Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

J3Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C6C7doub1.37Å1.37ÅAromatic
C6C5sing1.40Å1.39ÅAromatic
C1C2sing1.53Å1.53Å
C25O26sing1.43Å1.43Å
C25C24sing1.53Å1.53Å
N4C5sing1.39Å1.39Å
N4C2sing1.46Å1.47Å
C7C8sing1.40Å1.40ÅAromatic
C5N20doub1.32Å1.32ÅAromatic
O26C27sing1.43Å1.43Å
C2C29sing1.51Å1.51Å
C27C28sing1.53Å1.54Å
O22C21doub1.22Å1.22Å
C8C9sing1.47Å1.48ÅAromatic
C8C19doub1.40Å1.40ÅAromatic
C24N23sing1.47Å1.47Å
N20C19sing1.33Å1.33ÅAromatic
C21N23sing1.35Å1.36Å
C21C9sing1.47Å1.48Å
N23C28sing1.47Å1.48Å
C9C10doub1.36Å1.37ÅAromatic
C19N11sing1.38Å1.38ÅAromatic
C29N35doub1.32Å1.32ÅAromatic
C29C30sing1.38Å1.38ÅAromatic
C10N11sing1.36Å1.35ÅAromatic
N11C12sing1.40Å1.40Å
N35C34sing1.32Å1.32ÅAromatic
C30C31doub1.39Å1.39ÅAromatic
C13C12sing1.40Å1.36ÅAromatic
C13C14doub1.35Å1.40ÅAromatic
C12N17doub1.31Å1.36ÅAromatic
C34C32doub1.38Å1.38ÅAromatic
C14C15sing1.51Å1.51Å
C14N16sing1.35Å1.31ÅAromatic
N17N16sing1.40Å1.40ÅAromatic
C31C32sing1.39Å1.39ÅAromatic
C32F33sing1.35Å1.35Å
C6H1sing1.08Å1.08Å
C7H2sing1.08Å1.08Å
C10H3sing1.08Å1.08Å
C13H4sing1.08Å1.08Å
C15H5sing1.09Å1.10Å
C15H6sing1.09Å1.10Å
C15H7sing1.09Å1.10Å
C24H8sing1.09Å1.10Å
C24H9sing1.09Å1.10Å
C28H10sing1.09Å1.10Å
C28H11sing1.09Å1.10Å
C1H12sing1.09Å1.10Å
C1H13sing1.09Å1.10Å
C1H14sing1.09Å1.10Å
C2H15sing1.09Å1.10Å
C25H16sing1.09Å1.10Å
C25H17sing1.09Å1.10Å
C27H18sing1.09Å1.10Å
C27H19sing1.09Å1.10Å
C30H20sing1.08Å1.08Å
C31H21sing1.08Å1.08Å
C34H22sing1.08Å1.08Å
N16H23sing0.97Å1.00Å
N4H24sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C7C6C5119.5°119.4°
C6C7C8118.6°118.3°
C7C6H1120.2°120.3°
C6C7H2120.7°120.8°
C6C5N4119.9°119.3°
C6C5N20120.9°121.3°
C5C6H1120.2°120.3°
C1C2N4109.5°109.5°
C1C2C29109.6°109.5°
C2C1H12109.5°109.5°
C2C1H13109.5°109.5°
C2C1H14109.5°109.5°
C1C2H15108.7°109.5°
O26C25C24109.4°109.2°
C25O26C27113.4°114.1°
O26C25H16109.5°109.5°
O26C25H17109.5°109.5°
C25C24N23109.7°108.4°
C25C24H8109.4°109.7°
C25C24H9109.4°109.7°
C24C25H16109.5°109.5°
C24C25H17109.5°109.5°
C5N4C2120.5°120.0°
N4C5N20119.2°119.4°
C5N4H24106.7°119.9°
N4C2C29110.6°109.5°
N4C2H15109.5°109.4°
C2N4H24106.7°120.0°
C7C8C9134.3°134.1°
C7C8C19119.2°119.8°
C8C7H2120.7°120.9°
C5N20C19121.8°121.5°
O26C27C28108.5°109.3°
O26C27H18109.7°109.5°
O26C27H19109.7°109.5°
C2C29N35120.0°119.6°
C2C29C30119.3°119.6°
C29C2H15109.0°109.4°
C27C28N23109.0°108.4°
C27C28H10109.6°109.7°
C27C28H11109.6°109.7°
C28C27H18109.7°109.5°
C28C27H19109.7°109.5°
O22C21N23117.2°120.0°
O22C21C9117.1°120.0°
C9C8C19106.5°106.1°
C8C9C21125.7°126.8°
C8C9C10105.4°106.4°
C8C19N20120.0°119.7°
C8C19N11107.3°107.4°
C24N23C21118.8°121.0°
C24N23C28116.3°118.1°
N23C24H8109.4°109.6°
N23C24H9109.4°109.7°
N20C19N11132.7°132.9°
N23C21C9125.7°120.0°
C21N23C28124.9°121.0°
C21C9C10128.9°126.8°
N23C28H10109.6°109.6°
N23C28H11109.6°109.8°
C9C10N11110.6°109.7°
C9C10H3124.7°125.2°
C19N11C10110.2°110.5°
C19N11C12125.5°124.8°
N35C29C30120.7°120.8°
C29N35C34121.9°121.8°
C29C30C31119.2°119.2°
C29C30H20120.4°120.4°
C10N11C12124.3°124.7°
N11C10H3124.7°125.1°
N11C12C13126.6°126.0°
N11C12N17125.9°125.9°
N35C34C32120.6°120.7°
N35C34H22119.7°119.7°
C30C31C32118.5°118.4°
C31C30H20120.4°120.4°
C30C31H21120.8°120.8°
C12C13C14107.9°107.9°
C13C12N17107.4°108.1°
C12C13H4126.1°126.1°
C13C14C15125.7°126.1°
C13C14N16108.4°107.9°
C14C13H4126.0°126.1°
C12N17N16107.8°108.1°
C34C32C31119.1°119.1°
C34C32F33120.6°120.4°
C32C34H22119.7°119.6°
C15C14N16125.9°126.1°
C14C15H5109.5°109.4°
C14C15H6109.5°109.5°
C14C15H7109.5°109.5°
C14N16N17108.5°108.1°
C14N16H23125.7°126.0°
N17N16H23125.8°126.0°
C31C32F33120.4°120.5°
C32C31H21120.7°120.8°
H5C15H6109.4°109.5°
H5C15H7109.5°109.5°
H6C15H7109.5°109.5°
H8C24H9109.5°109.7°
H10C28H11109.4°109.7°
H12C1H13109.5°109.5°
H12C1H14109.5°109.5°
H13C1H14109.4°109.4°
H16C25H17109.5°109.6°
H18C27H19109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C7C6C5H1180.0°179.9°
C7C6C5N4179.9°179.8°
C6C7C8H2180.0°180.0°
C7C6C5N200.2°0.0°
C6C7C8C9179.7°180.0°
C6C7C8C190.2°0.1°
C6C5N4N20180.0°179.8°
C6C5N4C2177.1°0.3°
C5C6C7C80.0°0.0°
C6C5N20C190.3°0.1°
C5C6C7H2180.0°180.0°
C6C5N4H2455.5°179.7°
C1C2N4C5166.3°85.0°
C1C2N4C29120.8°120.0°
C1C2N4H15119.1°120.1°
C1C2C29H15118.8°120.0°
C1C2C29N3597.7°94.9°
C1C2C29C3082.5°84.7°
C2C1H12H13120.0°120.0°
C2C1H12H14120.0°120.0°
C2C1H13H14120.0°120.0°
C1C2N4H2444.8°95.0°
O26C25C24H16120.0°119.9°
O26C25C24H17120.0°119.9°
C25O26C27C2864.1°62.6°
O26C25C24N2351.7°52.3°
O26C25C24H8171.7°172.0°
O26C25C24H968.3°67.4°
O26C25H16H17120.0°120.2°
C25O26C27H18176.0°57.4°
C25O26C27H1955.8°177.4°
C24C25O26C2762.6°62.6°
C25C24N23H8120.0°119.7°
C25C24N23H9120.0°119.8°
C25C24N23C21131.4°129.4°
C25C24N23C2849.1°50.5°
C25C24H8H9119.9°120.6°
C24C25H16H17120.0°120.1°
C5N4C2H24121.6°180.0°
C5N4C2C2972.8°154.9°
N4C5N20C19179.8°179.7°
N4C5C6H10.1°0.3°
C5N4C2H1547.3°35.0°
C2N4C5N202.9°180.0°
N4C2C29H15120.4°119.9°
N4C2C29N3523.0°25.1°
N4C2C29C30156.7°155.3°
N4C2C1H12180.0°180.0°
N4C2C1H1360.0°60.0°
N4C2C1H1460.0°60.0°
C7C8C9C19179.6°179.9°
C7C8C19N200.1°0.0°
C7C8C9C211.4°0.0°
C7C8C9C10179.6°179.9°
C7C8C19N11180.0°179.9°
C8C7C6H1180.0°180.0°
C5N20C19C80.1°0.1°
C5N20C19N11179.8°180.0°
N20C5C6H1179.8°179.9°
N20C5N4H24124.5°0.1°
O26C27C28H18119.9°119.9°
O26C27C28H19119.8°120.0°
O26C27C28N2354.7°52.2°
O26C27C28H1065.3°67.4°
O26C27C28H11174.6°172.1°
C27O26C25H1657.4°177.5°
C27O26C25H17177.4°57.4°
O26C27H18H19120.4°120.1°
C2C29N35C30179.7°179.6°
C2C29N35C34179.8°179.8°
C2C29C30C31179.8°179.9°
C29C2C1H1258.6°60.0°
C29C2C1H13178.6°180.0°
C29C2C1H1461.5°60.1°
C2C29C30H200.2°0.1°
C29C2N4H24165.6°25.0°
C27C28N23C2450.7°50.5°
C27C28N23C21129.9°129.4°
C27C28N23H10119.9°119.7°
C27C28N23H11119.9°119.8°
C27C28H10H11120.2°120.6°
C28C27H18H19120.4°120.1°
O22C21C9C825.5°37.7°
O22C21N23C240.4°5.2°
O22C21N23C9179.9°179.9°
O22C21N23C28179.9°174.7°
O22C21C9C10152.3°142.2°
C9C8C19N20179.8°179.9°
C8C9C21N23154.4°142.3°
C8C9C21C10177.8°179.9°
C9C8C19N110.3°0.0°
C8C9C10N111.0°0.0°
C9C8C7H20.3°0.1°
C8C9C10H3179.0°180.0°
C8C19N20N11179.9°179.9°
C19C8C9C21179.0°180.0°
C19C8C9C100.8°0.0°
C8C19N11C100.3°0.0°
C8C19N11C12179.9°180.0°
C19C8C7H2179.9°180.0°
C24N23C21C28179.4°179.9°
C24N23C21C9179.7°174.7°
N23C24H8H9119.9°120.5°
C24N23C28H1069.3°69.2°
C24N23C28H11170.6°170.3°
N23C24C25H1668.3°172.2°
N23C24C25H17171.7°67.6°
N20C19N11C10179.6°179.9°
N20C19N11C120.0°0.1°
N23C21C9C1027.9°37.7°
C21N23C24H811.4°9.7°
C21N23C24H9108.6°110.8°
C21N23C28H10110.2°110.9°
C21N23C28H1110.0°9.7°
C9C21N23C280.3°5.4°
C21C9C10N11179.1°180.0°
C21C9C10H30.9°0.1°
C28N23C24H8169.1°170.2°
C28N23C24H970.9°69.2°
N23C28H10H11120.2°120.6°
N23C28C27H18174.6°67.7°
N23C28C27H1965.1°172.2°
C9C10N11C190.9°0.0°
C9C10N11H3180.0°180.0°
C9C10N11C12179.6°180.0°
C19N11C10C12179.6°180.0°
C19N11C12C139.9°180.0°
C19N11C12N17169.1°0.0°
C19N11C10H3179.2°180.0°
N35C29C30C310.1°0.3°
C29N35C34C320.1°0.6°
N35C29C2H15143.4°145.0°
N35C29C30H20179.9°179.7°
C29N35C34H22179.9°179.6°
C30C29N35C340.1°0.6°
C29C30C31H20180.0°180.0°
C29C30C31C320.1°0.0°
C30C29C2H1536.3°35.3°
C29C30C31H21179.9°180.0°
C10N11C12C13170.6°0.0°
C10N11C12N1710.4°180.0°
N11C12C13N17179.2°180.0°
N11C12C13C14179.5°180.0°
N11C12N17N16179.6°180.0°
C12N11C10H30.4°0.0°
N11C12C13H40.5°0.3°
N35C34C32H22180.0°179.8°
N35C34C32C310.0°0.3°
N35C34C32F33180.0°179.8°
C30C31C32C340.0°0.0°
C30C31C32H21180.0°180.0°
C30C31C32F33180.0°179.9°
C12C13C14H4180.0°179.7°
C12C13C14C15179.9°180.0°
C12C13C14N160.2°0.0°
C13C12N17N160.4°0.0°
C14C13C12N170.4°0.0°
C13C14C15N16179.9°179.9°
C13C14N16N170.0°0.0°
C13C14C15H589.9°90.1°
C13C14C15H6150.1°150.0°
C13C14C15H730.1°30.0°
C13C14N16H23179.9°180.0°
C12N17N16C140.3°0.0°
N17C12C13H4179.7°179.7°
C12N17N16H23179.7°180.0°
C34C32C31F33180.0°179.9°
C34C32C31H21180.0°180.0°
C15C14N16N17179.9°180.0°
C15C14C13H40.1°0.2°
C14C15H5H6120.0°120.0°
C14C15H5H7120.0°120.0°
C14C15H6H7120.0°120.0°
C15C14N16H230.2°0.0°
C14N16N17H23180.0°180.0°
N16C14C13H4179.8°179.7°
N16C14C15H589.9°90.0°
N16C14C15H630.0°30.0°
N16C14C15H7150.0°150.0°
C32C31C30H20179.9°180.0°
C31C32C34H22179.9°179.9°
F33C32C31H210.0°0.1°
F33C32C34H220.0°0.0°
H1C6C7H20.0°0.1°
H5C15H6H7120.0°120.1°
H8C24C25H1651.7°68.1°
H8C24C25H1768.3°52.0°
H9C24C25H16171.6°52.5°
H9C24C25H1751.6°172.6°
H10C28C27H1854.6°172.7°
H10C28C27H19174.9°52.6°
H11C28C27H1865.5°52.1°
H11C28C27H1954.8°68.0°
H12C1H13H14120.0°120.0°
H12C1C2H1560.4°60.0°
H13C1C2H1559.6°60.0°
H14C1C2H15179.5°180.0°
H15C2N4H2474.3°144.9°
H20C30C31H210.1°0.0°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon