Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

IEM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.47Å1.43Å
C1O1Adoub1.21Å1.37Å
C1O1Bsing1.35Å1.29Å
C2C3doub1.33Å1.57Å
C2O6sing1.36Å1.30Å
C3C4sing1.50Å1.57Å
C3H3sing1.08Å1.08Å
C4C5sing1.53Å1.55Å
C4O4sing1.43Å1.43Å
C4H4sing1.09Å1.10Å
C5C6sing1.53Å1.56Å
C5N5sing1.46Å1.48Å
C5H5sing1.09Å1.10Å
C6O7sing1.43Å1.54Å
C6O6sing1.43Å1.48Å
C6H6sing1.09Å1.10Å
O7C7sing1.43Å1.55Å
C7C8sing1.53Å1.53Å
C7H71sing1.09Å1.10Å
C7H72sing1.09Å1.10Å
C8C9sing1.53Å1.52Å
C8C10sing1.53Å1.52Å
C8H8sing1.09Å1.10Å
C9H91sing1.09Å1.10Å
C9H92sing1.09Å1.10Å
C9H93sing1.09Å1.10Å
C10H101sing1.09Å1.10Å
C10H102sing1.09Å1.10Å
C10H103sing1.09Å1.10Å
C11C12sing1.51Å1.51Å
C11N5sing1.35Å1.35Å
C11O11doub1.21Å1.38Å
C12H121sing1.09Å1.10Å
C12H122sing1.09Å1.10Å
C12H123sing1.09Å1.10Å
N5HN5sing0.97Å1.00Å
O4HO4sing0.97Å0.95Å
O1BHO1Bsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1O1A122.1°120.0°
C2C1O1B120.3°120.0°
C1C2C3121.8°118.5°
C1C2O6116.5°118.5°
O1AC1O1B117.6°120.0°
C1O1BHO1B109.5°117.0°
C3C2O6121.7°123.0°
C2C3C4110.1°122.3°
C2C3H3125.0°118.8°
C2O6C6120.2°117.7°
C4C3H3125.0°118.9°
C3C4C5113.9°109.5°
C3C4O4107.7°109.5°
C3C4H4107.5°109.5°
C5C4O4110.6°109.4°
C5C4H4107.7°109.5°
C4C5C6106.5°108.2°
C4C5N5108.3°109.7°
C4C5H5109.5°109.7°
O4C4H4109.3°109.5°
C4O4HO4109.5°114.0°
C6C5N5112.9°109.7°
C6C5H5109.4°109.8°
C5C6O7115.1°109.7°
C5C6O6108.3°108.4°
C5C6H6108.4°109.7°
N5C5H5110.3°109.8°
C5N5C11125.6°120.0°
C5N5HN5117.2°120.0°
O7C6O6106.9°109.7°
O7C6H6108.6°109.7°
C6O7C7113.0°114.0°
O6C6H6109.3°109.5°
O7C7C8111.4°109.4°
O7C7H71109.0°109.4°
O7C7H72109.0°109.5°
C8C7H71109.0°109.5°
C8C7H72109.0°109.5°
C7C8C9108.4°109.5°
C7C8C10109.3°109.5°
C7C8H8109.1°109.5°
H71C7H72109.4°109.5°
C9C8C10111.5°109.5°
C9C8H8109.3°109.4°
C8C9H91109.5°109.5°
C8C9H92109.4°109.5°
C8C9H93109.4°109.4°
C10C8H8109.2°109.5°
C8C10H101109.5°109.5°
C8C10H102109.4°109.5°
C8C10H103109.5°109.5°
H91C9H92109.5°109.5°
H91C9H93109.5°109.5°
H92C9H93109.5°109.4°
H101C10H102109.5°109.4°
H101C10H103109.5°109.5°
H102C10H103109.5°109.5°
C12C11N5119.2°120.0°
C12C11O11117.2°120.1°
C11C12H121109.5°109.5°
C11C12H122109.5°109.5°
C11C12H123109.5°109.5°
N5C11O11123.6°119.9°
C11N5HN5117.2°120.0°
H121C12H122109.4°109.5°
H121C12H123109.5°109.5°
H122C12H123109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1O1AO1B179.2°179.7°
C1C2C3O6178.0°179.7°
C1C2C3C4157.0°179.6°
C1C2C3H323.0°0.4°
C1C2O6C6146.9°163.6°
C2C1O1BHO1B179.2°180.0°
O1AC1C2C3158.6°0.0°
O1AC1C2O623.3°179.7°
O1AC1O1BHO1B0.0°0.3°
O1BC1C2C322.2°179.7°
O1BC1C2O6155.9°0.6°
C2C3C4H3180.0°180.0°
C2C3C4C537.3°17.6°
C2C3C4O4160.4°137.5°
C2C3C4H482.0°102.5°
C3C2O6C635.0°16.2°
O6C2C3C425.0°0.1°
O6C2C3H3155.0°179.9°
C2O6C6C553.5°47.5°
C2O6C6O7178.1°167.3°
C2O6C6H664.4°72.2°
C3C4C5O4121.5°120.0°
C3C4C5H4119.1°120.0°
C3C4O4H4116.4°120.0°
C3C4C5C657.2°47.2°
C3C4C5N5178.8°166.9°
C3C4C5H560.9°72.5°
C3C4O4HO4180.0°60.0°
H3C3C4C5142.7°162.4°
H3C3C4O419.6°42.5°
H3C3C4H498.0°77.5°
C5C4O4H4118.4°120.0°
C4C5C6N5118.6°119.7°
C4C5C6H5118.2°119.7°
C4C5N5H5119.8°120.6°
C4C5C6O7178.8°177.3°
C4C5C6O661.6°62.9°
C4C5C6H657.0°56.7°
C4C5N5C11119.7°85.0°
C4C5N5HN560.3°95.0°
C5C4O4HO454.9°180.0°
O4C4C5C6178.7°167.2°
O4C4C5N559.6°73.2°
O4C4C5H560.6°47.5°
H4C4C5C661.9°72.8°
H4C4C5N559.7°46.8°
H4C4C5H5180.0°167.5°
H4C4O4HO463.6°60.0°
C6C5N5H5122.7°120.7°
C5C6O7O6120.4°119.0°
C5C6O7H6121.7°120.6°
C5C6O6H6117.9°119.7°
C5C6O7C7179.4°175.1°
C6C5N5C11122.7°156.2°
C6C5N5HN557.2°23.8°
N5C5C6O760.2°57.7°
N5C5C6O6179.8°177.5°
N5C5C6H661.7°63.0°
C5N5C11C12179.6°180.0°
C5N5C11HN5180.0°180.0°
C5N5C11O110.3°0.0°
H5C5C6O763.0°63.0°
H5C5C6O656.6°56.8°
H5C5C6H6175.1°176.4°
H5C5N5C110.1°35.6°
H5C5N5HN5179.9°144.4°
O7C6O6H6117.4°120.5°
C6O7C7C8179.1°180.0°
C6O7C7H7160.6°60.0°
C6O7C7H7258.8°60.0°
O6C6O7C759.0°65.9°
H6C6O7C758.9°54.4°
O7C7C8H71120.3°119.9°
O7C7C8H72120.3°120.0°
O7C7H71H72119.1°120.0°
O7C7C8C9170.1°175.0°
O7C7C8C1068.2°65.0°
O7C7C8H851.1°55.0°
C8C7H71H72119.1°120.0°
C7C8C9C10120.3°120.0°
C7C8C9H8118.8°120.0°
C7C8C10H8119.3°120.0°
C7C8C9H91180.0°60.0°
C7C8C9H9260.0°180.0°
C7C8C9H9360.0°60.0°
C7C8C10H101180.0°60.0°
C7C8C10H10260.0°180.0°
C7C8C10H10360.0°60.0°
H71C7C8C969.6°55.1°
H71C7C8C1052.1°175.1°
H71C7C8H8171.5°64.9°
H72C7C8C949.8°65.0°
H72C7C8C10171.5°55.0°
H72C7C8H869.1°175.0°
C9C8C10H8120.9°120.0°
C8C9H91H92120.0°120.0°
C8C9H91H93120.0°120.0°
C8C9H92H93119.9°119.9°
C9C8C10H10160.2°180.0°
C9C8C10H102179.8°60.0°
C9C8C10H10359.8°60.0°
C10C8C9H9159.7°60.0°
C10C8C9H9260.4°60.0°
C10C8C9H93179.7°180.0°
C8C10H101H102120.0°120.0°
C8C10H101H103120.0°120.0°
C8C10H102H103120.0°120.0°
H8C8C9H9161.2°180.0°
H8C8C9H92178.8°60.0°
H8C8C9H9358.8°60.0°
H8C8C10H10160.7°60.0°
H8C8C10H10259.3°60.0°
H8C8C10H103179.3°180.0°
H91C9H92H93120.0°120.0°
H101C10H102H103120.0°120.0°
C12C11N5O11179.8°180.0°
C11C12H121H122120.0°120.0°
C11C12H121H123120.0°120.0°
C11C12H122H123120.0°120.0°
C12C11N5HN50.4°0.0°
N5C11C12H121179.9°90.0°
N5C11C12H12260.1°150.0°
N5C11C12H12359.9°30.0°
O11C11C12H1210.0°90.0°
O11C11C12H122120.0°30.0°
O11C11C12H123120.0°150.0°
O11C11N5HN5179.7°180.0°
H121C12H122H123120.0°120.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon