English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

IDL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C	N1	doub	1.33Å	1.32Å	Aromatic
C	N2	sing	1.37Å	1.44Å	Aromatic
C	C5	sing	1.41Å	1.37Å	Aromatic
N1	C8	sing	1.34Å	1.34Å	Aromatic
C2	N2	sing	1.36Å	1.38Å	Aromatic
C2	C3	doub	1.35Å	1.37Å	Aromatic
N2	C7	sing	1.37Å	1.48Å	Aromatic
O2	C18	doub	1.21Å	1.21Å
C3	C4	sing	1.41Å	1.37Å	Aromatic
O3	C18	sing	1.34Å	1.23Å
C4	C5	doub	1.36Å	1.38Å	Aromatic
C7	C8	doub	1.35Å	1.37Å	Aromatic
C7	C17	sing	1.51Å	1.50Å
C17	C18	sing	1.51Å	1.48Å
C2	H2	sing	1.08Å	1.08Å
C3	H3	sing	1.08Å	1.08Å
C4	H4	sing	1.08Å	1.08Å
C5	H5	sing	1.08Å	1.08Å
C8	H8	sing	1.08Å	1.08Å
C17	H17	sing	1.09Å	1.10Å
C17	H17A	sing	1.09Å	1.10Å
HO3	O3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N1	C	N2	107.0°	108.0°
N1	C	C5	135.0°	132.3°
C	N1	C8	112.4°	109.2°
N2	C	C5	118.0°	119.6°
C	N2	C2	121.2°	120.4°
C	N2	C7	105.4°	107.0°
C	C5	C4	119.8°	119.4°
C	C5	H5	120.1°	120.4°
N1	C8	C7	110.6°	108.6°
N1	C8	H8	124.7°	125.7°
N2	C2	C3	118.3°	120.6°
C2	N2	C7	133.4°	132.6°
N2	C2	H2	120.8°	119.7°
C2	C3	C4	121.2°	120.3°
C3	C2	H2	120.9°	119.6°
C2	C3	H3	119.4°	119.9°
N2	C7	C8	104.7°	107.2°
N2	C7	C17	128.4°	126.4°
O2	C18	O3	122.2°	120.0°
O2	C18	C17	117.4°	119.9°
C3	C4	C5	121.4°	119.6°
C4	C3	H3	119.4°	119.8°
C3	C4	H4	119.3°	120.2°
O3	C18	C17	120.4°	120.0°
C18	O3	HO3	109.5°	117.1°
C5	C4	H4	119.3°	120.2°
C4	C5	H5	120.1°	120.3°
C8	C7	C17	126.9°	126.4°
C7	C8	H8	124.7°	125.7°
C7	C17	C18	107.2°	109.5°
C7	C17	H17	110.0°	109.5°
C7	C17	H17A	110.0°	109.5°
C18	C17	H17	110.0°	109.4°
C18	C17	H17A	110.0°	109.4°
H17	C17	H17A	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N1	C	N2	C5	178.7°	179.7°
N1	C	N2	C2	179.7°	180.0°
N1	C	N2	C7	1.0°	0.0°
N1	C	C5	C4	178.3°	180.0°
C	N1	C8	C7	1.2°	0.0°
N1	C	C5	H5	1.7°	0.0°
C	N1	C8	H8	178.8°	180.0°
N2	C	N1	C8	1.4°	0.0°
C	N2	C2	C7	178.2°	180.0°
C	N2	C2	C3	2.0°	0.0°
N2	C	C5	C4	0.1°	0.3°
C	N2	C7	C8	0.4°	0.0°
C	N2	C7	C17	179.1°	180.0°
C	N2	C2	H2	178.0°	180.0°
N2	C	C5	H5	179.9°	179.7°
C5	C	N1	C8	179.8°	179.7°
C5	C	N2	C2	1.6°	0.3°
C5	C	N2	C7	179.8°	179.8°
C	C5	C4	C3	1.1°	0.1°
C	C5	C4	H5	180.0°	180.0°
C	C5	C4	H4	178.9°	179.7°
N1	C8	C7	N2	0.4°	0.0°
N1	C8	C7	H8	180.0°	180.0°
N1	C8	C7	C17	179.9°	180.0°
N2	C2	C3	H2	180.0°	180.0°
N2	C2	C3	C4	0.8°	0.3°
C2	N2	C7	C8	178.8°	180.0°
C2	N2	C7	C17	0.7°	0.0°
N2	C2	C3	H3	179.2°	180.0°
C3	C2	N2	C7	179.8°	179.9°
C2	C3	C4	H3	180.0°	179.7°
C2	C3	C4	C5	0.7°	0.2°
C2	C3	C4	H4	179.3°	180.0°
N2	C7	C8	C17	179.5°	180.0°
N2	C7	C17	C18	139.8°	95.0°
C7	N2	C2	H2	0.2°	0.0°
N2	C7	C8	H8	179.6°	180.0°
N2	C7	C17	H17	100.5°	25.0°
N2	C7	C17	H17A	20.2°	145.1°
O2	C18	O3	C17	178.2°	180.0°
O2	C18	C17	C7	173.8°	0.0°
O2	C18	C17	H17	66.5°	120.0°
O2	C18	C17	H17A	54.2°	120.0°
O2	C18	O3	HO3	0.0°	0.1°
C3	C4	C5	H4	180.0°	179.8°
C4	C3	C2	H2	179.2°	179.8°
C3	C4	C5	H5	178.9°	179.9°
O3	C18	C17	C7	4.5°	180.0°
O3	C18	C17	H17	115.2°	59.9°
O3	C18	C17	H17A	124.1°	60.0°
C5	C4	C3	H3	179.3°	179.9°
C8	C7	C17	C18	39.6°	85.0°
C8	C7	C17	H17	80.1°	155.0°
C8	C7	C17	H17A	159.2°	35.0°
C7	C17	C18	H17	119.7°	120.0°
C7	C17	C18	H17A	119.6°	120.0°
C17	C7	C8	H8	0.1°	0.0°
C7	C17	H17	H17A	121.1°	120.1°
C18	C17	H17	H17A	121.0°	119.9°
C17	C18	O3	HO3	178.2°	180.0°
H2	C2	C3	H3	0.9°	0.0°
H3	C3	C4	H4	0.7°	0.3°
H4	C4	C5	H5	1.1°	0.3°

222624

PDB entries from 2024-07-17

PDB statistics

PDBj update info

Contact PDBj

numon