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J4T

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O5'Psing1.61Å1.59Å
O5'C5'sing1.43Å1.41Å
POP2sing1.61Å1.51Å
POP1doub1.48Å1.51Å
O4'C4'sing1.44Å1.43Å
O4'C1'sing1.44Å1.45Å
C5'C4'sing1.53Å1.53Å
C4'C3'sing1.54Å1.49Å
C1'N1sing1.47Å1.48Å
C1'C2'sing1.54Å1.51Å
C6N1sing1.37Å1.33Å
C6C5doub1.35Å1.39Å
N1C2sing1.35Å1.42Å
C5C4sing1.42Å1.38Å
C2O2doub1.22Å1.25Å
C2N3sing1.35Å1.33Å
C4N3sing1.35Å1.33Å
C4O4doub1.22Å1.24Å
N10N9doub1.29Å1.41ÅAromatic
N10C3sing1.34Å1.35ÅAromatic
C3'C2'sing1.55Å1.52Å
C3'O3'sing1.43Å1.40Å
N9N8sing1.29Å1.41ÅAromatic
C2'C3sing1.51Å1.50Å
C3C7doub1.35Å1.39ÅAromatic
N8C7sing1.35Å1.35ÅAromatic
C5'H2sing1.09Å1.10Å
C5'H3sing1.09Å1.10Å
C4'H4sing1.09Å1.10Å
C3'H5sing1.09Å1.10Å
O3'H6sing0.97Å0.95Å
C2'H7sing1.09Å1.10Å
C1'H8sing1.09Å1.10Å
C6H9sing1.08Å1.08Å
C5H10sing1.08Å1.08Å
N3H11sing0.97Å1.00Å
OP2H12sing0.97Å0.95Å
C7H13sing1.08Å1.08Å
PO1sing1.61Å15.24Å
N8C1sing1.46Å14.89Å
C1C12sing1.51Å0.00Å
C12C8sing1.51Å0.00Å
C8N2sing1.48Å0.00Å
N2C10sing1.48Å0.00Å
C10C11sing1.51Å0.00Å
C11C12doub1.31Å0.00Å
C10C9sing1.53Å0.00Å
C10C13sing1.53Å0.00Å
C8C14sing1.53Å0.00Å
C8C15sing1.53Å0.00Å
N2O3sing1.46Å0.00Å
O1H1sing0.97Å0.00Å
C1H14sing1.09Å0.00Å
C1H15sing1.09Å0.00Å
C11H16sing1.08Å0.00Å
C9H17sing1.09Å0.00Å
C9H18sing1.09Å0.00Å
C9H19sing1.09Å0.00Å
C13H20sing1.09Å0.00Å
C13H21sing1.09Å0.00Å
C13H22sing1.09Å0.00Å
C14H23sing1.09Å0.00Å
C14H24sing1.09Å0.00Å
C14H25sing1.09Å0.00Å
C15H26sing1.09Å0.00Å
C15H27sing1.09Å0.00Å
C15H28sing1.09Å0.00Å
O3H29sing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
PO5'C5'119.0°123.0°
O5'POP2108.4°109.5°
O5'POP1113.1°109.5°
O5'PO196.5°109.5°
O5'C5'C4'109.8°109.4°
O5'C5'H2109.4°109.5°
O5'C5'H3109.4°109.5°
OP2POP1113.8°109.5°
POP2H12109.5°114.0°
OP2PO1139.3°109.5°
OP1PO125.6°109.4°
C4'O4'C1'109.1°105.3°
O4'C4'C5'114.8°110.4°
O4'C4'C3'102.4°104.8°
O4'C4'H4109.9°110.5°
O4'C1'N1109.9°110.4°
O4'C1'C2'106.3°104.8°
O4'C1'H8108.4°110.5°
C5'C4'C3'112.0°110.3°
C4'C5'H2109.4°109.5°
C4'C5'H3109.4°109.5°
C5'C4'H4108.5°110.3°
C4'C3'C2'104.9°104.0°
C4'C3'O3'109.2°110.6°
C3'C4'H4109.1°110.4°
C4'C3'H5109.3°110.5°
N1C1'C2'116.4°110.4°
C1'N1C6120.4°119.7°
C1'N1C2120.3°119.7°
N1C1'H8108.0°110.3°
C1'C2'C3'103.3°104.1°
C1'C2'C3109.6°110.5°
C1'C2'H7110.7°110.7°
C2'C1'H8107.6°110.4°
N1C6C5119.7°119.7°
C6N1C2118.9°120.7°
N1C6H9120.1°120.2°
C6C5C4119.6°119.1°
C5C6H9120.2°120.2°
C6C5H10120.2°120.5°
N1C2O2120.5°119.6°
N1C2N3120.6°120.9°
C5C4N3120.6°119.4°
C5C4O4119.9°120.3°
C4C5H10120.2°120.4°
O2C2N3118.9°119.6°
C2N3C4120.5°120.3°
C2N3H11119.7°119.9°
N3C4O4119.5°120.3°
C4N3H11119.7°119.9°
N9N10C3106.2°108.9°
N10N9N8107.4°110.2°
N10C3C2'133.2°126.8°
N10C3C7110.6°106.5°
C2'C3'O3'114.0°110.5°
C3'C2'C3111.7°110.5°
C2'C3'H5108.8°110.5°
C3'C2'H7110.6°110.5°
O3'C3'H5110.5°110.6°
C3'O3'H6109.5°114.0°
N9N8C7108.3°108.3°
N9N8C1143.9°125.9°
C2'C3C7116.2°126.7°
C3C2'H7110.8°110.4°
C3C7N8107.5°106.2°
C3C7H13126.2°126.9°
N8C7H13126.2°126.9°
C7N8C136.1°125.8°
H2C5'H3109.4°109.5°
PO1H190.0°114.0°
N8C1C1290.0°109.5°
N8C1H1490.0°109.5°
N8C1H1590.0°109.5°
C1C12C890.0°125.3°
C1C12C1190.0°125.3°
C12C1H1490.0°109.4°
C12C1H1590.0°109.5°
C12C8N290.0°105.3°
C8C12C1190.0°109.4°
C12C8C1490.0°110.2°
C12C8C1590.0°110.2°
C8N2C1090.0°102.8°
N2C8C1490.0°110.3°
N2C8C1590.0°110.3°
C8N2O390.0°111.0°
N2C10C1190.0°105.5°
N2C10C990.0°110.3°
N2C10C1390.0°110.3°
C10N2O390.0°111.0°
C10C11C1290.0°109.5°
C11C10C990.0°110.4°
C11C10C1390.0°110.0°
C10C11H1690.0°125.3°
C12C11H1690.0°125.2°
C9C10C1390.0°110.3°
C10C9H1790.0°109.4°
C10C9H1890.0°109.5°
C10C9H1990.0°109.5°
C10C13H2090.0°109.5°
C10C13H2190.0°109.5°
C10C13H2290.0°109.5°
C14C8C1590.0°110.3°
C8C14H2390.0°109.4°
C8C14H2490.0°109.4°
C8C14H2590.0°109.5°
C8C15H2690.0°109.5°
C8C15H2790.0°109.4°
C8C15H2890.0°109.5°
N2O3H2990.0°114.0°
H14C1H1590.0°109.4°
H17C9H1890.0°109.4°
H17C9H1990.0°109.5°
H18C9H1990.0°109.5°
H20C13H2190.0°109.4°
H20C13H2290.0°109.5°
H21C13H2290.0°109.5°
H23C14H2490.0°109.5°
H23C14H2590.0°109.5°
H24C14H2590.0°109.5°
H26C15H2790.0°109.5°
H26C15H2890.0°109.5°
H27C15H2890.0°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O5'POP2OP1126.9°120.0°
O5'POP2O1124.7°120.0°
O5'POP1O152.4°120.0°
PO5'C5'C4'131.8°180.0°
PO5'C5'H211.7°60.0°
PO5'C5'H3108.1°60.0°
O5'POP2H12126.9°60.0°
O5'PO1H190.0°180.0°
C5'O5'POP253.6°65.0°
C5'O5'POP173.6°55.0°
O5'C5'C4'O4'10.9°69.6°
O5'C5'C4'H2120.1°120.0°
O5'C5'C4'H3120.1°120.0°
O5'C5'C4'C3'127.1°175.0°
O5'C5'H2H3119.8°120.0°
O5'C5'C4'H4112.5°52.8°
C5'O5'PO193.7°175.0°
OP2POP1O1176.8°120.0°
OP2PO1H190.0°60.0°
OP1POP2H120.0°180.0°
OP1PO1H190.0°60.0°
O4'C4'C5'C3'116.2°115.4°
O4'C4'C5'H4123.4°122.4°
O4'C4'C3'H4116.4°119.0°
C4'O4'C1'N1144.4°159.4°
C4'O4'C1'C2'17.6°40.5°
O4'C4'C3'C2'37.3°24.0°
O4'C4'C3'O3'159.9°142.6°
O4'C4'C5'H2109.2°50.4°
O4'C4'C5'H3131.0°170.4°
O4'C4'C3'H579.2°94.6°
C4'O4'C1'H897.8°78.4°
C1'O4'C4'C5'155.8°159.3°
C1'O4'C4'C3'34.2°40.5°
O4'C1'N1C2'120.8°115.4°
O4'C1'N1H8118.1°122.4°
O4'C1'C2'H8115.9°119.0°
O4'C1'N1C626.9°50.7°
O4'C1'N1C2145.7°129.6°
O4'C1'C2'C3'6.2°24.0°
O4'C1'C2'C3112.9°142.6°
C1'O4'C4'H481.6°78.4°
O4'C1'C2'H7124.6°94.8°
C5'C4'C3'H4120.1°122.2°
C5'C4'C3'C2'160.7°142.8°
C5'C4'C3'O3'76.7°98.5°
C4'C5'H2H3119.8°120.0°
C5'C4'C3'H544.2°24.2°
C4'C3'C2'C1'26.7°0.0°
C4'C3'C2'O3'119.4°118.7°
C4'C3'C2'H5116.8°118.6°
C4'C3'O3'H5120.2°122.7°
C4'C3'C2'C391.0°118.7°
C3'C4'C5'H27.0°65.0°
C3'C4'C5'H3112.8°55.0°
C4'C3'O3'H6180.0°61.4°
C4'C3'C2'H7145.1°118.8°
N1C1'C2'H8121.3°122.2°
C1'N1C6C2172.7°179.7°
C1'N1C6C5175.2°180.0°
C1'N1C2O26.1°0.0°
C1'N1C2N3175.3°179.7°
N1C1'C2'C3'116.6°142.8°
N1C1'C2'C3124.3°98.5°
N1C1'C2'H71.8°24.1°
C1'N1C6H94.8°0.0°
C2'C1'N1C693.9°64.7°
C2'C1'N1C293.5°115.0°
C1'C2'C3N10100.4°98.6°
C1'C2'C3'C3117.7°118.7°
C1'C2'C3'H7118.4°118.9°
C1'C2'C3'O3'146.1°118.7°
C1'C2'C3H7122.4°122.8°
C1'C2'C3C778.9°81.1°
C1'C2'C3'H590.1°118.6°
N1C6C5H9180.0°180.0°
N1C6C5C41.4°0.0°
C6N1C2O2178.9°179.7°
C6N1C2N32.6°0.6°
C6N1C1'H8145.0°173.1°
N1C6C5H10178.6°180.0°
C5C6N1C22.5°0.3°
C6C5C4H10180.0°180.0°
C6C5C4N30.2°0.0°
C6C5C4O4180.0°180.0°
N1C2O2N3178.6°179.7°
N1C2N3C41.4°0.6°
C2N1C1'H827.6°7.2°
C2N1C6H9177.5°179.7°
N1C2N3H11178.6°179.7°
C5C4N3C20.3°0.3°
C5C4N3O4179.8°180.0°
C4C5C6H9178.6°180.0°
C5C4N3H11179.8°180.0°
O2C2N3C4180.0°179.7°
O2C2N3H110.0°0.0°
C2N3C4H11180.0°179.7°
C2N3C4O4180.0°179.8°
N3C4C5H10179.8°180.0°
O4C4C5H100.0°0.0°
O4C4N3H110.0°0.0°
N9N10C3C2'179.9°179.8°
N9N10C3C70.8°0.4°
N10N9N8C70.2°0.2°
N10N9N8C17.8°179.7°
N10C3C2'C3'13.4°146.8°
C3N10N9N80.3°0.4°
N10C3C2'C7179.3°179.7°
N10C3C7N80.9°0.3°
N10C3C2'H7137.2°24.2°
N10C3C7H13179.1°179.8°
C2'C3'O3'H5122.9°122.6°
C3'C2'C3H7123.8°122.6°
C3'C2'C3C7167.3°33.6°
C2'C3'C4'H479.1°95.0°
C2'C3'O3'H663.0°176.1°
C3'C2'C1'H8122.1°95.0°
O3'C3'C2'C328.4°0.0°
O3'C3'C4'H443.5°23.6°
O3'C3'C2'H795.5°122.5°
N9N8C7C30.7°0.1°
N9N8C7C1172.0°180.0°
N9N8C7H13179.3°179.9°
N9N8C1C1290.0°55.0°
N9N8C1H1490.0°65.0°
N9N8C1H1590.0°175.0°
C2'C3C7N8179.6°180.0°
C3C2'C3'H5152.2°122.7°
C3C2'C1'H83.0°23.6°
C2'C3C7H130.4°0.1°
C3C7N8H13180.0°179.9°
C7C3C2'H743.5°156.2°
C3C7N8C1171.3°180.0°
C7N8C1C1290.0°125.0°
C7N8C1H1490.0°115.1°
C7N8C1H1590.0°4.9°
H2C5'C4'H4127.5°172.8°
H3C5'C4'H47.6°67.2°
H4C4'C3'H5164.4°146.4°
H5C3'O3'H659.9°61.3°
H5C3'C2'H728.3°0.2°
H7C2'C1'H8119.5°146.2°
H9C6C5H101.4°0.0°
H12OP2PO12.1°60.0°
H13C7N8C18.7°0.1°
N8C1C12H1490.0°120.0°
N8C1C12H1590.0°120.1°
N8C1C12C890.0°85.0°
N8C1C12C1190.0°94.6°
N8C1H14H1590.0°120.0°
C1C12C8C1190.0°179.7°
C1C12C8N290.0°163.1°
C1C12C11C1090.0°179.9°
C1C12C8C1490.0°44.1°
C1C12C8C1590.0°78.0°
C12C1H14H1590.0°119.9°
C1C12C11H1690.0°0.3°
C12C8N2C1490.0°119.0°
C12C8N2C1590.0°118.9°
C12C8N2C1090.0°26.2°
C8C12C11C1090.0°0.5°
C12C8C14C1590.0°122.0°
C12C8N2O390.0°144.9°
C8C12C1H1490.0°155.0°
C8C12C1H1590.0°35.1°
C8C12C11H1690.0°180.0°
C12C8C14H2390.0°60.0°
C12C8C14H2490.0°180.0°
C12C8C14H2590.0°60.0°
C12C8C15H2690.0°53.5°
C12C8C15H2790.0°173.6°
C12C8C15H2890.0°66.5°
C8N2C10O390.0°118.7°
C8N2C10C1190.0°25.9°
N2C8C12C1190.0°17.3°
C8N2C10C990.0°145.1°
C8N2C10C1390.0°92.8°
N2C8C14C1590.0°122.1°
N2C8C14H2390.0°175.9°
N2C8C14H2490.0°64.1°
N2C8C14H2590.0°55.9°
N2C8C15H2690.0°62.4°
N2C8C15H2790.0°57.7°
N2C8C15H2890.0°177.6°
C8N2O3H2990.0°179.9°
N2C10C11C990.0°119.1°
N2C10C11C1390.0°118.9°
N2C10C11C1290.0°16.5°
N2C10C9C1390.0°122.1°
C10N2C8C1490.0°145.1°
C10N2C8C1590.0°92.8°
N2C10C11H1690.0°163.0°
N2C10C9H1790.0°60.0°
N2C10C9H1890.0°179.9°
N2C10C9H1990.0°60.0°
N2C10C13H2090.0°66.7°
N2C10C13H2190.0°173.4°
N2C10C13H2290.0°53.4°
C10N2O3H2990.0°66.4°
C10C11C12H1690.0°179.5°
C11C10C9C1390.0°121.8°
C11C10N2O390.0°144.7°
C11C10C9H1790.0°176.2°
C11C10C9H1890.0°63.9°
C11C10C9H1990.0°56.2°
C11C10C13H2090.0°49.2°
C11C10C13H2190.0°70.7°
C11C10C13H2290.0°169.3°
C12C11C10C990.0°135.6°
C12C11C10C1390.0°102.4°
C11C12C8C1490.0°136.3°
C11C12C8C1590.0°101.7°
C11C12C1H1490.0°25.4°
C11C12C1H1590.0°145.3°
C9C10N2O390.0°96.2°
C9C10C11H1690.0°43.9°
C10C9H17H1890.0°120.0°
C10C9H17H1990.0°120.0°
C10C9H18H1990.0°120.0°
C9C10C13H2090.0°171.3°
C9C10C13H2190.0°51.3°
C9C10C13H2290.0°68.7°
C13C10N2O390.0°25.9°
C13C10C11H1690.0°78.1°
C13C10C9H1790.0°62.0°
C13C10C9H1890.0°57.9°
C13C10C9H1990.0°178.0°
C10C13H20H2190.0°120.0°
C10C13H20H2290.0°120.0°
C10C13H21H2290.0°120.0°
C14C8N2O390.0°96.1°
C8C14H23H2490.0°120.0°
C8C14H23H2590.0°120.0°
C8C14H24H2590.0°120.0°
C14C8C15H2690.0°175.5°
C14C8C15H2790.0°64.4°
C14C8C15H2890.0°55.5°
C15C8N2O390.0°26.0°
C15C8C14H2390.0°62.0°
C15C8C14H2490.0°58.0°
C15C8C14H2590.0°178.0°
C8C15H26H2790.0°120.0°
C8C15H26H2890.0°120.0°
C8C15H27H2890.0°119.9°
H17C9H18H1990.0°120.0°
H20C13H21H2290.0°120.0°
H23C14H24H2590.0°120.1°
H26C15H27H2890.0°120.0°

238582

PDB entries from 2025-07-09

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