IMR
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O5' | C5' | sing | 1.43Å | 1.42Å | |
O5' | HO'5 | sing | 0.97Å | 0.95Å | |
C5' | C4' | sing | 1.53Å | 1.48Å | |
C5' | H5'1 | sing | 1.09Å | 1.11Å | |
C5' | H5'2 | sing | 1.09Å | 1.12Å | |
C4' | N4' | sing | 1.48Å | 1.44Å | |
C4' | C3' | sing | 1.54Å | 1.51Å | |
C4' | H4' | sing | 1.09Å | 1.12Å | |
N4' | C1' | sing | 1.48Å | 1.43Å | |
N4' | HN'4 | sing | 1.01Å | 1.02Å | |
C3' | O3' | sing | 1.43Å | 1.44Å | |
C3' | C2' | sing | 1.55Å | 1.48Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | HO'3 | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.43Å | 1.43Å | |
C2' | C1' | sing | 1.55Å | 1.54Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
O2' | HO'2 | sing | 0.97Å | 0.95Å | |
C1' | H1'1 | sing | 1.09Å | 1.12Å | |
C1' | H1'2 | sing | 1.09Å | 1.11Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C5' | O5' | HO'5 | 107.6° | 106.9° |
O5' | C5' | C4' | 107.5° | 109.5° |
O5' | C5' | H5'1 | 112.9° | 109.5° |
O5' | C5' | H5'2 | 112.9° | 109.5° |
C4' | C5' | H5'1 | 112.9° | 109.4° |
C4' | C5' | H5'2 | 112.9° | 109.4° |
C5' | C4' | N4' | 113.4° | 109.9° |
C5' | C4' | C3' | 112.3° | 109.9° |
C5' | C4' | H4' | 103.8° | 109.9° |
H5'1 | C5' | H5'2 | 97.6° | 109.5° |
N4' | C4' | C3' | 106.3° | 107.3° |
N4' | C4' | H4' | 110.0° | 109.9° |
C4' | N4' | C1' | 112.1° | 105.8° |
C4' | N4' | HN'4 | 111.2° | 106.7° |
C3' | C4' | H4' | 111.2° | 109.9° |
C4' | C3' | O3' | 105.4° | 110.7° |
C4' | C3' | C2' | 102.4° | 104.9° |
C4' | C3' | H3' | 117.4° | 110.3° |
C1' | N4' | HN'4 | 111.3° | 106.7° |
N4' | C1' | C2' | 103.1° | 103.2° |
N4' | C1' | H1'1 | 114.6° | 110.7° |
N4' | C1' | H1'2 | 114.6° | 110.7° |
O3' | C3' | C2' | 112.5° | 110.3° |
O3' | C3' | H3' | 108.1° | 110.2° |
C3' | O3' | HO'3 | 105.5° | 106.9° |
C2' | C3' | H3' | 110.9° | 110.3° |
C3' | C2' | O2' | 110.5° | 110.8° |
C3' | C2' | C1' | 107.9° | 102.9° |
C3' | C2' | H2' | 110.5° | 110.8° |
O2' | C2' | C1' | 111.3° | 110.8° |
O2' | C2' | H2' | 107.0° | 110.7° |
C2' | O2' | HO'2 | 110.5° | 106.8° |
C1' | C2' | H2' | 109.7° | 110.7° |
C2' | C1' | H1'1 | 114.6° | 110.7° |
C2' | C1' | H1'2 | 114.7° | 110.6° |
H1'1 | C1' | H1'2 | 95.9° | 110.7° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O5' | C5' | C4' | H5'1 | 125.3° | 120.0° |
O5' | C5' | C4' | H5'2 | 125.2° | 120.0° |
O5' | C5' | H5'1 | H5'2 | 118.9° | 120.0° |
O5' | C5' | C4' | N4' | 59.4° | 61.8° |
O5' | C5' | C4' | C3' | 179.9° | 179.7° |
O5' | C5' | C4' | H4' | 60.0° | 59.3° |
HO'5 | O5' | C5' | C4' | 180.0° | 180.0° |
HO'5 | O5' | C5' | H5'1 | 54.8° | 60.0° |
HO'5 | O5' | C5' | H5'2 | 54.8° | 60.0° |
C4' | C5' | H5'1 | H5'2 | 118.8° | 119.9° |
C5' | C4' | N4' | C3' | 123.8° | 119.5° |
C5' | C4' | N4' | H4' | 115.7° | 121.1° |
C5' | C4' | C3' | H4' | 115.8° | 121.1° |
C5' | C4' | N4' | C1' | 106.5° | 144.7° |
C5' | C4' | N4' | HN'4 | 18.8° | 101.9° |
C5' | C4' | C3' | O3' | 144.8° | 120.5° |
C5' | C4' | C3' | C2' | 97.3° | 120.6° |
C5' | C4' | C3' | H3' | 24.4° | 1.8° |
H5'1 | C5' | C4' | N4' | 65.8° | 58.2° |
H5'1 | C5' | C4' | C3' | 54.6° | 59.6° |
H5'1 | C5' | C4' | H4' | 174.8° | 179.3° |
H5'2 | C5' | C4' | N4' | 175.3° | 178.2° |
H5'2 | C5' | C4' | C3' | 54.9° | 60.3° |
H5'2 | C5' | C4' | H4' | 65.3° | 60.8° |
N4' | C4' | C3' | H4' | 119.7° | 119.5° |
C4' | N4' | C1' | HN'4 | 125.3° | 113.4° |
N4' | C4' | C3' | O3' | 90.7° | 120.1° |
N4' | C4' | C3' | C2' | 27.2° | 1.1° |
N4' | C4' | C3' | H3' | 148.9° | 117.7° |
C4' | N4' | C1' | C2' | 0.0° | 39.2° |
C4' | N4' | C1' | H1'1 | 125.2° | 157.7° |
C4' | N4' | C1' | H1'2 | 125.3° | 79.2° |
C3' | C4' | N4' | C1' | 17.3° | 25.2° |
C3' | C4' | N4' | HN'4 | 142.7° | 138.6° |
C4' | C3' | O3' | C2' | 110.8° | 115.7° |
C4' | C3' | O3' | H3' | 126.3° | 122.3° |
C4' | C3' | C2' | H3' | 126.1° | 118.8° |
C4' | C3' | O3' | HO'3 | 180.0° | 177.1° |
C4' | C3' | C2' | O2' | 149.4° | 140.5° |
C4' | C3' | C2' | C1' | 27.6° | 22.0° |
C4' | C3' | C2' | H2' | 92.3° | 96.3° |
H4' | C4' | N4' | C1' | 137.8° | 94.2° |
H4' | C4' | N4' | HN'4 | 96.8° | 19.1° |
H4' | C4' | C3' | O3' | 29.0° | 0.6° |
H4' | C4' | C3' | C2' | 146.9° | 118.4° |
H4' | C4' | C3' | H3' | 91.4° | 122.9° |
N4' | C1' | C2' | C3' | 17.8° | 37.5° |
N4' | C1' | C2' | O2' | 139.2° | 155.9° |
N4' | C1' | C2' | H1'1 | 125.2° | 118.5° |
N4' | C1' | C2' | H1'2 | 125.3° | 118.4° |
N4' | C1' | C2' | H2' | 102.6° | 80.9° |
N4' | C1' | H1'1 | H1'2 | 120.5° | 123.1° |
HN'4 | N4' | C1' | C2' | 125.3° | 152.5° |
HN'4 | N4' | C1' | H1'1 | 109.4° | 88.9° |
HN'4 | N4' | C1' | H1'2 | 0.0° | 34.2° |
O3' | C3' | C2' | H3' | 121.2° | 122.0° |
O3' | C3' | C2' | O2' | 36.7° | 21.3° |
O3' | C3' | C2' | C1' | 85.1° | 97.2° |
O3' | C3' | C2' | H2' | 155.0° | 144.5° |
C2' | C3' | O3' | HO'3 | 69.2° | 61.4° |
C3' | C2' | O2' | C1' | 119.8° | 113.6° |
C3' | C2' | O2' | H2' | 120.4° | 123.3° |
C3' | C2' | C1' | H2' | 120.4° | 118.4° |
C3' | C2' | O2' | HO'2 | 179.9° | 174.9° |
C3' | C2' | C1' | H1'1 | 107.4° | 156.0° |
C3' | C2' | C1' | H1'2 | 143.1° | 80.9° |
H3' | C3' | O3' | HO'3 | 53.7° | 60.6° |
H3' | C3' | C2' | O2' | 84.5° | 100.7° |
H3' | C3' | C2' | C1' | 153.6° | 140.8° |
H3' | C3' | C2' | H2' | 33.7° | 22.5° |
O2' | C2' | C1' | H2' | 118.2° | 123.1° |
O2' | C2' | C1' | H1'1 | 14.0° | 85.6° |
O2' | C2' | C1' | H1'2 | 95.5° | 37.5° |
C1' | C2' | O2' | HO'2 | 60.1° | 61.3° |
C2' | C1' | H1'1 | H1'2 | 120.5° | 123.0° |
H2' | C2' | O2' | HO'2 | 59.7° | 61.8° |
H2' | C2' | C1' | H1'1 | 132.2° | 37.6° |
H2' | C2' | C1' | H1'2 | 22.7° | 160.7° |