J7D
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O07 | C | doub | 1.21Å | 1.18Å | |
| O02 | P | doub | 1.48Å | 1.42Å | |
| O | P | sing | 1.61Å | 1.44Å | |
| C | N | sing | 1.35Å | 1.40Å | |
| P | O01 | sing | 1.61Å | 1.41Å | |
| P | O03 | sing | 1.61Å | 1.49Å | |
| N | O06 | sing | 1.42Å | 1.27Å | |
| N | C05 | sing | 1.46Å | 1.44Å | |
| C01 | O03 | sing | 1.43Å | 1.36Å | |
| C01 | C02 | sing | 1.53Å | 1.49Å | |
| C04 | O19 | sing | 1.43Å | 1.31Å | |
| C04 | C05 | sing | 1.53Å | 1.46Å | |
| C04 | C03 | sing | 1.53Å | 1.52Å | |
| O23 | C03 | sing | 1.43Å | 1.32Å | |
| C03 | C02 | sing | 1.53Å | 1.50Å | |
| C02 | O04 | sing | 1.43Å | 1.34Å | |
| O01 | H1 | sing | 0.97Å | 0.95Å | |
| O | H2 | sing | 0.97Å | 0.95Å | |
| C01 | H3 | sing | 1.09Å | 1.10Å | |
| C01 | H4 | sing | 1.09Å | 1.10Å | |
| C02 | H01 | sing | 1.09Å | 1.10Å | |
| O04 | H5 | sing | 0.97Å | 0.95Å | |
| C03 | H9 | sing | 1.09Å | 1.10Å | |
| C04 | H16 | sing | 1.09Å | 1.10Å | |
| C05 | H6 | sing | 1.09Å | 1.10Å | |
| C05 | H7 | sing | 1.09Å | 1.10Å | |
| O06 | H8 | sing | 0.97Å | 0.95Å | |
| C | H10 | sing | 1.08Å | 1.08Å | |
| O19 | H11 | sing | 0.97Å | 0.95Å | |
| O23 | H12 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O07 | C | N | 120.5° | 120.0° |
| O07 | C | H10 | 119.7° | 120.1° |
| O02 | P | O | 106.3° | 109.5° |
| O02 | P | O01 | 109.2° | 109.5° |
| O02 | P | O03 | 105.9° | 109.4° |
| O | P | O01 | 114.7° | 109.5° |
| O | P | O03 | 108.0° | 109.5° |
| P | O | H2 | 109.5° | 114.0° |
| C | N | O06 | 121.4° | 120.0° |
| C | N | C05 | 118.8° | 120.0° |
| N | C | H10 | 119.7° | 119.9° |
| O01 | P | O03 | 112.2° | 109.5° |
| P | O01 | H1 | 109.5° | 114.0° |
| P | O03 | C01 | 122.9° | 123.0° |
| O06 | N | C05 | 119.8° | 120.0° |
| N | O06 | H8 | 109.5° | 114.0° |
| N | C05 | C04 | 116.6° | 109.4° |
| N | C05 | H6 | 107.7° | 109.5° |
| N | C05 | H7 | 107.7° | 109.5° |
| O03 | C01 | C02 | 118.5° | 109.5° |
| O03 | C01 | H3 | 107.2° | 109.5° |
| O03 | C01 | H4 | 107.2° | 109.5° |
| C01 | C02 | C03 | 118.8° | 109.5° |
| C01 | C02 | O04 | 109.3° | 109.5° |
| C02 | C01 | H3 | 107.2° | 109.4° |
| C02 | C01 | H4 | 107.2° | 109.5° |
| C01 | C02 | H01 | 106.8° | 109.4° |
| O19 | C04 | C05 | 105.6° | 109.5° |
| O19 | C04 | C03 | 109.0° | 109.5° |
| O19 | C04 | H16 | 111.8° | 109.5° |
| C04 | O19 | H11 | 109.5° | 114.0° |
| C05 | C04 | C03 | 112.3° | 109.4° |
| C05 | C04 | H16 | 109.5° | 109.4° |
| C04 | C05 | H6 | 107.7° | 109.4° |
| C04 | C05 | H7 | 107.7° | 109.5° |
| C04 | C03 | O23 | 111.7° | 109.5° |
| C04 | C03 | C02 | 114.8° | 109.5° |
| C04 | C03 | H9 | 105.1° | 109.5° |
| C03 | C04 | H16 | 108.7° | 109.5° |
| O23 | C03 | C02 | 111.9° | 109.5° |
| O23 | C03 | H9 | 107.4° | 109.5° |
| C03 | O23 | H12 | 109.5° | 113.9° |
| C03 | C02 | O04 | 106.3° | 109.5° |
| C03 | C02 | H01 | 106.7° | 109.4° |
| C02 | C03 | H9 | 105.2° | 109.4° |
| O04 | C02 | H01 | 108.7° | 109.5° |
| C02 | O04 | H5 | 109.5° | 114.0° |
| H3 | C01 | H4 | 109.5° | 109.4° |
| H6 | C05 | H7 | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O07 | C | N | H10 | 180.0° | 180.0° |
| O07 | C | N | O06 | 2.0° | 0.0° |
| O07 | C | N | C05 | 178.8° | 180.0° |
| O02 | P | O | O01 | 120.8° | 120.0° |
| O02 | P | O | O03 | 113.3° | 119.9° |
| O02 | P | O01 | O03 | 117.1° | 120.0° |
| O02 | P | O03 | C01 | 75.4° | 55.0° |
| O02 | P | O01 | H1 | 0.0° | 60.1° |
| O02 | P | O | H2 | 0.0° | 180.0° |
| O | P | O01 | O03 | 123.7° | 120.0° |
| O | P | O03 | C01 | 38.2° | 64.9° |
| O | P | O01 | H1 | 119.2° | 59.9° |
| C | N | O06 | C05 | 179.2° | 180.0° |
| C | N | C05 | C04 | 93.3° | 75.0° |
| C | N | C05 | H6 | 27.8° | 45.0° |
| C | N | C05 | H7 | 145.7° | 165.0° |
| C | N | O06 | H8 | 0.9° | 0.1° |
| O01 | P | O03 | C01 | 165.5° | 175.0° |
| O01 | P | O | H2 | 120.8° | 60.0° |
| P | O03 | C01 | C02 | 145.9° | 180.0° |
| O03 | P | O01 | H1 | 117.1° | 180.0° |
| O03 | P | O | H2 | 113.3° | 60.0° |
| P | O03 | C01 | H3 | 92.9° | 60.1° |
| P | O03 | C01 | H4 | 24.6° | 60.0° |
| O06 | N | C05 | C04 | 87.5° | 105.0° |
| O06 | N | C05 | H6 | 151.4° | 135.0° |
| O06 | N | C05 | H7 | 33.5° | 15.0° |
| O06 | N | C | H10 | 178.0° | 180.0° |
| N | C05 | C04 | O19 | 59.9° | 60.0° |
| N | C05 | C04 | H6 | 121.1° | 119.9° |
| N | C05 | C04 | H7 | 121.0° | 120.1° |
| N | C05 | C04 | C03 | 178.5° | 180.0° |
| N | C05 | C04 | H16 | 60.6° | 60.1° |
| N | C05 | H6 | H7 | 116.8° | 120.0° |
| C05 | N | O06 | H8 | 179.9° | 180.0° |
| C05 | N | C | H10 | 1.2° | 0.0° |
| O03 | C01 | C02 | H3 | 121.3° | 120.0° |
| O03 | C01 | C02 | H4 | 121.3° | 120.1° |
| O03 | C01 | C02 | C03 | 178.4° | 175.0° |
| O03 | C01 | C02 | O04 | 59.5° | 65.0° |
| O03 | C01 | H3 | H4 | 115.9° | 120.1° |
| O03 | C01 | C02 | H01 | 57.9° | 55.1° |
| C01 | C02 | C03 | C04 | 69.7° | 180.0° |
| C01 | C02 | C03 | O23 | 59.0° | 60.0° |
| C01 | C02 | C03 | O04 | 123.5° | 120.0° |
| C01 | C02 | C03 | H01 | 120.6° | 119.9° |
| C01 | C02 | O04 | H01 | 116.2° | 120.0° |
| C02 | C01 | H3 | H4 | 115.9° | 119.9° |
| C01 | C02 | O04 | H5 | 180.0° | 60.0° |
| C01 | C02 | C03 | H9 | 175.3° | 60.1° |
| O19 | C04 | C05 | C03 | 118.7° | 120.0° |
| O19 | C04 | C05 | H16 | 120.5° | 120.0° |
| O19 | C04 | C03 | H16 | 122.1° | 120.0° |
| O19 | C04 | C03 | O23 | 178.5° | 180.0° |
| O19 | C04 | C03 | C02 | 49.7° | 60.0° |
| O19 | C04 | C03 | H9 | 65.5° | 60.0° |
| O19 | C04 | C05 | H6 | 179.1° | 60.0° |
| O19 | C04 | C05 | H7 | 61.2° | 180.0° |
| C05 | C04 | C03 | H16 | 121.3° | 119.9° |
| C05 | C04 | C03 | O23 | 64.9° | 60.0° |
| C05 | C04 | C03 | C02 | 166.3° | 180.0° |
| C05 | C04 | C03 | H9 | 51.2° | 60.1° |
| C04 | C05 | H6 | H7 | 116.8° | 120.0° |
| C05 | C04 | O19 | H11 | 180.0° | 60.1° |
| C04 | C03 | O23 | C02 | 130.3° | 120.0° |
| C04 | C03 | O23 | H9 | 114.7° | 120.0° |
| C04 | C03 | C02 | H9 | 115.0° | 120.0° |
| C04 | C03 | C02 | O04 | 166.7° | 60.0° |
| C04 | C03 | C02 | H01 | 50.9° | 60.0° |
| C03 | C04 | C05 | H6 | 60.4° | 60.0° |
| C03 | C04 | C05 | H7 | 57.5° | 60.0° |
| C03 | C04 | O19 | H11 | 59.2° | 59.9° |
| C04 | C03 | O23 | H12 | 180.0° | 60.0° |
| O23 | C03 | C02 | H9 | 116.3° | 120.0° |
| O23 | C03 | C02 | O04 | 64.6° | 180.0° |
| O23 | C03 | C02 | H01 | 179.6° | 60.0° |
| O23 | C03 | C04 | H16 | 56.4° | 60.0° |
| C03 | C02 | O04 | H01 | 114.5° | 120.0° |
| C03 | C02 | C01 | H3 | 60.3° | 65.0° |
| C03 | C02 | C01 | H4 | 57.1° | 54.9° |
| C03 | C02 | O04 | H5 | 50.7° | 60.0° |
| C02 | C03 | C04 | H16 | 72.5° | 60.1° |
| C02 | C03 | O23 | H12 | 49.7° | 60.0° |
| O04 | C02 | C01 | H3 | 61.7° | 55.0° |
| O04 | C02 | C01 | H4 | 179.2° | 175.0° |
| O04 | C02 | C03 | H9 | 51.7° | 60.0° |
| H3 | C01 | C02 | H01 | 179.1° | 175.0° |
| H4 | C01 | C02 | H01 | 63.4° | 65.0° |
| H01 | C02 | O04 | H5 | 63.8° | 180.0° |
| H01 | C02 | C03 | H9 | 64.1° | 180.0° |
| H9 | C03 | C04 | H16 | 172.4° | 180.0° |
| H9 | C03 | O23 | H12 | 65.3° | 180.0° |
| H16 | C04 | C05 | H6 | 60.4° | 180.0° |
| H16 | C04 | C05 | H7 | 178.3° | 60.0° |
| H16 | C04 | O19 | H11 | 61.0° | 179.9° |
