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SummaryGeometryRelated PDB entries

J87

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C24O25sing1.43Å1.41Å
C24C23sing1.53Å1.51Å
O25C26sing1.43Å1.41Å
C23N22sing1.47Å1.43Å
C20C19doub1.38Å1.39ÅAromatic
C20C21sing1.39Å1.39ÅAromatic
O18C06doub1.22Å1.21Å
C19C04sing1.39Å1.38ÅAromatic
C26C27sing1.53Å1.52Å
N22C27sing1.47Å1.43Å
N22C21sing1.40Å1.42Å
C21C28doub1.39Å1.38ÅAromatic
C06N05sing1.35Å1.42Å
C06C07sing1.47Å1.53Å
C04N05sing1.40Å1.43Å
C04C03doub1.39Å1.39ÅAromatic
C08C07doub1.37Å1.46ÅAromatic
C08N09sing1.31Å1.53ÅAromatic
C28C03sing1.38Å1.38ÅAromatic
C07S17sing1.76Å1.56ÅAromatic
C03O02sing1.36Å1.41Å
N09C10doub1.30Å1.41ÅAromatic
S17C10sing1.71Å1.58ÅAromatic
O02C01sing1.43Å1.41Å
C10C11sing1.48Å1.51Å
C11C16doub1.40Å1.37ÅAromatic
C11C12sing1.40Å1.37ÅAromatic
C16N15sing1.32Å1.35ÅAromatic
C12C13doub1.38Å1.38ÅAromatic
N15C14doub1.32Å1.36ÅAromatic
C13C14sing1.38Å1.40ÅAromatic
C13H131sing1.08Å1.08Å
C20H201sing1.08Å1.08Å
C24H241sing1.09Å1.10Å
C24H242sing1.09Å1.10Å
C26H261sing1.09Å1.10Å
C26H262sing1.09Å1.10Å
C28H281sing1.08Å1.08Å
C01H011sing1.09Å1.10Å
C01H012sing1.09Å1.10Å
C01H013sing1.09Å1.10Å
N05H051sing0.97Å1.00Å
C08H081sing1.08Å1.08Å
C12H121sing1.08Å1.08Å
C14H141sing1.08Å1.08Å
C16H161sing1.08Å1.08Å
C19H191sing1.08Å1.08Å
C23H232sing1.09Å1.10Å
C23H231sing1.09Å1.10Å
C27H272sing1.09Å1.10Å
C27H271sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O25C24C23110.7°109.3°
C24O25C26111.1°113.7°
O25C24H241109.1°109.6°
O25C24H242109.1°109.5°
C24C23N22111.3°109.3°
C23C24H241109.2°109.5°
C23C24H242109.1°109.5°
C24C23H232109.0°109.6°
C24C23H231109.0°109.5°
O25C26C27110.8°109.3°
O25C26H261109.2°109.5°
O25C26H262109.2°109.5°
C23N22C27118.6°110.8°
C23N22C21116.4°111.0°
N22C23H232109.0°109.5°
N22C23H231109.0°109.5°
C19C20C21120.9°120.0°
C20C19C04119.2°120.1°
C19C20H201119.6°120.0°
C20C19H191120.4°119.9°
C20C21N22120.3°119.9°
C20C21C28119.6°120.0°
C21C20H201119.6°120.0°
O18C06N05121.4°120.0°
O18C06C07125.1°120.0°
C19C04N05124.9°120.0°
C19C04C03120.0°120.0°
C04C19H191120.4°120.0°
C26C27N22114.5°109.3°
C27C26H261109.2°109.5°
C27C26H262109.1°109.5°
C26C27H272108.2°109.5°
C26C27H271108.2°109.5°
C27N22C21116.0°111.1°
N22C27H272108.2°109.5°
N22C27H271108.2°109.5°
N22C21C28120.0°120.0°
C21C28C03119.4°120.0°
C21C28H281120.3°120.0°
N05C06C07113.5°120.0°
C06N05C04127.9°120.0°
C06N05H051116.1°120.0°
C06C07C08134.3°126.1°
C06C07S17117.8°126.1°
N05C04C03115.0°120.0°
C04N05H051116.0°120.0°
C04C03C28120.9°119.9°
C04C03O02117.3°120.1°
C07C08N09109.5°114.0°
C08C07S17107.8°107.7°
C07C08H081125.3°123.0°
C08N09C10108.1°117.3°
N09C08H081125.3°123.0°
C28C03O02121.8°120.1°
C03C28H281120.3°120.0°
C07S17C10103.4°90.4°
C03O02C01117.1°117.0°
N09C10S17110.3°110.5°
N09C10C11130.7°124.8°
S17C10C11116.8°124.8°
O02C01H011109.5°109.5°
O02C01H012109.4°109.4°
O02C01H013109.5°109.4°
C10C11C16122.3°120.6°
C10C11C12118.1°120.6°
C16C11C12119.6°118.9°
C11C16N15121.1°120.6°
C11C16H161119.5°119.7°
C11C12C13120.0°118.3°
C11C12H121120.0°120.8°
C16N15C14120.4°121.9°
N15C16H161119.4°119.7°
C12C13C14119.3°119.3°
C12C13H131120.4°120.4°
C13C12H121120.0°120.9°
N15C14C13119.6°121.1°
N15C14H141120.2°119.5°
C14C13H131120.3°120.3°
C13C14H141120.2°119.4°
H241C24H242109.5°109.5°
H261C26H262109.4°109.4°
H011C01H012109.5°109.5°
H011C01H013109.5°109.5°
H012C01H013109.5°109.4°
H232C23H231109.5°109.5°
H272C27H271109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O25C24C23H241120.2°120.0°
O25C24C23H242120.2°119.9°
O25C24C23N2252.0°56.8°
C24O25C26C2759.2°58.6°
O25C24H241H242119.4°120.1°
C24O25C26H261179.4°178.6°
C24O25C26H26261.0°61.3°
O25C24C23H232172.3°176.8°
O25C24C23H23168.3°63.1°
C23C24O25C2664.9°58.6°
C24C23N22H232120.3°120.0°
C24C23N22H231120.3°119.9°
C24C23N22C2737.6°58.5°
C24C23N22C21176.5°177.6°
C23C24H241H242119.5°120.0°
C24C23H232H231119.2°120.1°
O25C26C27H261120.2°120.0°
O25C26C27H262120.2°120.0°
O25C26C27N2242.7°56.8°
C26O25C24H24155.3°178.6°
C26O25C24H242174.9°61.3°
O25C26H261H262119.4°120.1°
O25C26C27H27278.0°63.1°
O25C26C27H271163.5°176.8°
C23N22C21C2032.2°123.7°
C23N22C27C2633.8°58.5°
C23N22C27C21146.0°123.9°
C23N22C21C28149.7°56.3°
N22C23C24H24168.2°176.8°
N22C23C24H242172.1°63.2°
N22C23H232H231119.1°120.1°
C23N22C27H27287.0°61.4°
C23N22C27H271154.5°178.5°
C19C20C21H201180.0°179.8°
C20C19C04H191180.0°180.0°
C19C20C21N22179.2°180.0°
C19C20C21C281.1°0.0°
C20C19C04N05179.5°180.0°
C20C19C04C030.8°0.0°
C21C20C19C040.8°0.0°
C20C21N22C27114.5°0.1°
C20C21N22C28178.1°179.9°
C20C21C28C031.4°0.0°
C20C21C28H281178.7°180.0°
C21C20C19H191179.2°180.0°
O18C06N05C07179.4°180.0°
O18C06N05C041.5°5.5°
O18C06C07C088.3°0.2°
O18C06C07S17168.0°179.9°
O18C06N05H051178.5°174.5°
C19C04N05C066.4°24.8°
C19C04N05C03178.8°179.9°
C19C04C03C281.1°0.0°
C19C04C03O02179.6°180.0°
C04C19C20H201179.1°179.8°
C19C04N05H051173.6°155.2°
C26C27N22H272120.7°119.9°
C26C27N22H271120.7°120.0°
C26C27N22C21179.7°177.6°
C27C26H261H262119.4°120.1°
C26C27H272H271117.7°120.1°
C27N22C21C2863.5°180.0°
N22C27C26H261163.0°176.8°
N22C27C26H26277.5°63.2°
C27N22C23H232157.9°178.5°
C27N22C23H23182.6°61.4°
N22C27H272H271117.7°120.1°
N22C21C28C03179.5°180.0°
N22C21C20H2010.8°0.2°
N22C21C28H2810.6°0.1°
C21N22C23H23256.2°57.6°
C21N22C23H23163.2°62.5°
C21N22C27H27259.0°62.5°
C21N22C27H27159.5°57.6°
C21C28C03C041.3°0.0°
C21C28C03H281180.0°180.0°
C21C28C03O02179.3°180.0°
C28C21C20H201178.8°179.8°
C06N05C04H051180.0°180.0°
C06N05C04C03174.8°155.2°
N05C06C07C08172.3°179.8°
N05C06C07S1711.4°0.1°
C07C06N05C04179.1°174.5°
C06C07C08S17176.6°179.8°
C06C07C08N09177.6°179.9°
C06C07S17C10172.5°180.0°
C07C06N05H0510.9°5.5°
C06C07C08H0812.4°0.1°
N05C04C03C28179.9°180.0°
N05C04C03O020.7°0.1°
N05C04C19H1910.5°0.0°
C04C03C28O02179.4°179.9°
C04C03O02C01173.7°180.0°
C04C03C28H281178.7°179.9°
C03C04N05H0515.2°24.8°
C03C04C19H191179.2°180.0°
C07C08N09H081180.0°180.0°
C07C08N09C107.1°0.0°
C08C07S17C104.7°0.2°
N09C08C07S171.0°0.2°
C08N09C10S1710.2°0.2°
C08N09C10C11172.7°180.0°
C28C03O02C015.7°0.0°
C07S17C10N099.4°0.2°
C07S17C10C11174.6°180.0°
S17C07C08H081179.0°179.9°
O02C03C28H2810.7°0.0°
C03O02C01H011180.0°179.9°
C03O02C01H01260.0°60.0°
C03O02C01H01360.0°59.9°
N09C10S17C11165.2°179.8°
N09C10C11C1623.7°180.0°
N09C10C11C12157.1°0.9°
C10N09C08H081172.9°180.0°
S17C10C11C16174.7°0.2°
S17C10C11C124.5°178.9°
O02C01H011H012120.0°120.0°
O02C01H011H013120.0°120.0°
O02C01H012H013120.0°119.9°
C10C11C16C12179.2°179.1°
C10C11C16N15179.7°179.9°
C10C11C12C13179.8°179.7°
C10C11C12H1210.2°0.3°
C10C11C16H1610.3°0.9°
C11C16N15H161180.0°179.2°
C16C11C12C130.5°0.6°
C11C16N15C140.3°0.6°
C16C11C12H121179.5°179.4°
C12C11C16N150.4°0.8°
C11C12C13H121180.0°180.0°
C11C12C13C140.5°0.1°
C11C12C13H131179.5°179.7°
C12C11C16H161179.6°180.0°
C16N15C14C130.3°0.1°
C16N15C14H141179.7°179.9°
C12C13C14N150.4°0.2°
C12C13C14H131180.0°179.8°
C12C13C14H141179.6°179.7°
N15C14C13H141180.0°179.9°
N15C14C13H131179.6°180.0°
C14N15C16H161179.7°179.8°
C14C13C12H121179.5°179.9°
H131C13C12H1210.5°0.3°
H131C13C14H1410.4°0.1°
H201C20C19H1910.9°0.2°
H241C24C23H23252.1°63.2°
H241C24C23H231171.6°56.9°
H242C24C23H23267.6°56.8°
H242C24C23H23151.9°177.0°
H261C26C27H27242.2°56.9°
H261C26C27H27176.3°63.2°
H262C26C27H272161.8°176.9°
H262C26C27H27143.3°56.8°
H011C01H012H013120.0°120.0°

219140

PDB entries from 2024-05-01

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