Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

IPM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.51Å1.54Å
C1O2sing1.34Å1.25Å
C1O3doub1.21Å1.24Å
C2C3sing1.53Å1.58Å
C2O1sing1.43Å1.42Å
C2H2sing1.09Å1.11Å
C3C4sing1.51Å1.53Å
C3C5sing1.53Å1.58Å
C3H3sing1.09Å1.12Å
C4O4doub1.21Å1.25Å
C4O5sing1.34Å1.25Å
C5C6sing1.53Å1.54Å
C5C7sing1.53Å1.53Å
C5H5sing1.09Å1.11Å
C6H61sing1.09Å1.11Å
C6H62sing1.09Å1.12Å
C6H63sing1.09Å1.12Å
C7H71sing1.09Å1.11Å
C7H72sing1.09Å1.11Å
C7H73sing1.09Å1.12Å
O1HO1sing0.97Å0.95Å
O2HO2sing0.97Å0.95Å
O5HO5sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1O2119.2°120.0°
C2C1O3118.7°120.0°
C1C2C3108.8°109.5°
C1C2O1115.8°109.5°
C1C2H2105.8°109.5°
O2C1O3122.1°120.0°
C1O2HO2119.2°120.0°
C3C2O1110.4°109.5°
C3C2H2111.8°109.4°
C2C3C4109.9°109.5°
C2C3C5106.8°109.5°
C2C3H3111.6°109.5°
O1C2H2104.2°109.5°
C2O1HO1115.8°106.8°
C4C3C5111.3°109.4°
C4C3H3107.1°109.5°
C3C4O4119.1°120.0°
C3C4O5119.1°120.0°
C5C3H3110.2°109.5°
C3C5C6111.5°109.5°
C3C5C7112.7°109.5°
C3C5H5106.4°109.5°
O4C4O5121.7°119.9°
C4O5HO5119.1°120.1°
C6C5C7111.5°109.5°
C6C5H5107.8°109.4°
C5C6H61111.6°109.5°
C5C6H62111.5°109.5°
C5C6H63111.5°109.4°
C7C5H5106.5°109.4°
C5C7H71112.7°109.4°
C5C7H72111.0°109.5°
C5C7H73111.0°109.6°
H61C6H62111.4°109.5°
H61C6H63111.5°109.5°
H62C6H6398.9°109.5°
H71C7H72111.1°109.5°
H71C7H73111.0°109.4°
H72C7H7399.3°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1O2O3178.9°179.9°
C1C2C3O1128.1°120.0°
C1C2C3H2116.5°120.0°
C1C2O1H2115.7°120.1°
C1C2C3C464.1°60.0°
C1C2C3C5175.0°180.0°
C1C2C3H354.5°60.0°
C1C2O1HO1180.0°60.0°
C2C1O2HO2180.0°180.0°
O2C1C2C3111.7°60.0°
O2C1C2O113.3°180.0°
O2C1C2H2128.1°60.0°
O3C1C2C367.2°120.0°
O3C1C2O1167.8°0.0°
O3C1C2H253.0°120.1°
O3C1O2HO21.1°0.1°
C3C2O1H2120.1°120.0°
C2C3C4C5118.1°120.0°
C2C3C4H3121.4°120.0°
C2C3C5H3121.4°120.0°
C2C3C4O485.0°120.1°
C2C3C4O593.6°60.1°
C2C3C5C6172.4°60.0°
C2C3C5C746.1°180.0°
C2C3C5H570.3°60.0°
C3C2O1HO155.8°60.0°
O1C2C3C464.0°60.0°
O1C2C3C556.9°60.0°
O1C2C3H3177.4°180.0°
H2C2C3C4179.4°180.0°
H2C2C3C558.6°60.0°
H2C2C3H362.0°60.0°
H2C2O1HO164.3°179.9°
C4C3C5H3118.7°120.0°
C3C4O4O5178.5°179.9°
C4C3C5C667.6°179.9°
C4C3C5C7166.1°60.0°
C4C3C5H549.7°60.0°
C3C4O5HO5180.0°180.0°
C5C3C4O433.1°0.1°
C5C3C4O5148.3°179.9°
C3C5C6C7127.0°120.1°
C3C5C6H5116.5°120.0°
C3C5C7H5116.3°120.1°
C3C5C6H61180.0°180.0°
C3C5C6H6254.7°59.9°
C3C5C6H6354.7°60.1°
C3C5C7H71180.0°60.0°
C3C5C7H7254.7°60.0°
C3C5C7H7354.8°180.0°
H3C3C4O4153.7°119.9°
H3C3C4O527.8°60.0°
H3C3C5C651.0°60.1°
H3C3C5C775.3°60.0°
H3C3C5H5168.3°180.0°
O4C4O5HO51.5°0.1°
C6C5C7H5117.3°119.9°
C5C6H61H62125.3°120.0°
C5C6H61H63125.3°119.9°
C5C6H62H63117.3°119.9°
C6C5C7H7153.6°60.0°
C6C5C7H72179.0°180.0°
C6C5C7H7371.6°60.0°
C7C5C6H6153.0°59.9°
C7C5C6H6272.2°180.0°
C7C5C6H63178.3°60.0°
C5C7H71H72125.3°120.0°
C5C7H71H73125.2°120.1°
C5C7H72H73116.9°120.1°
H5C5C6H6163.5°60.0°
H5C5C6H62171.2°60.1°
H5C5C6H6361.8°179.9°
H5C5C7H7163.7°179.9°
H5C5C7H7261.6°60.1°
H5C5C7H73171.1°59.9°
H61C6H62H63117.3°120.0°
H71C7H72H73116.9°119.9°

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon