English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

J9W

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C07	C06	doub	1.39Å	1.39Å	Aromatic
C07	C08	sing	1.38Å	1.39Å	Aromatic
C06	C05	sing	1.38Å	1.39Å	Aromatic
C08	C09	doub	1.39Å	1.42Å	Aromatic
C05	C04	doub	1.38Å	1.43Å	Aromatic
C09	C04	sing	1.40Å	1.36Å	Aromatic
C09	C10	sing	1.48Å	1.42Å
C04	O03	sing	1.35Å	1.39Å
O11	C10	doub	1.22Å	1.22Å
C10	N12	sing	1.35Å	1.35Å
O03	C02	sing	1.34Å	1.37Å
N12	C02	sing	1.34Å	1.36Å
C02	O01	doub	1.22Å	1.22Å
N12	H1	sing	0.97Å	1.00Å
C05	H2	sing	1.08Å	1.08Å
C06	H3	sing	1.08Å	1.08Å
C07	H4	sing	1.08Å	1.08Å
C08	H5	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C06	C07	C08	121.2°	120.3°
C07	C06	C05	118.6°	120.6°
C07	C06	H3	120.7°	119.7°
C06	C07	H4	119.4°	119.9°
C07	C08	C09	119.7°	119.5°
C08	C07	H4	119.4°	119.8°
C07	C08	H5	120.1°	120.2°
C06	C05	C04	120.9°	119.8°
C06	C05	H2	119.5°	120.1°
C05	C06	H3	120.7°	119.7°
C08	C09	C04	119.6°	120.2°
C08	C09	C10	120.5°	121.6°
C09	C08	H5	120.1°	120.3°
C05	C04	C09	120.0°	119.6°
C05	C04	O03	121.3°	121.4°
C04	C05	H2	119.6°	120.1°
C04	C09	C10	119.9°	118.2°
C09	C04	O03	118.6°	119.1°
C09	C10	O11	120.2°	121.0°
C09	C10	N12	119.5°	117.9°
C04	O03	C02	121.2°	121.2°
O11	C10	N12	120.3°	121.1°
C10	N12	C02	121.0°	120.7°
C10	N12	H1	119.5°	119.6°
O03	C02	N12	119.7°	122.9°
O03	C02	O01	119.7°	118.6°
N12	C02	O01	120.6°	118.5°
C02	N12	H1	119.5°	119.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C06	C07	C08	H4	180.0°	180.0°
C07	C06	C05	H3	180.0°	179.9°
C06	C07	C08	C09	0.9°	0.1°
C07	C06	C05	C04	0.4°	0.1°
C07	C06	C05	H2	179.5°	180.0°
C06	C07	C08	H5	179.2°	180.0°
C08	C07	C06	C05	0.9°	0.1°
C07	C08	C09	H5	180.0°	179.9°
C07	C08	C09	C04	0.3°	0.1°
C07	C08	C09	C10	179.5°	180.0°
C08	C07	C06	H3	179.1°	180.0°
C06	C05	C04	H2	180.0°	179.9°
C06	C05	C04	C09	0.1°	0.1°
C06	C05	C04	O03	179.7°	180.0°
C05	C06	C07	H4	179.1°	179.9°
C08	C09	C04	C05	0.2°	0.1°
C08	C09	C04	C10	179.2°	179.9°
C08	C09	C04	O03	179.8°	180.0°
C08	C09	C10	O11	0.1°	0.2°
C08	C09	C10	N12	178.3°	180.0°
C09	C08	C07	H4	179.1°	179.9°
C05	C04	C09	O03	179.6°	179.9°
C05	C04	C09	C10	179.0°	180.0°
C05	C04	O03	C02	177.6°	180.0°
C04	C05	C06	H3	179.6°	180.0°
C04	C09	C10	O11	179.3°	179.7°
C04	C09	C10	N12	0.9°	0.1°
C09	C04	O03	C02	2.0°	0.0°
C09	C04	C05	H2	179.9°	180.0°
C04	C09	C08	H5	179.7°	180.0°
C10	C09	C04	O03	0.7°	0.1°
C09	C10	O11	N12	178.4°	179.8°
C09	C10	N12	C02	1.1°	0.0°
C09	C10	N12	H1	178.9°	179.9°
C10	C09	C08	H5	0.6°	0.1°
C04	O03	C02	N12	1.8°	0.0°
C04	O03	C02	O01	178.3°	180.0°
O03	C04	C05	H2	0.3°	0.1°
O11	C10	N12	C02	179.5°	179.7°
O11	C10	N12	H1	0.5°	0.3°
C10	N12	C02	O03	0.2°	0.0°
C10	N12	C02	H1	180.0°	180.0°
C10	N12	C02	O01	179.9°	180.0°
O03	C02	N12	O01	179.8°	180.0°
O03	C02	N12	H1	179.7°	180.0°
O01	C02	N12	H1	0.1°	0.0°
H2	C05	C06	H3	0.4°	0.1°
H3	C06	C07	H4	0.9°	0.0°
H4	C07	C08	H5	0.8°	0.1°

222624

PDB entries from 2024-07-17

PDB statistics

PDBj update info

Contact PDBj

numon