Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

J8D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2C4sing1.36Å1.35Å
O3C7doub1.22Å1.23Å
C4C3doub1.38Å1.39ÅAromatic
C4C5sing1.40Å1.40ÅAromatic
C3C2sing1.39Å1.39ÅAromatic
C7C5sing1.47Å1.41Å
C7C8sing1.42Å1.39Å
C5C6doub1.40Å1.40ÅAromatic
C2O1sing1.36Å1.36Å
C2C1doub1.39Å1.39ÅAromatic
C8C9doub1.36Å1.40Å
C6C1sing1.39Å1.39ÅAromatic
C6O4sing1.35Å1.37Å
C9O4sing1.34Å1.37Å
C9C10sing1.48Å1.40Å
C10C15doub1.40Å1.41ÅAromatic
C10C11sing1.40Å1.40ÅAromatic
C15C14sing1.38Å1.40ÅAromatic
C11C12doub1.38Å1.39ÅAromatic
C14C13doub1.39Å1.40ÅAromatic
C12C13sing1.40Å1.40ÅAromatic
C12O5sing1.36Å1.36Å
C13O6sing1.36Å1.38Å
O6C01sing1.43Å1.44Å
C01H1sing1.09Å1.10Å
C01H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C11H4sing1.08Å1.08Å
O5H5sing0.97Å0.95Å
C14H6sing1.08Å1.08Å
C15H7sing1.08Å1.08Å
C1H8sing1.08Å1.08Å
O1H9sing0.97Å0.95Å
C3H10sing1.08Å1.08Å
O2H11sing0.97Å0.95Å
C8H12sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2C4C3119.6°120.3°
O2C4C5118.6°120.3°
C4O2H11109.5°114.1°
O3C7C5121.7°121.3°
O3C7C8118.3°121.3°
C3C4C5121.9°119.5°
C4C3C2120.1°120.2°
C4C3H10120.0°119.9°
C4C5C7123.1°121.3°
C4C5C6117.1°120.2°
C3C2O1119.5°119.7°
C3C2C1119.3°120.6°
C2C3H10119.9°119.9°
C5C7C8119.9°117.4°
C7C5C6119.8°118.5°
C7C8C9119.3°119.5°
C7C8H12120.4°120.3°
C5C6C1121.3°119.5°
C5C6O4119.3°119.8°
O1C2C1121.2°119.7°
C2O1H9109.5°114.0°
C2C1C6120.3°120.0°
C2C1H8119.9°120.0°
C8C9O4120.2°122.5°
C8C9C10124.8°118.7°
C9C8H12120.4°120.2°
C1C6O4119.4°120.8°
C6C1H8119.8°120.0°
C6O4C9121.5°122.3°
O4C9C10114.9°118.8°
C9C10C15122.2°120.1°
C9C10C11119.7°120.1°
C15C10C11118.1°119.8°
C10C15C14121.2°120.0°
C10C15H7119.4°120.0°
C10C11C12120.7°119.9°
C10C11H4119.7°120.0°
C15C14C13120.1°120.2°
C15C14H6119.9°119.9°
C14C15H7119.4°120.0°
C11C12C13121.4°120.0°
C11C12O5120.9°120.0°
C12C11H4119.7°120.1°
C14C13C12118.6°120.1°
C14C13O6125.7°120.0°
C13C14H6120.0°119.9°
C13C12O5117.7°120.0°
C12C13O6115.7°119.9°
C12O5H5109.5°114.0°
C13O6C01118.2°117.0°
O6C01H1109.5°109.5°
O6C01H2109.4°109.5°
O6C01H3109.5°109.5°
H1C01H2109.4°109.5°
H1C01H3109.5°109.5°
H2C01H3109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2C4C3C5179.8°179.8°
O2C4C3C2179.8°180.0°
O2C4C5C70.1°0.1°
O2C4C5C6179.4°180.0°
O2C4C3H100.2°0.1°
O3C7C5C44.6°0.0°
O3C7C5C8176.3°179.7°
O3C7C5C6176.1°179.9°
O3C7C8C9177.3°179.7°
O3C7C8H122.7°0.2°
C4C3C2H10180.0°179.9°
C3C4C5C7179.9°180.0°
C3C4C5C60.8°0.1°
C4C3C2O1179.9°179.9°
C4C3C2C10.1°0.1°
C3C4O2H11178.0°89.9°
C5C4C3C20.4°0.1°
C4C5C7C6179.3°179.9°
C4C5C7C8179.2°179.8°
C4C5C6C10.8°0.1°
C4C5C6O4178.8°180.0°
C5C4C3H10179.6°180.0°
C5C4O2H111.8°89.9°
C3C2O1C1179.8°180.0°
C3C2C1C60.1°0.0°
C3C2C1H8179.9°180.0°
C3C2O1H9180.0°89.9°
C5C7C8C90.9°0.6°
C7C5C6C1179.9°180.0°
C7C5C6O40.5°0.1°
C5C7C8H12179.1°180.0°
C8C7C5C60.1°0.4°
C7C8C9H12180.0°179.4°
C7C8C9O41.6°0.6°
C7C8C9C10177.7°179.7°
C5C6C1C20.5°0.0°
C5C6C1O4179.7°180.0°
C5C6O4C90.2°0.0°
C5C6C1H8179.5°180.0°
O1C2C1C6179.9°180.0°
O1C2C1H80.1°0.1°
O1C2C3H100.1°0.1°
C2C1C6H8180.0°179.9°
C2C1C6O4179.2°180.0°
C1C2O1H90.2°90.0°
C1C2C3H10180.0°180.0°
C8C9O4C61.2°0.3°
C8C9O4C10179.4°179.7°
C8C9C10C1527.1°0.3°
C8C9C10C11154.5°179.4°
C1C6O4C9179.4°180.0°
C6O4C9C10178.1°180.0°
O4C6C1H80.9°0.1°
O4C9C10C15152.3°180.0°
O4C9C10C1126.2°0.2°
O4C9C8H12178.4°180.0°
C9C10C15C11178.4°179.7°
C9C10C15C14179.3°180.0°
C9C10C11C12179.4°180.0°
C9C10C11H40.6°0.0°
C9C10C15H70.7°0.0°
C10C9C8H122.3°0.3°
C10C15C14H7180.0°180.0°
C15C10C11C121.0°0.3°
C10C15C14C130.7°0.0°
C15C10C11H4179.0°179.7°
C10C15C14H6179.3°180.0°
C11C10C15C140.8°0.3°
C10C11C12H4180.0°180.0°
C10C11C12C131.0°0.0°
C10C11C12O5179.5°179.9°
C11C10C15H7179.2°179.7°
C15C14C13H6180.0°179.9°
C15C14C13C120.6°0.3°
C15C14C13O6179.6°180.0°
C11C12C13C140.8°0.3°
C11C12C13O5179.6°179.9°
C11C12C13O6179.9°180.0°
C11C12O5H5180.0°90.0°
C14C13C12O6179.1°179.7°
C14C13C12O5179.7°179.8°
C14C13O6C0118.9°0.3°
C13C14C15H7179.3°180.0°
C12C13O6C01162.0°180.0°
C13C12C11H4179.0°179.9°
C13C12O5H50.4°90.1°
C12C13C14H6179.4°179.6°
O5C12C13O60.5°0.1°
O5C12C11H40.5°0.0°
C13O6C01H1180.0°180.0°
C13O6C01H260.0°60.0°
C13O6C01H360.0°60.0°
O6C13C14H60.4°0.0°
O6C01H1H2120.0°120.0°
O6C01H1H3120.0°120.0°
O6C01H2H3120.0°120.0°
H1C01H2H3120.0°120.0°
H6C14C15H70.7°0.1°

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon