Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | O1 | sing | 1.43Å | 1.43Å | |
C1 | C2 | sing | 1.53Å | 1.52Å | |
C1 | C6 | sing | 1.53Å | 1.53Å | |
C1 | H1 | sing | 1.09Å | 1.12Å | |
O1 | P1 | sing | 1.61Å | 1.63Å | |
C2 | O2 | sing | 1.43Å | 1.42Å | |
C2 | C3 | sing | 1.53Å | 1.51Å | |
C2 | H2 | sing | 1.09Å | 1.11Å | |
O2 | HO | sing | 0.97Å | 0.95Å | |
C3 | O3 | sing | 1.43Å | 1.43Å | |
C3 | C4 | sing | 1.53Å | 1.53Å | |
C3 | H3 | sing | 1.09Å | 1.12Å | |
O3 | P3 | sing | 1.61Å | 1.62Å | |
C4 | O4 | sing | 1.43Å | 1.44Å | |
C4 | C5 | sing | 1.53Å | 1.53Å | |
C4 | H4 | sing | 1.09Å | 1.11Å | |
O4 | P4 | sing | 1.61Å | 1.63Å | |
C5 | O5 | sing | 1.43Å | 1.44Å | |
C5 | C6 | sing | 1.53Å | 1.53Å | |
C5 | H5 | sing | 1.09Å | 1.12Å | |
O5 | P5 | sing | 1.61Å | 1.63Å | |
C6 | O6 | sing | 1.43Å | 1.42Å | |
C6 | H6 | sing | 1.09Å | 1.11Å | |
O6 | HO6 | sing | 0.97Å | 0.95Å | |
P1 | OP1 | doub | 1.48Å | 1.52Å | |
P1 | OP2 | sing | 1.61Å | 1.52Å | |
P1 | OP3 | sing | 1.61Å | 1.51Å | |
OP2 | HO2 | sing | 0.97Å | 0.95Å | |
OP3 | HO3 | sing | 0.97Å | 0.95Å | |
P3 | O10 | doub | 1.48Å | 1.52Å | |
P3 | O11 | sing | 1.61Å | 1.52Å | |
P3 | O12 | sing | 1.61Å | 1.53Å | |
O11 | HOB | sing | 0.97Å | 0.95Å | |
O12 | HOC | sing | 0.97Å | 0.95Å | |
P4 | OP4 | sing | 1.61Å | 1.52Å | |
P4 | OP5 | sing | 1.61Å | 1.51Å | |
P4 | OP6 | doub | 1.48Å | 1.52Å | |
OP4 | HO4 | sing | 0.97Å | 0.95Å | |
OP5 | HO5 | sing | 0.97Å | 0.95Å | |
P5 | OP7 | sing | 1.61Å | 1.52Å | |
P5 | OP8 | sing | 1.61Å | 1.52Å | |
P5 | OP9 | doub | 1.48Å | 1.52Å | |
OP7 | HO7 | sing | 0.97Å | 0.95Å | |
OP8 | HO8 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1 | C1 | C2 | 109.9° | 109.5° |
O1 | C1 | C6 | 109.6° | 109.5° |
O1 | C1 | H1 | 109.7° | 109.4° |
C1 | O1 | P1 | 121.1° | 106.8° |
C2 | C1 | C6 | 111.3° | 109.5° |
C2 | C1 | H1 | 108.0° | 109.5° |
C1 | C2 | O2 | 110.0° | 109.5° |
C1 | C2 | C3 | 109.6° | 109.5° |
C1 | C2 | H2 | 109.0° | 109.5° |
C6 | C1 | H1 | 108.2° | 109.5° |
C1 | C6 | C5 | 114.0° | 109.5° |
C1 | C6 | O6 | 109.1° | 109.4° |
C1 | C6 | H6 | 106.6° | 109.5° |
O1 | P1 | OP1 | 104.6° | 109.5° |
O1 | P1 | OP2 | 105.7° | 109.5° |
O1 | P1 | OP3 | 106.2° | 109.4° |
O2 | C2 | C3 | 109.5° | 109.4° |
O2 | C2 | H2 | 109.2° | 109.5° |
C2 | O2 | HO | 109.9° | 106.8° |
C3 | C2 | H2 | 109.5° | 109.5° |
C2 | C3 | O3 | 109.8° | 109.5° |
C2 | C3 | C4 | 111.7° | 109.5° |
C2 | C3 | H3 | 108.0° | 109.5° |
O3 | C3 | C4 | 110.2° | 109.5° |
O3 | C3 | H3 | 109.6° | 109.4° |
C3 | O3 | P3 | 120.4° | 106.9° |
C4 | C3 | H3 | 107.5° | 109.4° |
C3 | C4 | O4 | 110.0° | 109.4° |
C3 | C4 | C5 | 113.3° | 109.5° |
C3 | C4 | H4 | 106.4° | 109.5° |
O3 | P3 | O10 | 105.6° | 109.5° |
O3 | P3 | O11 | 106.7° | 109.5° |
O3 | P3 | O12 | 104.9° | 109.5° |
O4 | C4 | C5 | 109.3° | 109.4° |
O4 | C4 | H4 | 110.6° | 109.4° |
C4 | O4 | P4 | 121.6° | 106.8° |
C5 | C4 | H4 | 107.2° | 109.5° |
C4 | C5 | O5 | 109.3° | 109.5° |
C4 | C5 | C6 | 114.5° | 109.5° |
C4 | C5 | H5 | 106.3° | 109.4° |
O4 | P4 | OP4 | 107.3° | 109.5° |
O4 | P4 | OP5 | 104.9° | 109.5° |
O4 | P4 | OP6 | 106.3° | 109.4° |
O5 | C5 | C6 | 109.9° | 109.5° |
O5 | C5 | H5 | 111.2° | 109.4° |
C5 | O5 | P5 | 121.4° | 106.8° |
C6 | C5 | H5 | 105.5° | 109.5° |
C5 | C6 | O6 | 109.4° | 109.5° |
C5 | C6 | H6 | 106.3° | 109.5° |
O5 | P5 | OP7 | 104.1° | 109.5° |
O5 | P5 | OP8 | 105.7° | 109.5° |
O5 | P5 | OP9 | 105.2° | 109.5° |
O6 | C6 | H6 | 111.5° | 109.5° |
C6 | O6 | HO6 | 109.1° | 106.8° |
OP1 | P1 | OP2 | 114.0° | 109.5° |
OP1 | P1 | OP3 | 112.7° | 109.5° |
OP2 | P1 | OP3 | 112.7° | 109.5° |
P1 | OP2 | HO2 | 105.7° | 106.8° |
P1 | OP3 | HO3 | 106.2° | 106.8° |
O10 | P3 | O11 | 114.2° | 109.4° |
O10 | P3 | O12 | 112.1° | 109.4° |
O11 | P3 | O12 | 112.4° | 109.5° |
P3 | O11 | HOB | 106.7° | 106.8° |
P3 | O12 | HOC | 105.0° | 106.7° |
OP4 | P4 | OP5 | 112.6° | 109.5° |
OP4 | P4 | OP6 | 112.6° | 109.5° |
P4 | OP4 | HO4 | 107.3° | 106.8° |
OP5 | P4 | OP6 | 112.4° | 109.5° |
P4 | OP5 | HO5 | 104.9° | 106.8° |
OP7 | P5 | OP8 | 113.3° | 109.5° |
OP7 | P5 | OP9 | 113.8° | 109.4° |
P5 | OP7 | HO7 | 104.1° | 106.8° |
OP8 | P5 | OP9 | 113.5° | 109.4° |
P5 | OP8 | HO8 | 105.8° | 106.8° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1 | C1 | C2 | C6 | 121.7° | 120.0° |
O1 | C1 | C2 | H1 | 119.7° | 120.0° |
O1 | C1 | C6 | H1 | 119.7° | 120.0° |
O1 | C1 | C2 | O2 | 60.8° | 60.0° |
O1 | C1 | C2 | C3 | 178.9° | 180.0° |
O1 | C1 | C2 | H2 | 59.0° | 60.0° |
O1 | C1 | C6 | C5 | 172.2° | 180.0° |
O1 | C1 | C6 | O6 | 65.3° | 60.0° |
O1 | C1 | C6 | H6 | 55.3° | 60.0° |
C1 | O1 | P1 | OP1 | 161.2° | 60.0° |
C1 | O1 | P1 | OP2 | 40.6° | 180.0° |
C1 | O1 | P1 | OP3 | 79.4° | 60.0° |
C2 | C1 | C6 | H1 | 118.5° | 120.0° |
C2 | C1 | O1 | P1 | 93.5° | 120.0° |
C1 | C2 | O2 | C3 | 120.4° | 120.0° |
C1 | C2 | O2 | H2 | 119.6° | 120.0° |
C1 | C2 | C3 | H2 | 119.6° | 120.1° |
C1 | C2 | O2 | HO | 180.0° | 60.1° |
C1 | C2 | C3 | O3 | 177.0° | 180.0° |
C1 | C2 | C3 | C4 | 60.5° | 59.9° |
C1 | C2 | C3 | H3 | 57.6° | 60.0° |
C2 | C1 | C6 | C5 | 50.3° | 60.0° |
C2 | C1 | C6 | O6 | 172.9° | 180.0° |
C2 | C1 | C6 | H6 | 66.6° | 60.0° |
C6 | C1 | O1 | P1 | 143.8° | 120.1° |
C6 | C1 | C2 | O2 | 60.9° | 60.0° |
C6 | C1 | C2 | C3 | 59.5° | 60.0° |
C6 | C1 | C2 | H2 | 179.4° | 180.0° |
C1 | C6 | C5 | C4 | 41.6° | 60.0° |
C1 | C6 | C5 | O5 | 165.1° | 179.9° |
C1 | C6 | C5 | O6 | 122.4° | 119.9° |
C1 | C6 | C5 | H6 | 117.1° | 120.0° |
C1 | C6 | C5 | H5 | 74.9° | 60.0° |
C1 | C6 | O6 | H6 | 117.4° | 120.0° |
C1 | C6 | O6 | HO6 | 180.0° | 60.1° |
H1 | C1 | O1 | P1 | 25.1° | 0.0° |
H1 | C1 | C2 | O2 | 179.6° | 180.0° |
H1 | C1 | C2 | C3 | 59.2° | 60.0° |
H1 | C1 | C2 | H2 | 60.7° | 60.0° |
H1 | C1 | C6 | C5 | 68.2° | 60.0° |
H1 | C1 | C6 | O6 | 54.4° | 60.0° |
H1 | C1 | C6 | H6 | 174.9° | 180.0° |
O1 | P1 | OP1 | OP2 | 115.0° | 120.0° |
O1 | P1 | OP1 | OP3 | 114.9° | 120.0° |
O1 | P1 | OP2 | OP3 | 115.6° | 120.0° |
O1 | P1 | OP2 | HO2 | 180.0° | 179.9° |
O1 | P1 | OP3 | HO3 | 180.0° | 60.0° |
O2 | C2 | C3 | H2 | 119.7° | 120.0° |
O2 | C2 | C3 | O3 | 62.4° | 60.1° |
O2 | C2 | C3 | C4 | 60.2° | 60.0° |
O2 | C2 | C3 | H3 | 178.2° | 180.0° |
C3 | C2 | O2 | HO | 59.5° | 179.9° |
C2 | C3 | O3 | C4 | 123.5° | 120.1° |
C2 | C3 | O3 | H3 | 118.4° | 120.0° |
C2 | C3 | C4 | H3 | 118.3° | 120.0° |
C2 | C3 | O3 | P3 | 119.9° | 119.9° |
C2 | C3 | C4 | O4 | 174.5° | 60.0° |
C2 | C3 | C4 | C5 | 51.8° | 59.9° |
C2 | C3 | C4 | H4 | 65.7° | 180.0° |
H2 | C2 | O2 | HO | 60.4° | 60.0° |
H2 | C2 | C3 | O3 | 57.4° | 59.9° |
H2 | C2 | C3 | C4 | 179.9° | 180.0° |
H2 | C2 | C3 | H3 | 62.0° | 60.1° |
O3 | C3 | C4 | H3 | 119.4° | 119.9° |
O3 | C3 | C4 | O4 | 63.2° | 60.1° |
O3 | C3 | C4 | C5 | 174.2° | 180.0° |
O3 | C3 | C4 | H4 | 56.7° | 59.9° |
C3 | O3 | P3 | O10 | 179.7° | 60.0° |
C3 | O3 | P3 | O11 | 58.4° | 180.0° |
C3 | O3 | P3 | O12 | 61.1° | 60.0° |
C4 | C3 | O3 | P3 | 116.6° | 120.0° |
C3 | C4 | O4 | C5 | 125.0° | 120.0° |
C3 | C4 | O4 | H4 | 117.3° | 120.0° |
C3 | C4 | C5 | H4 | 117.0° | 120.1° |
C3 | C4 | O4 | P4 | 104.8° | 120.0° |
C3 | C4 | C5 | O5 | 165.8° | 180.0° |
C3 | C4 | C5 | C6 | 42.0° | 59.9° |
C3 | C4 | C5 | H5 | 74.1° | 60.1° |
H3 | C3 | O3 | P3 | 1.5° | 0.1° |
H3 | C3 | C4 | O4 | 56.2° | 179.9° |
H3 | C3 | C4 | C5 | 66.5° | 60.1° |
H3 | C3 | C4 | H4 | 176.0° | 60.0° |
O3 | P3 | O10 | O11 | 116.9° | 120.0° |
O3 | P3 | O10 | O12 | 113.7° | 120.0° |
O3 | P3 | O11 | O12 | 114.5° | 120.1° |
O3 | P3 | O11 | HOB | 180.0° | 180.0° |
O3 | P3 | O12 | HOC | 180.0° | 60.0° |
O4 | C4 | C5 | H4 | 119.9° | 119.9° |
O4 | C4 | C5 | O5 | 71.1° | 60.0° |
O4 | C4 | C5 | C6 | 165.1° | 60.0° |
O4 | C4 | C5 | H5 | 49.0° | 179.9° |
C4 | O4 | P4 | OP4 | 5.0° | 180.0° |
C4 | O4 | P4 | OP5 | 115.0° | 60.0° |
C4 | O4 | P4 | OP6 | 125.7° | 60.0° |
C5 | C4 | O4 | P4 | 130.2° | 120.0° |
C4 | C5 | O5 | C6 | 126.5° | 120.1° |
C4 | C5 | O5 | H5 | 117.0° | 119.9° |
C4 | C5 | C6 | H5 | 116.5° | 120.0° |
C4 | C5 | O5 | P5 | 144.5° | 119.9° |
C4 | C5 | C6 | O6 | 164.0° | 179.9° |
C4 | C5 | C6 | H6 | 75.5° | 60.0° |
H4 | C4 | O4 | P4 | 12.4° | 0.0° |
H4 | C4 | C5 | O5 | 48.8° | 59.9° |
H4 | C4 | C5 | C6 | 75.0° | 180.0° |
H4 | C4 | C5 | H5 | 168.9° | 60.0° |
O4 | P4 | OP4 | OP5 | 114.9° | 120.0° |
O4 | P4 | OP4 | OP6 | 116.6° | 120.0° |
O4 | P4 | OP5 | OP6 | 115.1° | 120.0° |
O4 | P4 | OP4 | HO4 | 180.0° | 180.0° |
O4 | P4 | OP5 | HO5 | 179.9° | 60.0° |
O5 | C5 | C6 | H5 | 120.0° | 120.0° |
O5 | C5 | C6 | O6 | 72.5° | 60.0° |
O5 | C5 | C6 | H6 | 48.0° | 60.0° |
C5 | O5 | P5 | OP7 | 161.6° | 180.0° |
C5 | O5 | P5 | OP8 | 41.9° | 60.0° |
C5 | O5 | P5 | OP9 | 78.5° | 60.0° |
C6 | C5 | O5 | P5 | 89.0° | 120.0° |
C5 | C6 | O6 | H6 | 117.2° | 120.0° |
C5 | C6 | O6 | HO6 | 54.6° | 180.0° |
H5 | C5 | O5 | P5 | 27.5° | 0.0° |
H5 | C5 | C6 | O6 | 47.5° | 59.9° |
H5 | C5 | C6 | H6 | 168.0° | 180.0° |
O5 | P5 | OP7 | OP8 | 114.4° | 120.0° |
O5 | P5 | OP7 | OP9 | 114.0° | 120.0° |
O5 | P5 | OP8 | OP9 | 114.8° | 120.0° |
O5 | P5 | OP7 | HO7 | 179.9° | 180.0° |
O5 | P5 | OP8 | HO8 | 180.0° | 60.0° |
H6 | C6 | O6 | HO6 | 62.6° | 59.9° |
OP1 | P1 | OP2 | OP3 | 130.1° | 120.0° |
OP1 | P1 | OP2 | HO2 | 65.7° | 60.0° |
OP1 | P1 | OP3 | HO3 | 66.0° | 180.0° |
OP2 | P1 | OP3 | HO3 | 64.7° | 60.0° |
OP3 | P1 | OP2 | HO2 | 64.4° | 60.0° |
O10 | P3 | O11 | O12 | 129.2° | 119.9° |
O10 | P3 | O11 | HOB | 63.7° | 60.0° |
O10 | P3 | O12 | HOC | 65.8° | 180.0° |
O11 | P3 | O12 | HOC | 64.4° | 60.1° |
O12 | P3 | O11 | HOB | 65.5° | 59.9° |
OP4 | P4 | OP5 | OP6 | 128.5° | 120.0° |
OP4 | P4 | OP5 | HO5 | 63.7° | 60.0° |
OP5 | P4 | OP4 | HO4 | 65.1° | 60.0° |
OP6 | P4 | OP4 | HO4 | 63.3° | 60.0° |
OP6 | P4 | OP5 | HO5 | 64.8° | 180.0° |
OP7 | P5 | OP8 | OP9 | 131.8° | 119.9° |
OP7 | P5 | OP8 | HO8 | 66.6° | 60.1° |
OP8 | P5 | OP7 | HO7 | 65.6° | 60.0° |
OP9 | P5 | OP7 | HO7 | 66.1° | 59.9° |
OP9 | P5 | OP8 | HO8 | 65.2° | 180.0° |