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Summary Geometry Related PDB entries

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Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N01	C02	sing	1.35Å	1.41Å
O03	C02	doub	1.22Å	1.21Å
C02	C04	sing	1.48Å	1.51Å
C04	C12	doub	1.39Å	1.39Å	Aromatic
C04	C05	sing	1.40Å	1.40Å	Aromatic
C12	C11	sing	1.39Å	1.42Å	Aromatic
C05	C06	doub	1.36Å	1.39Å	Aromatic
C11	C07	doub	1.41Å	1.37Å	Aromatic
C11	C10	sing	1.47Å	1.43Å	Aromatic
C06	C07	sing	1.39Å	1.42Å	Aromatic
C07	N08	sing	1.37Å	1.38Å	Aromatic
C10	C09	doub	1.34Å	1.39Å	Aromatic
N08	C09	sing	1.37Å	1.35Å	Aromatic
C10	H1	sing	1.08Å	1.08Å
N01	H2	sing	0.97Å	1.00Å
N01	H3	sing	0.97Å	1.00Å
C05	H4	sing	1.08Å	1.08Å
C06	H5	sing	1.08Å	1.08Å
N08	H6	sing	0.97Å	1.00Å
C09	H7	sing	1.08Å	1.08Å
C12	H8	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N01	C02	O03	120.9°	120.0°
N01	C02	C04	119.0°	120.0°
C02	N01	H2	120.0°	120.0°
C02	N01	H3	120.0°	120.0°
O03	C02	C04	120.2°	120.0°
C02	C04	C12	120.1°	120.0°
C02	C04	C05	119.0°	120.0°
C12	C04	C05	120.9°	120.0°
C04	C12	C11	119.3°	119.4°
C04	C12	H8	120.4°	120.3°
C04	C05	C06	119.6°	120.7°
C04	C05	H4	120.2°	119.7°
C12	C11	C07	120.0°	120.0°
C12	C11	C10	133.3°	134.0°
C11	C12	H8	120.3°	120.3°
C05	C06	C07	120.0°	120.3°
C06	C05	H4	120.2°	119.7°
C05	C06	H5	120.0°	119.9°
C07	C11	C10	106.7°	106.0°
C11	C07	C06	120.2°	119.6°
C11	C07	N08	108.6°	107.1°
C11	C10	C09	106.9°	107.0°
C11	C10	H1	126.5°	126.6°
C06	C07	N08	131.1°	133.2°
C07	C06	H5	120.0°	119.8°
C07	N08	C09	109.3°	110.0°
C07	N08	H6	125.3°	125.0°
C10	C09	N08	108.5°	109.9°
C09	C10	H1	126.5°	126.5°
C10	C09	H7	125.7°	125.1°
C09	N08	H6	125.4°	125.0°
N08	C09	H7	125.8°	125.0°
H2	N01	H3	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N01	C02	O03	C04	179.8°	180.0°
N01	C02	C04	C12	176.8°	180.0°
N01	C02	C04	C05	3.5°	0.1°
C02	N01	H2	H3	179.9°	180.0°
O03	C02	C04	C12	3.4°	0.0°
O03	C02	C04	C05	176.3°	179.9°
O03	C02	N01	H2	0.0°	180.0°
O03	C02	N01	H3	180.0°	0.0°
C02	C04	C12	C05	179.7°	179.9°
C02	C04	C12	C11	179.9°	180.0°
C02	C04	C05	C06	180.0°	180.0°
C04	C02	N01	H2	179.8°	0.0°
C04	C02	N01	H3	0.2°	179.9°
C02	C04	C05	H4	0.0°	0.1°
C02	C04	C12	H8	0.1°	0.0°
C04	C12	C11	H8	180.0°	180.0°
C12	C04	C05	C06	0.3°	0.1°
C04	C12	C11	C07	0.2°	0.0°
C04	C12	C11	C10	179.7°	179.7°
C12	C04	C05	H4	179.7°	180.0°
C05	C04	C12	C11	0.4°	0.0°
C04	C05	C06	H4	180.0°	179.9°
C04	C05	C06	C07	0.1°	0.1°
C04	C05	C06	H5	180.0°	179.9°
C05	C04	C12	H8	179.6°	179.9°
C12	C11	C07	C10	179.6°	179.8°
C12	C11	C07	C06	0.0°	0.0°
C12	C11	C07	N08	179.4°	179.9°
C12	C11	C10	C09	179.5°	179.7°
C12	C11	C10	H1	0.5°	0.1°
C05	C06	C07	C11	0.1°	0.0°
C05	C06	C07	H5	180.0°	180.0°
C05	C06	C07	N08	179.4°	180.0°
C11	C07	C06	N08	179.3°	179.9°
C07	C11	C10	C09	0.0°	0.0°
C11	C07	N08	C09	0.3°	0.3°
C07	C11	C10	H1	180.0°	179.8°
C11	C07	C06	H5	179.9°	180.0°
C11	C07	N08	H6	179.8°	180.0°
C07	C11	C12	H8	179.8°	180.0°
C10	C11	C07	C06	179.6°	179.8°
C10	C11	C07	N08	0.2°	0.2°
C11	C10	C09	H1	180.0°	179.8°
C11	C10	C09	N08	0.2°	0.2°
C11	C10	C09	H7	179.8°	179.8°
C10	C11	C12	H8	0.3°	0.3°
C06	C07	N08	C09	179.6°	179.6°
C07	C06	C05	H4	180.0°	180.0°
C06	C07	N08	H6	0.4°	0.1°
C07	N08	C09	C10	0.3°	0.3°
C07	N08	C09	H6	180.0°	179.7°
N08	C07	C06	H5	0.6°	0.1°
C07	N08	C09	H7	179.7°	179.6°
C10	C09	N08	H7	180.0°	179.9°
C10	C09	N08	H6	179.8°	179.9°
N08	C09	C10	H1	179.8°	180.0°
H1	C10	C09	H7	0.2°	0.0°
H4	C05	C06	H5	0.0°	0.1°
H6	N08	C09	H7	0.2°	0.1°

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PDB entries from 2026-01-14

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