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SummaryGeometryRelated PDB entries

J04

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CBBOBAsing1.43Å1.40Å
CALOAKsing1.43Å1.41Å
OBACAUsing1.36Å1.41Å
CATCAUdoub1.39Å1.39ÅAromatic
CATCASsing1.38Å1.40ÅAromatic
CARCASsing1.51Å1.56Å
CARNAIsing1.47Å1.47Å
CAACABdoub1.36Å1.38ÅAromatic
CAACAFsing1.41Å1.41ÅAromatic
CAJNAIdoub1.31Å1.39ÅAromatic
CAJCAFsing1.40Å1.39ÅAromatic
OAKCABsing1.36Å1.41Å
CAUCAVsing1.39Å1.39ÅAromatic
CASCAXdoub1.38Å1.41ÅAromatic
NAICAHsing1.33Å1.39ÅAromatic
CABCACsing1.40Å1.36ÅAromatic
CAFCAEdoub1.42Å1.35ÅAromatic
CBCOAZsing1.43Å1.40Å
CAVOAZsing1.36Å1.41Å
CAVCAWdoub1.39Å1.38ÅAromatic
CAXCAWsing1.39Å1.41ÅAromatic
CAWOAYsing1.36Å1.42Å
CACOAMsing1.36Å1.40Å
CACCADdoub1.37Å1.39ÅAromatic
CAECAGsing1.41Å1.33ÅAromatic
CAECADsing1.40Å1.41ÅAromatic
CAHCAGdoub1.36Å1.41ÅAromatic
OAYCBDsing1.43Å1.40Å
OAMSANsing1.52Å1.65Å
OAOSANdoub1.42Å1.62Å
SANNAQsing1.66Å1.69Å
SANOAPdoub1.42Å1.62Å
CBBH1sing1.09Å1.10Å
CBBH2sing1.09Å1.10Å
CBBH3sing1.09Å1.10Å
CATH4sing1.08Å1.08Å
CBCH5sing1.09Å1.10Å
CBCH6sing1.09Å1.10Å
CBCH7sing1.09Å1.10Å
CBDH8sing1.09Å1.10Å
CBDH9sing1.09Å1.10Å
CBDH10sing1.09Å1.10Å
CAXH11sing1.08Å1.08Å
CARH12sing1.09Å1.10Å
CARH13sing1.09Å1.10Å
CAJH14sing1.08Å1.08Å
CAHH15sing1.08Å1.08Å
CAGH16sing1.08Å1.08Å
CADH17sing1.08Å1.08Å
CAAH18sing1.08Å1.08Å
CALH19sing1.09Å1.10Å
CALH20sing1.09Å1.10Å
CALH21sing1.09Å1.10Å
NAQH22sing0.97Å1.00Å
NAQH23sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CBBOBACAU112.0°117.0°
OBACBBH1109.5°109.4°
OBACBBH2109.5°109.4°
OBACBBH3109.5°109.5°
CALOAKCAB116.1°117.0°
OAKCALH19109.5°109.5°
OAKCALH20109.5°109.5°
OAKCALH21109.4°109.5°
OBACAUCAT120.7°120.1°
OBACAUCAV118.9°120.0°
CAUCATCAS121.0°120.1°
CATCAUCAV120.3°119.9°
CAUCATH4119.5°119.9°
CATCASCAR118.0°119.9°
CATCASCAX117.7°120.2°
CASCATH4119.5°119.9°
CASCARNAI117.2°109.5°
CARCASCAX124.3°119.9°
CASCARH12107.5°109.5°
CASCARH13107.5°109.5°
CARNAICAJ120.1°118.6°
CARNAICAH122.3°118.6°
NAICARH12107.5°109.5°
NAICARH13107.5°109.5°
CABCAACAF118.1°119.5°
CAACABOAK122.4°119.5°
CAACABCAC120.5°120.9°
CABCAAH18120.9°120.3°
CAACAFCAJ117.8°122.0°
CAACAFCAE121.2°119.4°
CAFCAAH18121.0°120.2°
NAICAJCAF119.2°119.8°
CAJNAICAH117.5°122.8°
NAICAJH14120.4°120.1°
CAJCAFCAE121.0°118.6°
CAFCAJH14120.4°120.0°
OAKCABCAC117.1°119.6°
CAUCAVOAZ120.6°120.1°
CAUCAVCAW120.3°119.8°
CASCAXCAW121.2°120.1°
CASCAXH11119.4°120.0°
NAICAHCAG122.3°121.9°
NAICAHH15118.9°119.1°
CABCACOAM114.1°119.6°
CABCACCAD122.4°120.9°
CAFCAECAG122.2°118.2°
CAFCAECAD120.6°119.7°
CBCOAZCAV113.8°117.0°
OAZCBCH5109.5°109.5°
OAZCBCH6109.5°109.5°
OAZCBCH7109.5°109.5°
OAZCAVCAW119.0°120.1°
CAVCAWCAX119.4°119.9°
CAVCAWOAY115.4°120.0°
CAXCAWOAY125.2°120.0°
CAWCAXH11119.4°120.0°
CAWOAYCBD119.2°117.0°
OAMCACCAD123.4°119.6°
CACOAMSAN123.2°114.0°
CACCADCAE117.2°119.5°
CACCADH17121.4°120.2°
CAGCAECAD117.1°122.1°
CAECAGCAH117.6°118.7°
CAECAGH16121.2°120.6°
CAECADH17121.4°120.2°
CAGCAHH15118.9°119.0°
CAHCAGH16121.2°120.7°
OAYCBDH8109.5°109.5°
OAYCBDH9109.4°109.5°
OAYCBDH10109.5°109.5°
OAMSANOAO107.3°106.4°
OAMSANNAQ101.8°107.2°
OAMSANOAP110.5°106.4°
OAOSANNAQ111.7°106.4°
OAOSANOAP114.5°123.1°
NAQSANOAP110.2°106.4°
SANNAQH22109.5°120.0°
SANNAQH23109.5°120.0°
H1CBBH2109.4°109.5°
H1CBBH3109.5°109.5°
H2CBBH3109.5°109.5°
H5CBCH6109.5°109.5°
H5CBCH7109.4°109.4°
H6CBCH7109.5°109.5°
H8CBDH9109.5°109.5°
H8CBDH10109.5°109.5°
H9CBDH10109.5°109.5°
H12CARH13109.5°109.4°
H19CALH20109.4°109.4°
H19CALH21109.5°109.5°
H20CALH21109.5°109.4°
H22NAQH23109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CBBOBACAUCAT3.9°0.3°
CBBOBACAUCAV175.2°180.0°
OBACBBH1H2120.0°119.9°
OBACBBH1H3120.0°120.0°
OBACBBH2H3120.0°120.0°
CALOAKCABCAA16.9°0.0°
CALOAKCABCAC164.2°179.9°
OAKCALH19H20120.0°120.0°
OAKCALH19H21120.0°120.1°
OAKCALH20H21120.0°120.1°
OBACAUCATCAV179.0°179.7°
OBACAUCATCAS179.5°180.0°
OBACAUCAVOAZ0.6°0.0°
OBACAUCAVCAW179.6°180.0°
CAUOBACBBH1180.0°180.0°
CAUOBACBBH260.0°60.0°
CAUOBACBBH360.0°60.0°
OBACAUCATH40.5°0.0°
CAUCATCASH4180.0°180.0°
CAUCATCASCAR179.1°180.0°
CAUCATCASCAX0.4°0.0°
CATCAUCAVOAZ179.6°179.8°
CATCAUCAVCAW0.5°0.3°
CATCASCARCAX179.4°180.0°
CATCASCARNAI171.6°90.0°
CASCATCAUCAV0.5°0.3°
CATCASCAXCAW0.2°0.3°
CATCASCAXH11179.8°180.0°
CATCASCARH1250.5°150.0°
CATCASCARH1367.3°30.0°
CASCARNAIH12121.1°120.0°
CASCARNAIH13121.1°120.0°
CASCARNAICAJ129.6°89.7°
CASCARNAICAH53.3°90.0°
CARCASCAXCAW179.2°179.7°
CARCASCATH40.9°0.0°
CARCASCAXH110.8°0.0°
CASCARH12H13116.5°120.0°
CARNAICAJCAH177.2°179.7°
CARNAICAJCAF180.0°179.9°
NAICARCASCAX7.8°90.0°
CARNAICAHCAG179.9°179.9°
NAICARH12H13116.5°120.0°
CARNAICAJH140.0°0.1°
CARNAICAHH150.1°0.0°
CABCAACAFH18180.0°179.8°
CABCAACAFCAJ179.8°180.0°
CAACABOAKCAC178.9°179.8°
CABCAACAFCAE0.1°0.0°
CAACABCACOAM177.5°180.0°
CAACABCACCAD0.8°0.4°
CAACAFCAJNAI178.2°180.0°
CAACAFCAJCAE179.9°180.0°
CAFCAACABOAK179.5°180.0°
CAFCAACABCAC0.7°0.2°
CAACAFCAECAG179.4°179.8°
CAACAFCAECAD0.5°0.0°
CAACAFCAJH141.7°0.0°
NAICAJCAFH14180.0°180.0°
NAICAJCAFCAE1.9°0.0°
CAJNAICAHCAG2.8°0.2°
CAJNAICARH12109.3°150.3°
CAJNAICARH138.5°30.3°
CAJNAICAHH15177.2°179.7°
CAFCAJNAICAH2.8°0.2°
CAJCAFCAECAG0.7°0.2°
CAJCAFCAECAD179.7°180.0°
CAJCAFCAAH180.2°0.2°
OAKCABCACOAM1.4°0.1°
OAKCABCACCAD179.7°179.8°
OAKCABCAAH180.5°0.2°
CABOAKCALH19180.0°60.0°
CABOAKCALH2060.0°60.0°
CABOAKCALH2160.0°180.0°
CAUCAVOAZCBC105.8°90.0°
CAUCAVOAZCAW179.8°179.9°
CAUCAVCAWCAX0.4°0.0°
CAUCAVCAWOAY179.9°180.0°
CAVCAUCATH4179.5°179.8°
CASCAXCAWCAV0.2°0.3°
CASCAXCAWH11180.0°179.7°
CASCAXCAWOAY179.7°179.7°
CAXCASCATH4179.6°179.9°
CAXCASCARH12128.9°30.0°
CAXCASCARH13113.4°150.0°
NAICAHCAGCAE1.7°0.1°
NAICAHCAGH15180.0°179.9°
CAHNAICARH1267.8°30.0°
CAHNAICARH13174.5°150.0°
CAHNAICAJH14177.2°179.8°
NAICAHCAGH16178.3°180.0°
CABCACOAMCAD178.3°179.7°
CABCACCADCAE0.2°0.4°
CABCACOAMSAN152.5°90.1°
CABCACCADH17179.7°179.6°
CACCABCAAH18179.4°180.0°
CAFCAECADCAC0.4°0.2°
CAFCAECAGCAD179.0°179.7°
CAFCAECAGCAH0.6°0.3°
CAECAFCAJH14178.1°180.0°
CAFCAECAGH16179.4°179.8°
CAFCAECADH17179.6°179.7°
CAECAFCAAH18180.0°179.8°
CBCOAZCAVCAW74.4°89.9°
OAZCBCH5H6120.0°120.0°
OAZCBCH5H7120.0°120.0°
OAZCBCH6H7120.0°120.0°
OAZCAVCAWCAX179.8°180.0°
OAZCAVCAWOAY0.2°0.0°
CAVOAZCBCH5180.0°60.0°
CAVOAZCBCH660.0°60.0°
CAVOAZCBCH760.0°180.0°
CAVCAWCAXOAY179.5°180.0°
CAVCAWOAYCBD175.9°180.0°
CAVCAWCAXH11179.8°180.0°
CAXCAWOAYCBD3.6°0.0°
CAWOAYCBDH8180.0°60.0°
CAWOAYCBDH960.0°60.0°
CAWOAYCBDH1060.0°180.0°
OAYCAWCAXH110.3°0.0°
OAMCACCADCAE177.9°179.9°
CACOAMSANOAO51.6°171.4°
CACOAMSANNAQ169.0°75.0°
CACOAMSANOAP74.0°38.6°
OAMCACCADH172.1°0.1°
CACCADCAECAG179.4°180.0°
CACCADCAEH17180.0°180.0°
CADCACOAMSAN29.2°89.6°
CAECAGCAHH16180.0°179.9°
CAECAGCAHH15178.3°180.0°
CAGCAECADH170.7°0.0°
CADCAECAGCAH179.6°180.0°
CADCAECAGH160.4°0.1°
OAYCBDH8H9120.0°120.0°
OAYCBDH8H10120.0°120.0°
OAYCBDH9H10120.0°120.0°
OAMSANOAONAQ110.7°114.1°
OAMSANOAOOAP123.1°122.9°
OAMSANNAQOAP117.3°113.5°
OAMSANNAQH22180.0°0.0°
OAMSANNAQH2360.0°180.0°
OAOSANNAQOAP128.5°132.9°
OAOSANNAQH2265.8°113.6°
OAOSANNAQH2354.2°66.5°
SANNAQH22H23120.0°179.9°
OAPSANNAQH2262.7°113.5°
OAPSANNAQH23177.3°66.5°
H1CBBH2H3120.0°120.1°
H5CBCH6H7120.0°120.0°
H8CBDH9H10120.0°120.0°
H15CAHCAGH161.7°0.1°
H19CALH20H21120.0°119.9°

248636

PDB entries from 2026-02-04

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