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SummaryGeometryRelated PDB entries

J9V

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O01C02doub1.22Å1.22Å
C02C07sing1.41Å1.47Å
C02N03sing1.34Å1.40Å
C07C06doub1.36Å1.35Å
N03C04sing1.38Å1.40Å
C06C05sing1.46Å1.47Å
C04C05doub1.41Å1.43ÅAromatic
C04C37sing1.39Å1.45ÅAromatic
C05C08sing1.40Å1.44ÅAromatic
C37C36doub1.38Å1.38ÅAromatic
C08C09doub1.37Å1.40ÅAromatic
C24C23doub1.33Å1.36ÅAromatic
C24S25sing1.76Å1.69ÅAromatic
C36C09sing1.39Å1.42ÅAromatic
C09S10sing1.76Å1.83Å
C23C22sing1.38Å1.45ÅAromatic
S25C21sing1.76Å1.72ÅAromatic
O35S10doub1.42Å1.42Å
O11S10doub1.42Å1.41Å
S10N12sing1.66Å1.66Å
C22C21doub1.33Å1.38ÅAromatic
C21C20sing1.51Å1.55Å
C16N15sing1.46Å1.49Å
C16C17sing1.51Å1.57Å
N12C13sing1.47Å1.48Å
O26C14doub1.21Å1.21Å
N15C14sing1.35Å1.42Å
N15C20sing1.46Å1.49Å
C14C13sing1.51Å1.58Å
C13C27sing1.51Å1.52Å
O19C17doub1.21Å1.24Å
C17O18sing1.34Å1.24Å
O29C30sing1.43Å1.42Å
O29C28sing1.36Å1.38Å
C27C28doub1.39Å1.43ÅAromatic
C27C34sing1.38Å1.40ÅAromatic
C28C31sing1.39Å1.40ÅAromatic
C34C33doub1.38Å1.40ÅAromatic
C31C32doub1.38Å1.39ÅAromatic
C33C32sing1.38Å1.39ÅAromatic
N12H121sing0.97Å1.00Å
C13H131sing1.09Å1.10Å
C20H202sing1.09Å1.10Å
C20H201sing1.09Å1.10Å
C22H221sing1.08Å1.08Å
C24H241sing1.08Å1.08Å
N03H031sing0.97Å1.00Å
C06H061sing1.08Å1.08Å
C07H071sing1.08Å1.08Å
C08H081sing1.08Å1.08Å
C16H162sing1.09Å1.10Å
C16H161sing1.09Å1.10Å
O18H1sing0.97Å0.95Å
C23H231sing1.08Å1.08Å
C30H302sing1.09Å1.10Å
C30H301sing1.09Å1.10Å
C30H303sing1.09Å1.10Å
C31H311sing1.08Å1.08Å
C32H321sing1.08Å1.08Å
C33H331sing1.08Å1.08Å
C34H341sing1.08Å1.08Å
C36H361sing1.08Å1.08Å
C37H371sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O01C02C07125.9°119.2°
O01C02N03118.5°119.2°
C07C02N03115.6°121.6°
C02C07C06120.0°120.3°
C02C07H071120.0°119.8°
C02N03C04125.7°121.0°
C02N03H031117.2°119.5°
C07C06C05124.1°118.5°
C07C06H061117.9°120.7°
C06C07H071120.0°119.9°
N03C04C05118.6°119.6°
N03C04C37124.6°121.0°
C04N03H031117.2°119.5°
C06C05C04116.0°119.0°
C06C05C08127.0°121.1°
C05C06H061118.0°120.7°
C05C04C37116.8°119.4°
C04C05C08117.0°119.9°
C04C37C36122.8°119.7°
C04C37H371118.6°120.2°
C05C08C09126.7°119.7°
C05C08H081116.6°120.1°
C37C36C09122.5°120.7°
C37C36H361118.7°119.7°
C36C37H371118.6°120.1°
C08C09C36114.1°120.6°
C08C09S10123.9°119.7°
C09C08H081116.7°120.1°
C23C24S25109.9°109.6°
C24C23C22112.3°114.9°
C23C24H241125.1°125.2°
C24C23H231123.9°122.5°
C24S25C2196.4°91.0°
S25C24H241125.0°125.2°
C36C09S10121.9°119.7°
C09C36H361118.8°119.7°
C09S10O35109.2°106.4°
C09S10O11107.4°106.4°
C09S10N12105.9°107.2°
C23C22C21114.8°114.9°
C23C22H221122.6°122.5°
C22C23H231123.9°122.6°
S25C21C22106.7°109.6°
S25C21C20122.5°125.2°
O35S10O11115.0°123.1°
O35S10N12108.5°106.4°
O11S10N12110.5°106.4°
S10N12C13121.1°120.0°
S10N12H121106.5°120.0°
C22C21C20130.8°125.2°
C21C22H221122.6°122.6°
C21C20N15114.0°109.5°
C21C20H202108.4°109.5°
C21C20H201108.3°109.4°
N15C16C17112.1°109.5°
C16N15C14120.6°120.0°
C16N15C20118.1°120.0°
N15C16H162108.8°109.4°
N15C16H161108.8°109.5°
C16C17O19114.5°120.0°
C16C17O18117.0°120.0°
C17C16H162108.8°109.5°
C17C16H161108.8°109.5°
N12C13C14109.3°109.5°
N12C13C27110.6°109.5°
C13N12H121106.5°120.0°
N12C13H131108.3°109.4°
O26C14N15121.0°120.0°
O26C14C13116.6°120.0°
C14N15C20121.2°120.0°
N15C14C13122.4°120.0°
N15C20H202108.3°109.5°
N15C20H201108.3°109.5°
C14C13C27113.4°109.5°
C14C13H131107.1°109.5°
C13C27C28120.4°120.1°
C13C27C34122.2°120.0°
C27C13H131107.8°109.5°
O19C17O18128.5°120.0°
C17O18H1109.5°117.0°
C30O29C28121.3°117.0°
O29C30H302109.5°109.4°
O29C30H301109.5°109.4°
O29C30H303109.4°109.4°
O29C28C27118.2°120.0°
O29C28C31122.1°120.1°
C28C27C34117.4°120.0°
C27C28C31119.7°119.9°
C27C34C33122.7°120.0°
C27C34H341118.7°120.0°
C28C31C32121.1°120.0°
C28C31H311119.4°120.0°
C34C33C32119.3°120.2°
C34C33H331120.4°119.9°
C33C34H341118.6°120.0°
C31C32C33119.8°120.0°
C32C31H311119.4°120.0°
C31C32H321120.1°120.0°
C33C32H321120.1°120.0°
C32C33H331120.4°119.9°
H202C20H201109.4°109.5°
H162C16H161109.5°109.5°
H302C30H301109.4°109.4°
H302C30H303109.5°109.5°
H301C30H303109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O01C02C07N03180.0°179.7°
O01C02C07C06180.0°179.7°
O01C02N03C04179.8°180.0°
O01C02N03H0310.2°0.0°
O01C02C07H0710.0°0.0°
C02C07C06H071180.0°179.7°
C07C02N03C040.2°0.3°
C02C07C06C050.1°0.5°
C07C02N03H031179.8°179.7°
C02C07C06H061179.9°179.7°
N03C02C07C060.0°0.6°
C02N03C04H031180.0°180.0°
C02N03C04C050.2°0.1°
C02N03C04C37179.9°180.0°
N03C02C07H071180.0°179.7°
C07C06C05H061180.0°179.8°
C07C06C05C040.1°0.3°
C07C06C05C08179.7°179.8°
N03C04C05C060.1°0.0°
N03C04C05C37179.7°180.0°
N03C04C05C08179.6°179.9°
N03C04C37C36179.6°180.0°
N03C04C37H3710.4°0.0°
C06C05C04C08179.6°179.9°
C06C05C04C37179.7°180.0°
C06C05C08C09179.0°180.0°
C05C06C07H071179.9°179.7°
C06C05C08H0811.0°0.1°
C05C04C37C360.1°0.1°
C04C05C08C091.4°0.1°
C05C04N03H031179.8°179.9°
C04C05C06H061179.9°179.9°
C04C05C08H081178.6°180.0°
C05C04C37H371179.9°180.0°
C37C04C05C080.1°0.1°
C04C37C36H371180.0°179.9°
C04C37C36C091.3°0.1°
C37C04N03H0310.1°0.0°
C04C37C36H361178.7°180.0°
C05C08C09H081180.0°179.9°
C05C08C09C362.4°0.1°
C05C08C09S10178.1°180.0°
C08C05C06H0610.3°0.0°
C37C36C09C082.3°0.1°
C37C36C09H361180.0°179.9°
C37C36C09S10178.0°180.0°
C08C09C36S10175.7°179.9°
C08C09S10O35132.2°156.5°
C08C09S10O116.9°23.5°
C08C09S10N12111.1°90.0°
C08C09C36H361177.7°180.0°
C23C24S25H241180.0°179.8°
C24C23C22H231180.0°179.7°
C23C24S25C210.5°0.3°
C24C23C22C210.1°0.0°
C24C23C22H221179.8°180.0°
S25C24C23C220.4°0.2°
C24S25C21C220.4°0.3°
C24S25C21C20179.9°179.9°
S25C24C23H231179.5°180.0°
C36C09S10O3552.5°23.6°
C36C09S10O11177.8°156.5°
C36C09S10N1264.2°89.9°
C36C09C08H081177.6°180.0°
C09C36C37H371178.7°180.0°
C09S10O35O11120.8°122.9°
C09S10O35N12115.0°114.1°
C09S10O11N12115.0°114.1°
C09S10N12C1370.3°65.0°
C09S10N12H12151.4°114.7°
S10C09C08H0811.9°0.1°
S10C09C36H3612.0°0.1°
C23C22C21S250.2°0.3°
C23C22C21H221180.0°180.0°
C23C22C21C20179.9°180.0°
C22C23C24H241179.6°180.0°
S25C21C22C20179.7°179.7°
S25C21C20N1570.0°90.3°
S25C21C20H202169.3°29.7°
S25C21C20H20150.6°149.7°
S25C21C22H221179.8°179.7°
C21S25C24H241179.5°179.9°
O35S10O11N12123.2°122.9°
O35S10N12C13172.6°48.6°
O35S10N12H12165.8°131.7°
O11S10N12C1345.7°178.5°
O11S10N12H121167.3°1.2°
S10N12C13H121121.6°179.7°
S10N12C13C1492.6°145.3°
S10N12C13C27141.8°94.7°
S10N12C13H13123.8°25.3°
C22C21C20N15110.3°90.0°
C22C21C20H20210.3°150.0°
C22C21C20H201129.0°30.0°
C21C22C23H231179.8°179.7°
C21C20N15C1688.7°90.0°
C21C20N15C1489.5°90.0°
C21C20N15H202120.7°120.0°
C21C20N15H201120.7°120.0°
C21C20H202H201118.0°120.0°
C20C21C22H2210.1°0.0°
N15C16C17H162120.4°119.9°
N15C16C17H161120.4°120.0°
C16N15C14O260.7°174.7°
C16N15C14C20178.3°180.0°
C16N15C14C13179.1°5.2°
N15C16C17O19167.6°5.1°
N15C16C17O1812.0°174.9°
C16N15C20H202150.6°150.0°
C16N15C20H20131.9°30.0°
N15C16H162H161118.8°120.0°
C17C16N15C1488.4°86.2°
C17C16N15C2093.2°93.8°
C16C17O19O18179.6°180.0°
C17C16H162H161118.8°120.0°
C16C17O18H1179.6°180.0°
N12C13C14O2625.0°45.8°
N12C13C14N15154.8°134.2°
N12C13C14C27123.9°120.1°
N12C13C14H131117.2°120.0°
N12C13C27H131118.3°120.0°
N12C13C27C28109.4°152.2°
N12C13C27C3469.2°27.8°
O26C14N15C13179.8°180.0°
O26C14N15C20179.0°5.2°
O26C14C13C2798.9°74.3°
O26C14C13H131142.2°165.7°
N15C14C13C2781.3°105.7°
N15C14C13H13137.6°14.2°
C14N15C20H20231.1°30.0°
C14N15C20H201149.8°150.0°
C14N15C16H162151.2°33.8°
C14N15C16H16131.9°153.8°
C20N15C14C130.8°174.8°
N15C20H202H201117.9°120.0°
C20N15C16H16227.1°146.2°
C20N15C16H161146.4°26.2°
C14C13C27H131118.5°120.0°
C14C13C27C28127.4°87.8°
C14C13C27C3454.0°92.2°
C14C13N12H12129.1°35.0°
C13C27C28O290.8°0.3°
C13C27C28C34178.7°180.0°
C13C27C28C31178.5°180.0°
C13C27C34C33179.1°180.0°
C27C13N12H12196.5°85.0°
C13C27C34H3410.9°0.0°
O19C17C16H16272.0°125.1°
O19C17C16H16147.2°114.9°
O19C17O18H10.0°0.0°
O18C17C16H162108.3°54.9°
O18C17C16H161132.4°65.1°
C30O29C28C27167.2°174.4°
C30O29C28C3113.6°5.3°
O29C30H302H301120.0°119.9°
O29C30H302H303120.0°120.0°
O29C30H301H303120.0°120.0°
O29C28C27C31179.3°179.7°
O29C28C27C34179.4°179.7°
O29C28C31C32179.9°179.7°
C28O29C30H302180.0°55.2°
C28O29C30H30160.0°64.8°
C28O29C30H30360.0°175.2°
O29C28C31H3110.1°0.3°
C28C27C34C330.4°0.0°
C27C28C31C320.7°0.0°
C28C27C13H1318.9°32.2°
C27C28C31H311179.3°180.0°
C28C27C34H341179.6°180.0°
C34C27C28C310.2°0.0°
C27C34C33H341180.0°180.0°
C27C34C33C320.5°0.0°
C34C27C13H131172.5°147.8°
C27C34C33H331179.4°180.0°
C28C31C32H311180.0°180.0°
C28C31C32C330.6°0.0°
C28C31C32H321179.5°180.0°
C34C33C32C310.0°0.0°
C34C33C32H331180.0°179.9°
C34C33C32H321179.9°180.0°
C31C32C33H321180.0°180.0°
C31C32C33H331180.0°179.9°
C33C32C31H311179.4°180.0°
C32C33C34H341179.5°180.0°
H121N12C13H131145.5°155.0°
H221C22C23H2310.2°0.3°
H241C24C23H2310.5°0.2°
H061C06C07H0710.1°0.1°
H302C30H301H303120.0°120.1°
H311C31C32H3210.6°0.0°
H321C32C33H3310.1°0.1°
H331C33C34H3410.6°0.0°
H361C36C37H3711.3°0.1°

222415

PDB entries from 2024-07-10

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