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JB2

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3'C3'sing1.43Å1.42Å
O2'C2'sing1.43Å1.43Å
C3'C2'sing1.55Å1.49Å
C3'C4'sing1.54Å1.54Å
O1PPdoub1.48Å1.50Å
C2'C1'sing1.55Å1.52Å
C4'O4'sing1.44Å1.43Å
C4'C5'sing1.53Å1.50Å
O5'Psing1.61Å1.63Å
O5'C5'sing1.43Å1.46Å
C1'O4'sing1.44Å1.44Å
C1'N9sing1.46Å1.44Å
N2C2sing1.37Å1.36Å
PO2Psing1.61Å1.51Å
POPPsing1.61Å1.63Å
O4PP2doub1.48Å1.47Å
N3C2doub1.31Å1.32Å
N3C4sing1.34Å1.36Å
C2N1sing1.36Å1.40Å
N9C4sing1.37Å1.33ÅAromatic
N9C8sing1.37Å1.39ÅAromatic
C4C5doub1.40Å1.40ÅAromatic
OPPP2sing1.61Å1.59Å
P2O1Gsing1.61Å1.54Å
P2O3Psing1.61Å1.45Å
N1C6sing1.35Å1.42Å
O1GC1Gsing1.43Å1.37Å
C8N7doub1.30Å1.33ÅAromatic
O3GC3Gsing1.43Å1.50Å
C3GC2Gsing1.53Å1.58Å
C3GC4Gsing1.53Å1.57Å
N4AC4Gsing1.47Å1.51Å
C5C6sing1.41Å1.36Å
C5N7sing1.35Å1.40ÅAromatic
C6O6doub1.22Å1.23Å
C2GC1Gsing1.53Å1.52Å
C2GO2Gsing1.43Å1.48Å
C4GC5Gsing1.53Å1.52Å
C1GO5Gsing1.43Å1.46Å
C5GO5Gsing1.43Å1.38Å
C5GC6Gsing1.53Å1.53Å
C8H1sing1.08Å1.08Å
N1H2sing0.97Å1.00Å
N2H3sing0.97Å1.00Å
N2H4sing0.97Å1.00Å
C1'H5sing1.09Å1.10Å
C2'H6sing1.09Å1.10Å
O2'H7sing0.97Å0.95Å
C3'H8sing1.09Å1.10Å
O3'H9sing0.97Å0.95Å
C4'H10sing1.09Å1.10Å
C5'H11sing1.09Å1.10Å
C5'H12sing1.09Å1.10Å
O2PH13sing0.97Å0.95Å
O3PH14sing0.97Å0.95Å
C1GH15sing1.09Å1.10Å
C5GH16sing1.09Å1.10Å
C6GH17sing1.09Å1.10Å
C6GH18sing1.09Å1.10Å
C6GH19sing1.09Å1.10Å
C2GH20sing1.09Å1.10Å
O2GH21sing0.97Å0.95Å
C3GH22sing1.09Å1.10Å
O3GH23sing0.97Å0.95Å
C4GH24sing1.09Å1.10Å
N4AH25sing1.01Å1.00Å
N4AH26sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3'C3'C2'116.6°110.5°
O3'C3'C4'107.5°110.5°
O3'C3'H8110.4°110.6°
C3'O3'H9109.5°114.0°
O2'C2'C3'118.0°110.6°
O2'C2'C1'109.9°110.5°
O2'C2'H6109.1°110.4°
C2'O2'H7109.5°114.0°
C2'C3'C4'103.8°104.1°
C3'C2'C1'103.1°104.1°
C3'C2'H6108.3°110.5°
C2'C3'H8109.4°110.5°
C3'C4'O4'105.3°104.8°
C3'C4'C5'112.8°110.4°
C4'C3'H8108.7°110.6°
C3'C4'H10110.5°110.4°
O1PPO5'106.0°109.5°
O1PPO2P119.1°109.5°
O1PPOPP109.7°109.5°
C2'C1'O4'101.6°104.8°
C2'C1'N9116.2°110.3°
C2'C1'H5109.9°110.5°
C1'C2'H6108.0°110.5°
O4'C4'C5'104.6°110.3°
C4'O4'C1'109.1°105.3°
O4'C4'H10112.2°110.3°
C4'C5'O5'103.3°109.5°
C5'C4'H10111.2°110.4°
C4'C5'H11111.0°109.4°
C4'C5'H12111.0°109.5°
PO5'C5'120.6°123.0°
O5'PO2P109.6°109.5°
O5'POPP105.9°109.5°
O5'C5'H11111.0°109.5°
O5'C5'H12111.0°109.5°
O4'C1'N9106.7°110.4°
O4'C1'H5111.0°110.4°
C1'N9C4127.3°126.3°
C1'N9C8127.8°126.2°
N9C1'H5111.0°110.3°
N2C2N3122.0°119.1°
N2C2N1114.4°119.0°
C2N2H3120.0°120.1°
C2N2H4120.0°120.0°
O2PPOPP105.9°109.5°
PO2PH13109.5°114.0°
POPPP2130.2°134.0°
O4PP2OPP109.6°109.4°
O4PP2O1G104.0°109.5°
O4PP2O3P115.9°109.5°
C2N3C4115.6°121.1°
N3C2N1123.6°121.9°
N3C4N9125.7°134.2°
N3C4C5124.7°119.7°
C2N1C6120.3°120.3°
C2N1H2119.8°119.9°
C4N9C8104.8°107.5°
N9C4C5109.4°106.1°
N9C8N7113.7°109.8°
N9C8H1123.1°125.1°
C4C5C6119.9°118.6°
C4C5N7108.0°107.3°
OPPP2O1G101.2°109.4°
OPPP2O3P105.9°109.5°
O1GP2O3P119.1°109.5°
P2O1GC1G127.2°123.0°
P2O3PH14109.5°114.1°
N1C6C5115.9°118.4°
N1C6O6116.2°120.8°
C6N1H2119.9°119.8°
O1GC1GC2G111.4°109.5°
O1GC1GO5G102.3°109.5°
O1GC1GH15110.0°109.5°
C8N7C5103.9°109.3°
N7C8H1123.2°125.1°
O3GC3GC2G106.2°109.6°
O3GC3GC4G110.1°109.5°
O3GC3GH22110.5°109.6°
C3GO3GH23109.5°114.0°
C2GC3GC4G111.1°109.1°
C3GC2GC1G107.9°109.2°
C3GC2GO2G110.1°109.5°
C3GC2GH20110.4°109.6°
C2GC3GH22109.4°109.5°
C3GC4GN4A102.7°109.5°
C3GC4GC5G115.1°109.1°
C4GC3GH22109.5°109.5°
C3GC4GH24110.8°109.5°
N4AC4GC5G104.2°109.5°
N4AC4GH24111.8°109.6°
C4GN4AH25109.5°111.0°
C4GN4AH26109.5°111.0°
C6C5N7132.1°134.1°
C5C6O6127.1°120.8°
C1GC2GO2G105.2°109.5°
C2GC1GO5G116.6°109.4°
C2GC1GH15107.8°109.5°
C1GC2GH20111.3°109.5°
O2GC2GH20111.8°109.5°
C2GO2GH21109.5°114.0°
C4GC5GO5G112.7°109.5°
C4GC5GC6G129.9°109.5°
C4GC5GH1698.0°109.5°
C5GC4GH24111.7°109.5°
C1GO5GC5G117.6°114.1°
O5GC1GH15108.6°109.5°
O5GC5GC6G111.1°109.5°
O5GC5GH1698.9°109.4°
C6GC5GH1698.0°109.5°
C5GC6GH17109.5°109.4°
C5GC6GH18109.5°109.5°
C5GC6GH19109.5°109.4°
H3N2H4120.0°120.0°
H11C5'H12109.5°109.5°
H17C6GH18109.5°109.5°
H17C6GH19109.5°109.5°
H18C6GH19109.5°109.5°
H25N4AH26109.5°111.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3'C3'C2'O2'33.8°0.1°
O3'C3'C2'C4'118.0°118.6°
O3'C3'C2'H8126.1°122.7°
O3'C3'C4'H8119.5°122.7°
O3'C3'C2'C1'87.5°118.6°
O3'C3'C4'O4'115.0°142.6°
O3'C3'C4'C5'131.5°98.6°
O3'C3'C2'H6158.3°122.7°
O3'C3'C4'H106.3°23.8°
O2'C2'C3'C1'121.2°118.7°
O2'C2'C3'H6124.5°122.6°
O2'C2'C3'C4'151.8°118.7°
O2'C2'C1'H6118.9°122.5°
O2'C2'C1'O4'167.7°142.8°
O2'C2'C1'N977.0°98.4°
O2'C2'C1'H550.1°23.9°
O2'C2'C3'H892.3°122.6°
C2'C3'C4'H8116.3°118.7°
C3'C2'C1'H6114.5°118.7°
C2'C3'C4'O4'9.1°24.0°
C2'C3'C4'C5'104.3°142.8°
C3'C2'C1'O4'41.1°24.0°
C3'C2'C1'N9156.5°142.8°
C3'C2'C1'H576.5°94.9°
C3'C2'O2'H7180.0°65.2°
C2'C3'O3'H9180.0°61.5°
C2'C3'C4'H10130.5°94.8°
C4'C3'C2'C1'30.6°0.0°
C3'C4'O4'C5'119.1°118.8°
C3'C4'O4'H10120.3°118.9°
C3'C4'C5'H10124.8°122.4°
C3'C4'C5'O5'77.5°175.0°
C3'C4'O4'C1'17.7°40.5°
C4'C3'C2'H683.7°118.7°
C4'C3'O3'H964.0°176.1°
C3'C4'C5'H1141.5°55.0°
C3'C4'C5'H12163.4°65.0°
O1PPO5'O2P129.7°120.0°
O1PPO5'OPP116.5°120.0°
O1PPO5'C5'171.4°55.0°
O1PPO2POPP124.0°120.0°
O1PPOPPP259.5°45.0°
O1PPO2PH130.0°179.9°
C2'C1'O4'C4'36.7°40.5°
C2'C1'O4'N9122.1°118.8°
C2'C1'O4'H5116.8°118.9°
C2'C1'N9H5126.5°122.3°
C2'C1'N9C4133.7°88.2°
C2'C1'N9C843.5°91.8°
C1'C2'O2'H762.3°180.0°
C1'C2'C3'H8146.5°118.7°
O4'C4'C5'H10121.3°122.2°
O4'C4'C5'O5'168.6°69.6°
C4'O4'C1'N9158.9°159.3°
C4'O4'C1'H580.0°78.4°
O4'C4'C3'H8125.4°94.7°
O4'C4'C5'H1172.4°170.4°
O4'C4'C5'H1249.6°50.4°
C4'C5'O5'P169.4°180.0°
C4'C5'O5'H11119.0°120.0°
C4'C5'O5'H12119.0°120.0°
C5'C4'O4'C1'136.7°159.4°
C5'C4'C3'H812.0°24.1°
C4'C5'H11H12122.8°120.0°
O5'PO2POPP113.8°120.0°
O5'POPPP254.5°165.0°
PO5'C5'H1150.4°60.0°
PO5'C5'H1271.6°60.0°
O5'PO2PH13122.2°60.1°
C5'O5'PO2P58.8°65.0°
C5'O5'POPP54.9°175.0°
O5'C5'C4'H1047.3°52.6°
O5'C5'H11H12122.9°120.0°
O4'C1'N9H5121.1°122.3°
O4'C1'N9C4113.9°156.4°
O4'C1'N9C868.9°23.6°
O4'C1'C2'H673.4°94.7°
C1'O4'C4'H10102.6°78.3°
C1'N9C4N37.5°0.0°
C1'N9C4C8177.7°180.0°
C1'N9C4C5177.8°180.0°
C1'N9C8N7174.1°180.0°
C1'N9C8H15.8°0.0°
N9C1'C2'H641.9°24.1°
N2C2N3N1178.5°179.9°
N2C2N3C4177.1°179.7°
N2C2N1C6179.5°180.0°
N2C2N1H20.5°0.1°
C2N2H3H4180.0°180.0°
O2PPOPPP2170.8°75.0°
POPPP2O4P10.3°45.0°
POPPP2O1G119.7°165.0°
POPPP2O3P115.4°75.0°
OPPPO2PH13124.0°59.9°
O4PP2OPPO1G109.4°120.0°
O4PP2OPPO3P125.7°120.1°
O4PP2O1GO3P130.8°120.1°
O4PP2O1GC1G174.6°55.1°
O4PP2O3PH140.0°180.0°
C2N3C4N9176.5°179.7°
C2N3C4C52.7°0.3°
N3C2N1C60.9°0.1°
N3C2N1H2179.1°180.0°
N3C2N2H30.0°180.0°
N3C2N2H4180.0°0.0°
C4N3C2N11.3°0.3°
N3C4N9C5174.7°180.0°
N3C4N9C8174.7°180.0°
N3C4C5C61.7°0.0°
N3C4C5N7178.1°180.0°
C2N1C6H2180.0°179.9°
C2N1C6C51.9°0.2°
C2N1C6O6172.7°180.0°
N1C2N2H3178.6°0.0°
N1C2N2H41.4°180.0°
C4N9C8N73.6°0.0°
N9C4C5C6176.4°180.0°
N9C4C5N73.4°0.0°
C4N9C8H1176.4°180.0°
C4N9C1'H57.2°34.1°
C8N9C4C50.1°0.0°
N9C8N7H1180.0°180.0°
N9C8N7C55.5°0.0°
C8N9C1'H5170.0°145.9°
C4C5C6N10.7°0.2°
C4C5N7C85.3°0.0°
C4C5C6N7179.7°180.0°
C4C5C6O6170.3°180.0°
OPPP2O1GO3P115.5°120.0°
OPPP2O1GC1G60.9°175.0°
OPPP2O3PH14121.8°60.0°
P2O1GC1GC2G123.5°150.1°
P2O1GC1GO5G111.3°90.0°
O1GP2O3PH14125.3°60.0°
P2O1GC1GH154.0°30.0°
O3PP2O1GC1G54.6°65.0°
N1C6C5O6169.5°179.7°
N1C6C5N7179.5°179.8°
O1GC1GC2GC3G67.0°62.4°
O1GC1GC2GO5G116.9°120.0°
O1GC1GC2GH15120.8°120.1°
O1GC1GC2GO2G175.5°177.7°
O1GC1GO5GH15116.2°120.0°
O1GC1GO5GC5G68.8°58.9°
O1GC1GC2GH2054.3°57.6°
C8N7C5C6174.5°180.0°
O3GC3GC2GC4G119.7°119.9°
O3GC3GC2GH22119.3°120.3°
O3GC3GC4GH22121.7°120.3°
O3GC3GC4GN4A83.0°63.2°
O3GC3GC2GC1G166.4°176.9°
O3GC3GC2GO2G52.1°56.9°
O3GC3GC4GC5G164.4°176.8°
O3GC3GC2GH2071.8°63.2°
O3GC3GC4GH2436.5°57.0°
C2GC3GC4GH22120.9°119.8°
C2GC3GC4GN4A159.6°176.9°
C3GC2GC1GO2G117.5°119.9°
C3GC2GC1GH20121.3°120.0°
C3GC2GO2GH20123.1°120.2°
C2GC3GC4GC5G47.1°56.9°
C3GC2GC1GO5G49.9°57.6°
C3GC2GC1GH15172.2°177.6°
C3GC2GO2GH21180.0°179.7°
C2GC3GO3GH23180.0°60.0°
C2GC3GC4GH2480.9°62.9°
C3GC4GN4AC5G120.4°119.7°
C3GC4GN4AH24118.8°120.2°
C4GC3GC2GC1G46.6°57.0°
C4GC3GC2GO2G67.6°62.9°
C3GC4GC5GH24127.5°119.8°
C3GC4GC5GO5G46.2°57.6°
C3GC4GC5GC6G164.6°177.6°
C3GC4GC5GH1657.0°62.4°
C4GC3GC2GH20168.4°176.9°
C4GC3GO3GH2359.6°179.6°
C3GC4GN4AH25180.0°180.0°
C3GC4GN4AH2660.0°56.0°
N4AC4GC5GH24120.8°120.2°
N4AC4GC5GO5G157.8°177.5°
N4AC4GC5GC6G53.0°62.5°
N4AC4GC5GH1654.6°57.5°
N4AC4GC3GH2238.7°57.0°
C4GN4AH25H26120.0°124.0°
C5C6N1H2178.1°179.7°
N7C5C6O610.0°0.0°
C5N7C8H1174.5°180.0°
O6C6N1H27.3°0.1°
C1GC2GO2GH20120.9°120.1°
C2GC1GO5GH15122.0°120.0°
C2GC1GO5GC5G53.0°61.1°
C1GC2GO2GH2164.0°60.0°
C1GC2GC3GH2274.4°62.8°
O2GC2GC1GO5G67.7°62.3°
O2GC2GC1GH1554.7°57.7°
O2GC2GC3GH22171.3°177.2°
C4GC5GO5GC1G47.9°61.1°
C4GC5GO5GC6G155.1°120.0°
C4GC5GO5GH16102.7°120.0°
C4GC5GC6GH16107.6°120.1°
C4GC5GC6GH17180.0°180.0°
C4GC5GC6GH1860.0°60.0°
C4GC5GC6GH1960.0°60.0°
C5GC4GC3GH2273.9°62.9°
C5GC4GN4AH2559.6°60.3°
C5GC4GN4AH2660.4°63.7°
C1GO5GC5GC6G157.0°178.9°
C1GO5GC5GH1654.8°58.9°
O5GC1GC2GH20171.1°177.6°
O5GC5GC6GH16102.8°119.9°
C5GO5GC1GH15175.0°178.9°
O5GC5GC6GH1730.4°60.0°
O5GC5GC6GH18150.4°180.0°
O5GC5GC6GH1989.6°60.1°
O5GC5GC4GH2481.4°62.3°
C5GC6GH17H18120.0°120.0°
C5GC6GH17H19120.0°120.0°
C5GC6GH18H19120.0°120.0°
C6GC5GC4GH2467.9°57.7°
H5C1'C2'H6169.0°146.4°
H6C2'O2'H755.9°57.4°
H6C2'C3'H832.2°0.0°
H8C3'O3'H954.4°61.2°
H8C3'C4'H10113.2°146.5°
H10C4'C5'H11166.3°67.4°
H10C4'C5'H1271.7°172.7°
H15C1GC2GH2066.5°62.4°
H16C5GC6GH1772.4°59.9°
H16C5GC6GH1847.6°60.0°
H16C5GC6GH19167.6°180.0°
H16C5GC4GH24175.4°177.8°
H17C6GH18H19120.0°120.1°
H20C2GO2GH2156.9°60.1°
H20C2GC3GH2247.4°57.1°
H22C3GO3GH2361.5°60.2°
H22C3GC4GH24158.2°177.3°
H24C4GN4AH2561.2°59.8°
H24C4GN4AH26178.8°176.2°

218500

PDB entries from 2024-04-17

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