English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

J64

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C2	doub	1.21Å	1.23Å
C1	C2	sing	1.51Å	1.50Å
C2	N1	sing	1.35Å	1.35Å
N1	C3	sing	1.46Å	1.46Å
C3	C4	sing	1.51Å	1.49Å
C4	C5	doub	1.33Å	1.41Å	Aromatic
C4	S1	sing	1.76Å	1.73Å	Aromatic
C5	C6	sing	1.38Å	1.41Å	Aromatic
S1	C7	sing	1.76Å	1.72Å	Aromatic
C6	C7	doub	1.34Å	1.39Å	Aromatic
C7	CL1	sing	1.74Å	1.72Å
N1	H1	sing	0.97Å	1.00Å
C5	H2	sing	1.08Å	1.08Å
C6	H3	sing	1.08Å	1.08Å
C1	H4	sing	1.09Å	1.10Å
C1	H5	sing	1.09Å	1.10Å
C1	H6	sing	1.09Å	1.10Å
C3	H7	sing	1.09Å	1.10Å
C3	H8	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C2	C1	121.0°	120.0°
O1	C2	N1	122.4°	120.0°
C1	C2	N1	116.6°	120.0°
C2	C1	H4	109.5°	109.5°
C2	C1	H5	109.5°	109.4°
C2	C1	H6	109.5°	109.5°
C2	N1	C3	121.7°	120.0°
C2	N1	H1	119.2°	120.0°
N1	C3	C4	114.1°	109.5°
C3	N1	H1	119.1°	120.0°
N1	C3	H7	108.3°	109.5°
N1	C3	H8	108.3°	109.5°
C3	C4	C5	127.9°	125.2°
C3	C4	S1	120.3°	125.2°
C4	C3	H7	108.3°	109.4°
C4	C3	H8	108.3°	109.4°
C5	C4	S1	111.7°	109.6°
C4	C5	C6	112.5°	115.0°
C4	C5	H2	123.8°	122.5°
C4	S1	C7	91.0°	91.0°
C5	C6	C7	111.3°	114.9°
C6	C5	H2	123.8°	122.5°
C5	C6	H3	124.4°	122.6°
S1	C7	C6	113.3°	109.6°
S1	C7	CL1	119.2°	125.2°
C6	C7	CL1	127.5°	125.3°
C7	C6	H3	124.3°	122.5°
H4	C1	H5	109.5°	109.4°
H4	C1	H6	109.4°	109.5°
H5	C1	H6	109.5°	109.5°
H7	C3	H8	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C2	C1	N1	176.4°	179.9°
O1	C2	N1	C3	15.9°	0.1°
O1	C2	N1	H1	164.1°	179.7°
O1	C2	C1	H4	0.0°	179.9°
O1	C2	C1	H5	120.0°	60.0°
O1	C2	C1	H6	120.0°	60.0°
C1	C2	N1	C3	160.5°	180.0°
C1	C2	N1	H1	19.5°	0.2°
C2	C1	H4	H5	120.0°	119.9°
C2	C1	H4	H6	120.0°	120.0°
C2	C1	H5	H6	120.0°	120.0°
C2	N1	C3	H1	180.0°	179.8°
C2	N1	C3	C4	162.2°	179.8°
N1	C2	C1	H4	176.4°	0.0°
N1	C2	C1	H5	63.5°	119.9°
N1	C2	C1	H6	56.5°	120.0°
C2	N1	C3	H7	41.5°	60.3°
C2	N1	C3	H8	77.1°	59.7°
N1	C3	C4	H7	120.7°	120.0°
N1	C3	C4	H8	120.7°	120.1°
N1	C3	C4	C5	125.0°	90.0°
N1	C3	C4	S1	58.7°	89.6°
N1	C3	H7	H8	117.9°	120.0°
C3	C4	C5	S1	176.6°	179.7°
C3	C4	C5	C6	179.0°	179.7°
C3	C4	S1	C7	179.2°	179.7°
C4	C3	N1	H1	17.8°	0.0°
C3	C4	C5	H2	1.0°	0.3°
C4	C3	H7	H8	117.9°	119.9°
C4	C5	C6	H2	180.0°	180.0°
C5	C4	S1	C7	2.4°	0.0°
C4	C5	C6	C7	4.7°	0.0°
C4	C5	C6	H3	175.3°	180.0°
C5	C4	C3	H7	114.3°	30.1°
C5	C4	C3	H8	4.3°	150.0°
S1	C4	C5	C6	4.5°	0.0°
C4	S1	C7	C6	0.3°	0.1°
C4	S1	C7	CL1	178.6°	180.0°
S1	C4	C5	H2	175.6°	180.0°
S1	C4	C3	H7	62.0°	150.3°
S1	C4	C3	H8	179.4°	30.4°
C5	C6	C7	S1	2.9°	0.1°
C5	C6	C7	H3	180.0°	180.0°
C5	C6	C7	CL1	175.9°	180.0°
S1	C7	C6	CL1	178.8°	179.9°
S1	C7	C6	H3	177.1°	180.0°
C7	C6	C5	H2	175.3°	180.0°
CL1	C7	C6	H3	4.1°	0.0°
H1	N1	C3	H7	138.5°	120.0°
H1	N1	C3	H8	102.9°	120.0°
H2	C5	C6	H3	4.6°	0.0°
H4	C1	H5	H6	120.0°	120.0°

222624

PDB entries from 2024-07-17

PDB statistics

PDBj update info

Contact PDBj

numon