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IMR

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O5'C5'sing1.43Å1.42Å
O5'HO'5sing0.97Å0.95Å
C5'C4'sing1.53Å1.48Å
C5'H5'1sing1.09Å1.11Å
C5'H5'2sing1.09Å1.12Å
C4'N4'sing1.48Å1.44Å
C4'C3'sing1.54Å1.51Å
C4'H4'sing1.09Å1.12Å
N4'C1'sing1.48Å1.43Å
N4'HN'4sing1.01Å1.02Å
C3'O3'sing1.43Å1.44Å
C3'C2'sing1.55Å1.48Å
C3'H3'sing1.09Å1.11Å
O3'HO'3sing0.97Å0.95Å
C2'O2'sing1.43Å1.43Å
C2'C1'sing1.55Å1.54Å
C2'H2'sing1.09Å1.11Å
O2'HO'2sing0.97Å0.95Å
C1'H1'1sing1.09Å1.12Å
C1'H1'2sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C5'O5'HO'5107.6°106.9°
O5'C5'C4'107.5°109.5°
O5'C5'H5'1112.9°109.5°
O5'C5'H5'2112.9°109.5°
C4'C5'H5'1112.9°109.4°
C4'C5'H5'2112.9°109.4°
C5'C4'N4'113.4°109.9°
C5'C4'C3'112.3°109.9°
C5'C4'H4'103.8°109.9°
H5'1C5'H5'297.6°109.5°
N4'C4'C3'106.3°107.3°
N4'C4'H4'110.0°109.9°
C4'N4'C1'112.1°105.8°
C4'N4'HN'4111.2°106.7°
C3'C4'H4'111.2°109.9°
C4'C3'O3'105.4°110.7°
C4'C3'C2'102.4°104.9°
C4'C3'H3'117.4°110.3°
C1'N4'HN'4111.3°106.7°
N4'C1'C2'103.1°103.2°
N4'C1'H1'1114.6°110.7°
N4'C1'H1'2114.6°110.7°
O3'C3'C2'112.5°110.3°
O3'C3'H3'108.1°110.2°
C3'O3'HO'3105.5°106.9°
C2'C3'H3'110.9°110.3°
C3'C2'O2'110.5°110.8°
C3'C2'C1'107.9°102.9°
C3'C2'H2'110.5°110.8°
O2'C2'C1'111.3°110.8°
O2'C2'H2'107.0°110.7°
C2'O2'HO'2110.5°106.8°
C1'C2'H2'109.7°110.7°
C2'C1'H1'1114.6°110.7°
C2'C1'H1'2114.7°110.6°
H1'1C1'H1'295.9°110.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O5'C5'C4'H5'1125.3°120.0°
O5'C5'C4'H5'2125.2°120.0°
O5'C5'H5'1H5'2118.9°120.0°
O5'C5'C4'N4'59.4°61.8°
O5'C5'C4'C3'179.9°179.7°
O5'C5'C4'H4'60.0°59.3°
HO'5O5'C5'C4'180.0°180.0°
HO'5O5'C5'H5'154.8°60.0°
HO'5O5'C5'H5'254.8°60.0°
C4'C5'H5'1H5'2118.8°119.9°
C5'C4'N4'C3'123.8°119.5°
C5'C4'N4'H4'115.7°121.1°
C5'C4'C3'H4'115.8°121.1°
C5'C4'N4'C1'106.5°144.7°
C5'C4'N4'HN'418.8°101.9°
C5'C4'C3'O3'144.8°120.5°
C5'C4'C3'C2'97.3°120.6°
C5'C4'C3'H3'24.4°1.8°
H5'1C5'C4'N4'65.8°58.2°
H5'1C5'C4'C3'54.6°59.6°
H5'1C5'C4'H4'174.8°179.3°
H5'2C5'C4'N4'175.3°178.2°
H5'2C5'C4'C3'54.9°60.3°
H5'2C5'C4'H4'65.3°60.8°
N4'C4'C3'H4'119.7°119.5°
C4'N4'C1'HN'4125.3°113.4°
N4'C4'C3'O3'90.7°120.1°
N4'C4'C3'C2'27.2°1.1°
N4'C4'C3'H3'148.9°117.7°
C4'N4'C1'C2'0.0°39.2°
C4'N4'C1'H1'1125.2°157.7°
C4'N4'C1'H1'2125.3°79.2°
C3'C4'N4'C1'17.3°25.2°
C3'C4'N4'HN'4142.7°138.6°
C4'C3'O3'C2'110.8°115.7°
C4'C3'O3'H3'126.3°122.3°
C4'C3'C2'H3'126.1°118.8°
C4'C3'O3'HO'3180.0°177.1°
C4'C3'C2'O2'149.4°140.5°
C4'C3'C2'C1'27.6°22.0°
C4'C3'C2'H2'92.3°96.3°
H4'C4'N4'C1'137.8°94.2°
H4'C4'N4'HN'496.8°19.1°
H4'C4'C3'O3'29.0°0.6°
H4'C4'C3'C2'146.9°118.4°
H4'C4'C3'H3'91.4°122.9°
N4'C1'C2'C3'17.8°37.5°
N4'C1'C2'O2'139.2°155.9°
N4'C1'C2'H1'1125.2°118.5°
N4'C1'C2'H1'2125.3°118.4°
N4'C1'C2'H2'102.6°80.9°
N4'C1'H1'1H1'2120.5°123.1°
HN'4N4'C1'C2'125.3°152.5°
HN'4N4'C1'H1'1109.4°88.9°
HN'4N4'C1'H1'20.0°34.2°
O3'C3'C2'H3'121.2°122.0°
O3'C3'C2'O2'36.7°21.3°
O3'C3'C2'C1'85.1°97.2°
O3'C3'C2'H2'155.0°144.5°
C2'C3'O3'HO'369.2°61.4°
C3'C2'O2'C1'119.8°113.6°
C3'C2'O2'H2'120.4°123.3°
C3'C2'C1'H2'120.4°118.4°
C3'C2'O2'HO'2179.9°174.9°
C3'C2'C1'H1'1107.4°156.0°
C3'C2'C1'H1'2143.1°80.9°
H3'C3'O3'HO'353.7°60.6°
H3'C3'C2'O2'84.5°100.7°
H3'C3'C2'C1'153.6°140.8°
H3'C3'C2'H2'33.7°22.5°
O2'C2'C1'H2'118.2°123.1°
O2'C2'C1'H1'114.0°85.6°
O2'C2'C1'H1'295.5°37.5°
C1'C2'O2'HO'260.1°61.3°
C2'C1'H1'1H1'2120.5°123.0°
H2'C2'O2'HO'259.7°61.8°
H2'C2'C1'H1'1132.2°37.6°
H2'C2'C1'H1'222.7°160.7°

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PDB entries from 2024-07-17

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