9°
C3'C4'O4'C5'121.9°119.5°
C3'C4'O4'H19120.0°119.6°
C3'C4'C5'H19124.3°121.2°
C3'C4'C5'O5'74.6°175.7°
C3'C4'O4'C1'14.6°26.5°
C3'C4'C5'H1744.3°64.3°
C3'C4'C5'H18166.5°55.7°
C4'C3'O3'H2160.8°176.2°
C4'C3'C2'H2282.5°97.3°
O1PPO5'O2P131.9°120.0°
O1PPO5'OPP115.9°120.0°
O1PPO5'C5'167.6°55.0°
O1PPO2POPP123.2°120.0°
O1PPOPPP255.5°45.1°
O1PPO2PH160.0°180.0°
C2'C1'O4'C4'35.4°40.0°
C2'C1'O4'N9123.1°118.5°
C2'C1'O4'H24116.8°118.5°
C2'C1'N9H24124.5°123.0°
C2'C1'N9C4134.3°85.0°
C2'C1'N9C848.9°94.7°
C1'C2'C3'H20146.1°139.6°
C1'C2'O2'H2367.0°174.2°
O4'C4'C5'H19118.9°120.9°
O4'C4'C5'O5'168.6°66.4°
C4'O4'C1'N9158.5°158.6°
O4'C4'C5'H1772.6°53.6°
O4'C4'C5'H1849.7°173.6°
O4'C4'C3'H20126.6°116.6°
C4'O4'C1'H2481.4°78.5°
C4'C5'O5'P171.0°180.0°
C4'C5'O5'H17118.9°120.0°
C4'C5'O5'H18118.9°120.0°
C5'C4'O4'C1'136.5°145.9°
C4'C5'H17H18123.2°120.0°
C5'C4'C3'H2011.5°2.8°
O5'PO2POPP110.5°120.0°
O5'POPPP259.5°165.1°
O5'PO2PH16126.3°60.0°
PO5'C5'H1752.1°60.0°
PO5'C5'H1870.1°60.0°
C5'O5'PO2P60.5°65.0°
C5'O5'POPP51.7°174.9°
O5'C5'H17H18123.2°120.0°
O5'C5'C4'H1949.7°54.5°
O4'C1'N9H24120.3°122.9°
O4'C1'N9C4110.5°160.9°
O4'C1'N9C866.3°19.4°
C1'O4'C4'H19105.3°93.1°
O4'C1'C2'H2273.3°81.2°
C1'N9C4N30.8°0.0°
C1'N9C4C8177.3°179.7°
C1'N9C4C5179.0°179.9°
C1'N9C8N7177.3°180.0°
N9C1'C2'H2243.6°37.3°
C1'N9C8H252.7°0.0°
O2PPOPPP2175.7°74.9°
POPPP2O4P2.1°44.9°
POPPP2O1G109.7°164.9°
POPPP2O3P125.7°75.1°
OPPPO2PH16123.2°60.1°
N2C2N3N1178.0°180.0°
N2C2N3C4177.4°180.0°
N2C2N1C6176.3°179.8°
C2N2H26H27180.0°179.9°
N2C2N1H283.7°0.0°
O4PP2OPPO1G107.6°120.0°
O4PP2OPPO3P127.8°120.0°
O4PP2O1GO3P132.3°119.9°
O4PP2O1GC1G167.2°54.9°
O4PP2O3PH150.0°180.0°
C2N3C4N9178.3°180.0°
C2N3C4C50.4°0.2°
N3C2N1C61.8°0.2°
N3C2N2H260.0°0.1°
N3C2N2H27180.0°180.0°
N3C2N1H28178.2°180.0°
C4N3C2N10.7°0.0°
N3C4N9C5178.2°179.8°
N3C4N9C8176.5°179.8°
N3C4C5C61.0°0.2°
N3C4C5N7179.2°179.7°
C2N1C6H28180.0°179.8°
C2N1C6C52.3°0.3°
C2N1C6O6171.2°179.8°
N1C2N2H26178.1°179.9°
N1C2N2H271.9°0.1°
C4N9C8N75.4°0.2°
N9C4C5C6179.3°180.0°
N9C4C5N72.5°0.4°
C4N9C1'H249.9°38.0°
C4N9C8H25174.6°179.7°
C8N9C4C51.7°0.4°
N9C8N7H25180.0°180.0°
N9C8N7C56.9°0.1°
C8N9C1'H24173.4°142.4°
C4C5C6N11.9°0.1°
C4C5N7C85.5°0.3°
C4C5C6N7177.7°179.4°
C4C5C6O6171.6°180.0°
OPPP2O1GO3P114.6°120.0°
OPPP2O1GC1G54.1°175.0°
OPPP2O3PH15122.0°60.0°
O3GC3GC2GC4G120.1°119.9°
O3GC3GC2GH10121.2°120.3°
O3GC3GC4GH10120.3°120.3°
O3GC3GC2GC1G174.2°176.8°
O3GC3GC2GO2G52.7°56.9°
O3GC3GC4GN4A63.6°63.3°
O3GC3GC4GC5G175.4°176.8°
O3GC3GC4GH555.4°56.9°
O3GC3GC2GH1267.9°63.2°
P2O1GC1GC2G126.9°150.0°
P2O1GC1GO5G109.4°90.1°
P2O1GC1GH147.7°30.0°
O1GP2O3PH15124.8°60.0°
O3PP2O1GC1G60.5°65.0°
O1GC1GC2GC3G67.1°62.4°
O1GC1GC2GO5G116.3°120.0°
O1GC1GC2GH14119.3°120.1°
O1GC1GC2GO2G168.0°177.7°
O1GC1GO5GH14117.0°120.1°
O1GC1GO5GC5G71.8°58.8°
O1GC1GC2GH1250.1°57.6°
N1C6C5O6173.4°179.9°
N1C6C5N7179.6°179.3°
C2GC3GC4GH10118.6°119.8°
C3GC2GC1GO2G124.9°119.9°
C3GC2GC1GH12117.2°120.0°
C3GC2GO2GH12120.0°120.2°
C2GC3GC4GN4A175.3°176.8°
C3GC2GC1GO5G49.2°57.6°
C2GC3GC4GC5G54.3°56.9°
C2GC3GC4GH565.7°63.0°
C2GC3GO3GH11128.3°60.0°
C3GC2GO2GH13180.0°180.0°
C3GC2GC1GH14173.5°177.6°
C4GC3GC2GC1G54.2°56.9°
C4GC3GC2GO2G67.4°63.0°
C3GC4GN4AC4A91.0°155.3°
C3GC4GN4AC5G122.3°119.7°
C3GC4GN4AH5118.7°120.2°
C3GC4GC5GH5120.2°119.9°
C3GC4GC5GO5G48.3°57.6°
C3GC4GC5GC6G177.1°177.6°
C3GC4GN4AH489.0°24.7°
C3GC4GC5GH667.7°62.4°
C4GC3GO3GH118.2°179.6°
C4GC3GC2GH12172.0°176.9°
C8N7C5C6176.6°179.7°
C1GC2GO2GH12117.9°120.1°
C2GC1GO5GH14124.1°119.9°
C2GC1GO5GC5G47.1°61.1°
C1GC2GC3GH1064.6°62.9°
C1GC2GO2GH1357.9°60.3°
O2GC2GC1GO5G75.7°62.3°
O2GC2GC3GH10173.9°177.2°
O2GC2GC1GH1448.7°57.6°
C5C6N1H28177.7°180.0°
N7C5C6O66.1°0.6°
C5N7C8H25173.1°180.0°
C5AC4AN4AO4A176.7°179.7°
C5AC4AN4AC4G168.5°179.7°
C4AC5AH1H2120.0°120.0°
C4AC5AH1H3120.0°120.0°
C4AC5AH2H3120.0°120.0°
C5AC4AN4AH411.5°0.3°
O6C6N1H288.8°0.1°
C4AN4AC4GH4180.0°179.9°
C4AN4AC4GC5G146.8°85.0°
N4AC4AC5AH1177.4°179.7°
N4AC4AC5AH257.4°59.7°
N4AC4AC5AH362.6°60.3°
C4AN4AC4GH527.7°35.1°
C4GN4AC4AO4A8.3°0.1°
N4AC4GC5GH5119.5°120.2°
N4AC4GC5GO5G168.6°177.5°
N4AC4GC5GC6G62.5°62.5°
N4AC4GC5GH652.7°57.5°
N4AC4GC3GH1056.7°57.0°
O4AC4AC5AH10.0°0.0°
O4AC4AC5AH2120.0°119.9°
O4AC4AC5AH3120.0°120.0°
O4AC4AN4AH4171.7°180.0°
C1GO5GC5GC4G44.1°61.1°
C1GO5GC5GC6G173.7°178.8°
C1GO5GC5GH670.5°58.8°
O5GC1GC2GH12166.4°177.6°
C4GC5GO5GC6G129.6°120.0°
C4GC5GO5GH6114.6°119.9°
C4GC5GC6GH6115.0°120.0°
C5GC4GN4AH433.2°95.0°
C4GC5GC6GH7180.0°60.1°
C4GC5GC6GH860.0°180.0°
C4GC5GC6GH960.0°60.0°
C5GC4GC3GH1064.2°62.9°
O5GC5GC6GH6116.9°120.0°
O5GC5GC4GH571.9°62.4°
O5GC5GC6GH751.9°59.9°
O5GC5GC6GH8171.9°60.0°
O5GC5GC6GH968.1°180.0°
C5GO5GC1GH14171.2°178.9°
C6GC5GC4GH557.0°57.7°
C5GC6GH7H8120.0°120.0°
C5GC6GH7H9120.0°120.1°
C5GC6GH8H9119.9°120.0°
H1C5AH2H3120.0°120.0°
H4N4AC4GH5152.3°144.8°
H5C4GC5GH6172.2°177.7°
H5C4GC3GH10175.8°177.2°
H6C5GC6GH765.0°180.0°
H6C5GC6GH855.0°60.0°
H6C5GC6GH9175.0°60.0°
H7C6GH8H9120.0°120.0°
H10C3GO3GH11111.4°60.2°
H10C3GC2GH1253.3°57.0°
H12C2GO2GH1360.0°59.8°
H12C2GC1GH1469.3°62.5°
H17C5'C4'H19168.6°174.6°
H18C5'C4'H1969.2°65.5°
H19C4'C3'H20112.7°123.9°
H20C3'O3'H2159.0°61.1°
H20C3'C2'H2232.1°21.4°
H22C2'O2'H2353.7°62.2°
H22C2'C1'H24168.8°160.3°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon