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Summary Geometry Related PDB entries

Obsolete: IDT

IDT was replaced with GCD on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.53Å
C1	O1	sing	1.43Å	1.43Å
C1	O5	sing	1.43Å	1.49Å
C1	H1	sing	1.09Å	1.10Å
C2	C3	sing	1.53Å	1.53Å
C2	O2	sing	1.43Å	1.49Å
C2	H2	sing	1.09Å	1.10Å
C3	C4	sing	1.50Å	1.55Å
C3	O3	sing	1.43Å	1.49Å
C3	H3	sing	1.09Å	1.10Å
C4	C5	doub	1.34Å	1.52Å
C4	O4	sing	1.35Å	62.01Å
C5	C6	sing	1.46Å	1.51Å
C5	O5	sing	1.36Å	1.50Å
C6	O6A	doub	1.22Å	1.25Å
C6	O6B	sing	1.35Å	1.24Å
O1	HO1	sing	0.97Å	0.95Å
O2	HO2	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å
O4	HO4	sing	0.97Å	0.95Å
O6B	HOB	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	O1	111.2°	109.7°
C2	C1	O5	112.3°	108.4°
C2	C1	H1	107.8°	109.7°
C1	C2	C3	120.6°	108.3°
C1	C2	O2	109.5°	109.7°
C1	C2	H2	101.7°	109.7°
O1	C1	O5	113.6°	109.7°
O1	C1	H1	106.3°	109.7°
C1	O1	HO1	109.5°	114.0°
O5	C1	H1	105.0°	109.7°
C1	O5	C5	118.5°	117.5°
C3	C2	O2	111.0°	109.7°
C3	C2	H2	99.9°	109.7°
C2	C3	C4	118.0°	109.5°
C2	C3	O3	103.6°	109.5°
C2	C3	H3	106.5°	109.5°
O2	C2	H2	113.5°	109.7°
C2	O2	HO2	109.5°	114.0°
C4	C3	O3	104.9°	109.5°
C4	C3	H3	105.2°	109.5°
C3	C4	C5	117.2°	122.1°
C3	C4	O4	23.3°	118.9°
O3	C3	H3	119.3°	109.5°
C3	O3	HO3	109.5°	114.1°
C5	C4	O4	134.5°	118.9°
C4	C5	C6	116.9°	118.6°
C4	C5	O5	118.7°	122.8°
C4	O4	HO4	23.4°	114.0°
C6	C5	O5	124.1°	118.6°
C5	C6	O6A	114.2°	120.1°
C5	C6	O6B	118.3°	120.0°
O6A	C6	O6B	126.1°	120.0°
C6	O6B	HOB	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	O1	O5	127.9°	118.9°
C2	C1	O1	H1	117.1°	120.5°
C2	C1	O5	H1	116.9°	119.7°
C1	C2	C3	O2	129.9°	119.7°
C1	C2	C3	H2	110.1°	119.7°
C1	C2	O2	H2	112.9°	120.5°
C1	C2	C3	C4	16.4°	47.4°
C1	C2	C3	O3	99.0°	167.4°
C1	C2	C3	H3	134.4°	72.6°
C2	C1	O5	C5	43.6°	48.0°
C2	C1	O1	HO1	64.8°	180.0°
C1	C2	O2	HO2	60.7°	60.0°
O1	C1	O5	H1	115.7°	120.5°
O1	C1	C2	C3	95.2°	176.9°
O1	C1	C2	O2	134.2°	57.1°
O1	C1	C2	H2	13.8°	63.5°
O1	C1	O5	C5	83.7°	167.8°
O5	C1	C2	C3	33.4°	63.4°
O5	C1	C2	O2	97.2°	176.9°
O5	C1	C2	H2	142.5°	56.3°
C1	O5	C5	C4	37.3°	16.7°
C1	O5	C5	C6	149.6°	163.3°
O5	C1	O1	HO1	167.2°	61.0°
H1	C1	C2	C3	148.6°	56.4°
H1	C1	C2	O2	18.0°	63.4°
H1	C1	C2	H2	102.3°	176.1°
H1	C1	O5	C5	160.5°	71.7°
H1	C1	O1	HO1	52.2°	59.5°
C3	C2	O2	H2	111.5°	120.6°
C2	C3	C4	O3	114.7°	120.0°
C2	C3	C4	H3	118.6°	120.0°
C2	C3	O3	H3	118.1°	120.0°
C2	C3	C4	C5	7.6°	17.6°
C2	C3	C4	O4	150.7°	162.5°
C3	C2	O2	HO2	74.9°	178.9°
C2	C3	O3	HO3	51.8°	180.0°
O2	C2	C3	C4	113.5°	167.2°
O2	C2	C3	O3	131.1°	72.8°
O2	C2	C3	H3	4.4°	47.2°
H2	C2	C3	C4	126.5°	72.3°
H2	C2	C3	O3	11.1°	47.7°
H2	C2	C3	H3	115.6°	167.8°
H2	C2	O2	HO2	173.5°	60.6°
C4	C3	O3	H3	117.5°	120.0°
C3	C4	C5	O4	19.5°	179.9°
C3	C4	C5	C6	168.8°	179.6°
C3	C4	C5	O5	17.6°	0.4°
C4	C3	O3	HO3	176.2°	60.0°
C3	C4	O4	HO4	179.9°	174.9°
O3	C3	C4	C5	107.0°	137.6°
O3	C3	C4	O4	36.1°	42.4°
H3	C3	C4	C5	126.3°	102.4°
H3	C3	C4	O4	90.6°	77.5°
H3	C3	O3	HO3	66.3°	60.0°
C4	C5	C6	O5	173.2°	180.0°
C4	C5	C6	O6A	124.2°	93.2°
C4	C5	C6	O6B	43.6°	86.8°
C5	C4	O4	HO4	131.4°	5.1°
O4	C4	C5	C6	149.3°	0.3°
O4	C4	C5	O5	37.1°	179.7°
C5	C6	O6A	O6B	166.6°	180.0°
C5	C6	O6B	HOB	166.1°	180.0°
O5	C5	C6	O6A	49.0°	86.8°
O5	C5	C6	O6B	143.3°	93.2°
O6A	C6	O6B	HOB	0.0°	0.0°

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