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IOT

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PAO1Adoub1.48Å1.54Å
PAO2Asing1.61Å1.55Å
PAO5'sing1.61Å1.41Å
PAOX2sing1.61Å1.58Å
O2AHO2sing0.97Å0.95Å
O5'C5'sing1.43Å1.49Å
C5'C4'sing1.53Å1.44Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.11Å
C4'O4'sing1.44Å1.44Å
C4'C3'sing1.54Å1.56Å
C4'H4'sing1.09Å1.11Å
O4'C1'sing1.44Å1.43Å
C3'O3'sing1.43Å1.36Å
C3'C2'sing1.55Å1.52Å
C3'H3'sing1.09Å1.12Å
O3'HO'3sing0.97Å0.95Å
C2'O2'sing1.43Å1.46Å
C2'C1'sing1.55Å1.48Å
C2'H2'sing1.09Å1.11Å
O2'HO'2sing0.97Å0.95Å
C1'N9sing1.47Å1.42Å
C1'H1'sing1.09Å1.11Å
N9C8sing1.36Å1.43ÅAromatic
N9C4sing1.37Å1.40ÅAromatic
C8N7doub1.30Å1.31ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.35Å1.39ÅAromatic
C5C6doub1.41Å1.50ÅAromatic
C5C4sing1.40Å1.45ÅAromatic
C6N6sing1.38Å1.23Å
C6N1sing1.33Å1.44ÅAromatic
N6H61sing0.97Å1.02Å
N6H62sing0.97Å1.02Å
N1C2doub1.32Å1.44ÅAromatic
C2N3sing1.32Å1.37ÅAromatic
C2H2sing1.08Å1.10Å
N3C4doub1.33Å1.44ÅAromatic
CXCWsing1.51Å1.13Å
CXNXsing1.47Å1.71Å
CXHCX1sing1.09Å1.12Å
CXHCX2sing1.09Å1.11Å
CWOX1doub1.21Å1.37Å
CWOX2sing1.34Å1.37Å
NXCAsing1.47Å1.50Å
NXHNXsing1.01Å1.02Å
CACBsing1.53Å1.55Å
CACsing1.51Å1.54Å
CAHAsing1.09Å1.12Å
CBCGsing1.53Å1.50Å
CBHB1sing1.09Å1.11Å
CBHB2sing1.09Å1.12Å
CGCDsing1.53Å1.48Å
CGHG1sing1.09Å1.12Å
CGHG2sing1.09Å1.12Å
CDNEsing1.46Å1.43Å
CDHD1sing1.09Å1.12Å
CDHD2sing1.09Å1.11Å
NECZsing1.38Å1.33Å
NEHEsing0.97Å1.02Å
CZNH1doub1.30Å1.33Å
CZNH2sing1.37Å1.31Å
NH1HH11sing0.97Å1.02Å
NH2HH21sing0.97Å1.02Å
NH2HH22sing0.97Å1.02Å
COdoub1.21Å1.25Å
COX3sing1.34Å1.25Å
OX3HX3sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1APAO2A118.7°109.5°
O1APAO5'131.1°109.5°
O1APAOX2120.2°109.4°
O2APAO5'88.0°109.5°
O2APAOX2106.8°109.5°
PAO2AHO2118.7°106.8°
O5'PAOX284.1°109.5°
PAO5'C5'118.6°106.8°
PAOX2CW141.6°120.0°
O5'C5'C4'137.8°109.5°
O5'C5'H5'1102.5°109.4°
O5'C5'H5'2102.5°109.5°
C4'C5'H5'1102.6°109.5°
C4'C5'H5'2102.6°109.5°
C5'C4'O4'101.3°109.9°
C5'C4'C3'120.0°109.9°
C5'C4'H4'107.3°109.8°
H5'1C5'H5'2105.7°109.5°
O4'C4'C3'106.5°107.4°
O4'C4'H4'120.7°109.9°
C4'O4'C1'114.5°107.0°
C3'C4'H4'102.2°109.9°
C4'C3'O3'120.0°110.8°
C4'C3'C2'101.7°104.0°
C4'C3'H3'110.8°110.4°
O4'C1'C2'103.9°103.5°
O4'C1'N9111.6°110.6°
O4'C1'H1'110.9°110.6°
O3'C3'C2'116.4°110.5°
O3'C3'H3'93.7°110.4°
C3'O3'HO'3120.0°106.9°
C2'C3'H3'114.8°110.5°
C3'C2'O2'106.8°110.9°
C3'C2'C1'112.1°102.1°
C3'C2'H2'109.1°111.0°
O2'C2'C1'108.3°110.9°
O2'C2'H2'112.9°110.8°
C2'O2'HO'2106.8°106.8°
C1'C2'H2'107.6°110.9°
C2'C1'N9107.0°110.8°
C2'C1'H1'115.3°110.6°
N9C1'H1'108.0°110.5°
C1'N9C8129.6°126.3°
C1'N9C4127.3°126.3°
C8N9C4103.1°107.4°
N9C8N7116.0°110.0°
N9C8H8125.9°125.0°
N9C4C5106.4°106.0°
N9C4N3127.6°135.0°
N7C8H8118.1°125.0°
C8N7C5104.1°109.4°
N7C5C6132.2°134.7°
N7C5C4110.3°107.1°
C6C5C4117.5°118.2°
C5C6N6124.3°120.8°
C5C6N1113.0°118.4°
C5C4N3126.0°119.0°
N6C6N1122.7°120.8°
C6N6H61124.3°120.0°
C6N6H62106.9°120.0°
C6N1C2126.8°121.2°
H61N6H62107.1°120.0°
N1C2N3120.6°122.4°
N1C2H2122.5°118.8°
N3C2H2116.9°118.8°
C2N3C4116.1°120.7°
CWCXNX109.8°109.5°
CWCXHCX1112.1°109.5°
CWCXHCX2112.1°109.5°
CXCWOX1122.2°120.0°
CXCWOX2127.8°120.0°
NXCXHCX1112.1°109.4°
NXCXHCX2112.1°109.4°
CXNXCA120.4°106.8°
CXNXHNX108.2°106.7°
HCX1CXHCX298.3°109.5°
OX1CWOX2109.0°120.0°
CANXHNX108.3°106.7°
NXCACB109.6°109.5°
NXCAC109.9°109.5°
NXCAHA108.9°109.5°
CBCAC109.0°109.5°
CBCAHA109.8°109.5°
CACBCG114.6°109.5°
CACBHB1110.3°109.5°
CACBHB2110.4°109.4°
CCAHA109.6°109.5°
CACO117.9°120.1°
CACOX3119.1°120.0°
CGCBHB1110.3°109.5°
CGCBHB2110.3°109.5°
CBCGCD109.2°109.4°
CBCGHG1112.3°109.5°
CBCGHG2112.3°109.5°
HB1CBHB2100.0°109.5°
CDCGHG1112.3°109.5°
CDCGHG2112.3°109.5°
CGCDNE112.9°109.4°
CGCDHD1110.9°109.5°
CGCDHD2111.0°109.5°
HG1CGHG298.1°109.4°
NECDHD1110.9°109.4°
NECDHD2111.0°109.4°
CDNECZ124.3°120.0°
CDNEHE107.0°120.0°
HD1CDHD299.4°109.5°
CZNEHE107.0°120.0°
NECZNH1122.6°120.0°
NECZNH2117.7°120.0°
NH1CZNH2119.7°120.0°
CZNH1HH1193.2°120.0°
CZNH2HH21117.7°120.0°
CZNH2HH22109.3°120.0°
HH21NH2HH22109.2°120.0°
OCOX3123.0°119.9°
COX3HX3119.2°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1APAO2AO5'136.9°120.0°
O1APAO2AOX2139.8°120.0°
O1APAO5'OX2125.6°120.0°
O1APAO2AHO2180.0°180.0°
O1APAO5'C5'30.7°60.0°
O1APAOX2CW43.1°60.0°
O2APAO5'OX2107.1°120.0°
O2APAO5'C5'158.1°60.0°
O2APAOX2CW96.0°60.0°
O5'PAO2AHO243.1°60.0°
PAO5'C5'C4'120.9°180.0°
PAO5'C5'H5'14.4°60.0°
PAO5'C5'H5'2113.8°60.0°
O5'PAOX2CW177.9°180.0°
OX2PAO2AHO240.2°60.0°
OX2PAO5'C5'94.8°179.9°
PAOX2CWCX149.2°180.0°
PAOX2CWOX142.3°0.0°
O5'C5'C4'H5'1125.3°119.9°
O5'C5'C4'H5'2125.3°120.0°
O5'C5'H5'1H5'2107.0°120.0°
O5'C5'C4'O4'72.7°61.7°
O5'C5'C4'C3'44.1°179.7°
O5'C5'C4'H4'159.9°59.4°
C4'C5'H5'1H5'2107.1°120.0°
C5'C4'O4'C3'126.3°119.5°
C5'C4'O4'H4'118.1°121.0°
C5'C4'C3'H4'118.4°121.0°
C5'C4'O4'C1'130.1°146.0°
C5'C4'C3'O3'106.6°119.8°
C5'C4'C3'C2'123.3°121.4°
C5'C4'C3'H3'0.8°2.9°
H5'1C5'C4'O4'162.0°58.3°
H5'1C5'C4'C3'81.2°59.7°
H5'1C5'C4'H4'34.6°179.3°
H5'2C5'C4'O4'52.5°178.3°
H5'2C5'C4'C3'169.4°60.3°
H5'2C5'C4'H4'74.9°60.7°
O4'C4'C3'H4'127.5°119.5°
O4'C4'C3'O3'139.3°120.7°
O4'C4'C3'C2'9.2°1.9°
O4'C4'C3'H3'113.3°116.6°
C4'O4'C1'C2'3.6°40.1°
C4'O4'C1'N9111.4°158.7°
C4'O4'C1'H1'128.1°78.5°
C3'C4'O4'C1'3.8°26.5°
C4'C3'O3'C2'123.2°114.8°
C4'C3'O3'H3'116.6°122.7°
C4'C3'C2'H3'119.6°118.5°
C4'C3'O3'HO'3179.9°176.2°
C4'C3'C2'O2'106.5°139.2°
C4'C3'C2'C1'12.0°21.0°
C4'C3'C2'H2'131.1°97.2°
H4'C4'O4'C1'111.8°93.0°
H4'C4'C3'O3'11.8°1.2°
H4'C4'C3'C2'118.3°117.6°
H4'C4'C3'H3'119.2°123.8°
O4'C1'C2'C3'10.0°37.1°
O4'C1'C2'O2'107.6°155.3°
O4'C1'C2'N9118.2°118.5°
O4'C1'C2'H1'121.6°118.5°
O4'C1'C2'H2'130.1°81.2°
O4'C1'N9H1'122.2°122.9°
O4'C1'N9C836.6°28.5°
O4'C1'N9C4142.7°151.7°
O3'C3'C2'H3'108.1°122.5°
O3'C3'C2'O2'25.8°20.2°
O3'C3'C2'C1'144.3°98.0°
O3'C3'C2'H2'96.6°143.8°
C2'C3'O3'HO'356.9°61.4°
C3'C2'O2'C1'121.0°112.7°
C3'C2'O2'H2'120.0°123.7°
C3'C2'C1'H2'120.0°118.3°
C3'C2'O2'HO'2180.0°67.2°
C3'C2'C1'N9108.2°155.7°
C3'C2'C1'H1'131.6°81.4°
H3'C3'O3'HO'363.3°61.2°
H3'C3'C2'O2'133.9°102.3°
H3'C3'C2'C1'107.6°139.5°
H3'C3'C2'H2'11.5°21.3°
O2'C2'C1'H2'122.4°123.5°
O2'C2'C1'N9134.2°86.1°
O2'C2'C1'H1'14.0°36.8°
C1'C2'O2'HO'259.1°180.0°
C2'C1'N9H1'124.8°123.0°
C2'C1'N9C876.4°85.6°
C2'C1'N9C4104.3°94.1°
H2'C2'O2'HO'260.0°56.5°
H2'C2'C1'N911.8°37.4°
H2'C2'C1'H1'108.3°160.3°
C1'N9C8C4179.4°179.8°
C1'N9C8N7179.5°180.0°
C1'N9C8H80.5°0.1°
C1'N9C4C5179.9°179.8°
C1'N9C4N31.0°0.8°
H1'C1'N9C8158.8°151.4°
H1'C1'N9C420.4°28.9°
N9C8N7H8180.0°179.9°
N9C8N7C50.5°0.1°
C8N9C4C50.7°0.4°
C8N9C4N3179.6°179.4°
C4N9C8N70.1°0.2°
C4N9C8H8179.9°179.7°
N9C4C5N71.0°0.4°
N9C4C5C6180.0°179.9°
N9C4C5N3178.9°179.2°
N9C4N3C2179.3°179.6°
C8N7C5C6179.7°179.9°
C8N7C5C40.9°0.3°
H8C8N7C5179.5°180.0°
N7C5C6C4178.8°179.6°
N7C5C6N60.8°0.1°
N7C5C6N1180.0°179.9°
N7C5C4N3180.0°179.7°
C5C6N6N1179.1°180.0°
C5C6N6H61180.0°180.0°
C5C6N6H6254.7°0.0°
C5C6N1C21.3°0.0°
C6C5C4N31.0°0.6°
C4C5C6N6179.6°179.7°
C4C5C6N11.2°0.3°
C5C4N3C20.6°0.6°
C6N6H61H62125.3°180.0°
N6C6N1C2179.5°180.0°
N1C6N6H610.9°0.0°
N1C6N6H62124.4°180.0°
C6N1C2N30.9°0.0°
C6N1C2H2179.1°179.9°
N1C2N3H2180.0°179.9°
N1C2N3C40.5°0.3°
H2C2N3C4179.5°179.8°
CWCXNXHCX1125.2°120.0°
CWCXNXHCX2125.3°120.0°
CWCXHCX1HCX2118.0°120.0°
CXCWOX1OX2169.2°180.0°
CWCXNXCA76.2°180.0°
CWCXNXHNX49.1°66.2°
NXCXHCX1HCX2118.0°119.9°
NXCXCWOX1125.1°0.0°
NXCXCWOX267.9°180.0°
CXNXCAHNX125.2°113.9°
CXNXCACB107.4°150.0°
CXNXCAC132.8°90.0°
CXNXCAHA12.7°30.0°
HCX1CXCWOX10.2°120.0°
HCX1CXCWOX2166.9°60.0°
HCX1CXNXCA49.0°60.0°
HCX1CXNXHNX174.3°173.8°
HCX2CXCWOX1109.6°120.0°
HCX2CXCWOX257.4°60.0°
HCX2CXNXCA158.5°60.0°
HCX2CXNXHNX76.3°53.9°
NXCACBC120.3°120.0°
NXCACBHA119.6°120.0°
NXCACHA119.6°120.0°
NXCACBCG110.8°60.0°
NXCACBHB114.4°180.0°
NXCACBHB2123.9°60.0°
NXCACO0.2°150.0°
NXCACOX3179.7°30.0°
HNXNXCACB127.3°96.1°
HNXNXCAC7.6°23.9°
HNXNXCAHA112.5°143.8°
CBCACHA120.2°120.0°
CACBCGHB1125.2°120.0°
CACBCGHB2125.3°120.0°
CACBHB1HB2116.2°120.0°
CACBCGCD178.2°180.0°
CACBCGHG156.5°60.0°
CACBCGHG252.9°60.0°
CBCACO119.9°90.0°
CBCACOX360.1°90.0°
CCACBCG128.8°180.0°
CCACBHB1105.9°60.0°
CCACBHB23.6°60.0°
CACOOX3179.9°180.0°
CACOX3HX3180.0°179.9°
HACACBCG8.8°60.0°
HACACBHB1134.0°60.0°
HACACBHB2116.4°179.9°
HACACO119.9°30.0°
HACACOX360.1°150.0°
CGCBHB1HB2116.1°120.0°
CBCGCDHG1125.3°120.0°
CBCGCDHG2125.3°120.0°
CBCGHG1HG2118.2°120.0°
CBCGCDNE90.5°180.0°
CBCGCDHD1144.3°60.1°
CBCGCDHD234.8°60.1°
HB1CBCGCD52.9°60.0°
HB1CBCGHG1178.2°180.0°
HB1CBCGHG272.3°60.0°
HB2CBCGCD56.5°60.0°
HB2CBCGHG168.7°60.0°
HB2CBCGHG2178.2°180.0°
CDCGHG1HG2118.2°120.0°
CGCDNEHD1125.2°120.0°
CGCDNEHD2125.3°120.0°
CGCDHD1HD2116.8°120.1°
CGCDNECZ172.1°180.0°
CGCDNEHE46.9°0.1°
HG1CGCDNE34.8°60.0°
HG1CGCDHD190.4°179.9°
HG1CGCDHD2160.1°59.9°
HG2CGCDNE144.2°60.0°
HG2CGCDHD119.0°59.9°
HG2CGCDHD290.4°179.9°
NECDHD1HD2116.8°119.9°
CDNECZHE125.2°179.9°
CDNECZNH169.2°0.1°
CDNECZNH2110.0°180.0°
HD1CDNECZ46.9°60.0°
HD1CDNEHE78.4°120.1°
HD2CDNECZ62.6°60.0°
HD2CDNEHE172.2°119.9°
NECZNH1NH2179.2°180.0°
NECZNH1HH11109.6°0.0°
NECZNH2HH21179.9°179.9°
NECZNH2HH2254.7°0.3°
HENECZNH1165.6°179.9°
HENECZNH215.2°0.1°
NH1CZNH2HH210.7°0.0°
NH1CZNH2HH22124.5°179.7°
NH2CZNH1HH1171.2°180.0°
CZNH2HH21HH22125.3°179.6°
OCOX3HX30.0°0.0°

222415

PDB entries from 2024-07-10

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