IC
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | OP3 | sing | 1.61Å | 1.62Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.41Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C1' | C2' | sing | 1.54Å | 1.52Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| C1' | N1 | sing | 1.46Å | 1.49Å | |
| C1' | H1' | sing | 1.09Å | 1.09Å | |
| C2' | C3' | sing | 1.55Å | 1.53Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | H2' | sing | 1.09Å | 1.09Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.09Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C4' | H4' | sing | 1.09Å | 1.09Å | |
| C5' | H5' | sing | 1.09Å | 1.09Å | |
| C5' | H5'' | sing | 1.09Å | 1.09Å | |
| O2' | HO2' | sing | 0.97Å | 0.96Å | |
| N2 | C2 | sing | 1.37Å | 1.34Å | |
| N2 | H21 | sing | 0.97Å | 1.01Å | |
| N2 | H22 | sing | 0.97Å | 1.02Å | |
| C4 | N3 | sing | 1.34Å | 1.36Å | |
| C4 | O4 | doub | 1.22Å | 1.22Å | |
| C4 | C5 | sing | 1.42Å | 1.45Å | |
| N3 | C2 | doub | 1.32Å | 1.34Å | |
| C2 | N1 | sing | 1.36Å | 1.40Å | |
| N1 | C6 | sing | 1.36Å | 1.37Å | |
| C6 | C5 | doub | 1.35Å | 1.35Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 120.0° | 109.5° |
| OP1 | P | OP3 | 107.7° | 109.5° |
| OP1 | P | O5' | 108.3° | 109.4° |
| OP2 | P | OP3 | 108.0° | 109.4° |
| OP2 | P | O5' | 107.8° | 109.5° |
| P | OP2 | HOP2 | 119.9° | 106.8° |
| OP3 | P | O5' | 104.0° | 109.5° |
| P | OP3 | HOP3 | 107.7° | 106.8° |
| P | O5' | C5' | 122.1° | 106.8° |
| O5' | C5' | C4' | 110.8° | 109.5° |
| O5' | C5' | H5' | 109.5° | 109.5° |
| O5' | C5' | H5'' | 109.7° | 109.5° |
| C3' | O3' | HO3' | 110.8° | 106.8° |
| O3' | C3' | C2' | 110.9° | 110.5° |
| O3' | C3' | C4' | 113.7° | 110.5° |
| O3' | C3' | H3' | 111.8° | 110.4° |
| C2' | C1' | O4' | 106.6° | 104.9° |
| C2' | C1' | N1 | 110.2° | 110.4° |
| C2' | C1' | H1' | 109.1° | 110.4° |
| C1' | C2' | C3' | 102.9° | 104.0° |
| C1' | C2' | O2' | 108.0° | 110.8° |
| C1' | C2' | H2' | 112.3° | 110.4° |
| O4' | C1' | N1 | 114.0° | 110.4° |
| O4' | C1' | H1' | 108.0° | 110.4° |
| C1' | O4' | C4' | 109.6° | 105.2° |
| N1 | C1' | H1' | 108.7° | 110.3° |
| C1' | N1 | C2 | 120.1° | 119.9° |
| C1' | N1 | C6 | 122.1° | 119.8° |
| C3' | C2' | O2' | 112.0° | 110.5° |
| C3' | C2' | H2' | 111.1° | 110.5° |
| C2' | C3' | C4' | 100.0° | 104.1° |
| C2' | C3' | H3' | 110.3° | 110.6° |
| O2' | C2' | H2' | 110.3° | 110.5° |
| C2' | O2' | HO2' | 106.7° | 106.8° |
| C4' | C3' | H3' | 109.6° | 110.5° |
| C3' | C4' | C5' | 114.3° | 110.6° |
| C3' | C4' | O4' | 106.1° | 104.8° |
| C3' | C4' | H4' | 107.9° | 110.3° |
| C5' | C4' | O4' | 111.5° | 110.4° |
| C5' | C4' | H4' | 108.5° | 110.3° |
| C4' | C5' | H5' | 108.8° | 109.5° |
| C4' | C5' | H5'' | 109.4° | 109.5° |
| O4' | C4' | H4' | 108.3° | 110.3° |
| H5' | C5' | H5'' | 108.7° | 109.4° |
| C2 | N2 | H21 | 121.1° | 120.0° |
| C2 | N2 | H22 | 118.8° | 120.0° |
| N2 | C2 | N3 | 115.8° | 119.4° |
| N2 | C2 | N1 | 122.3° | 119.4° |
| H21 | N2 | H22 | 119.9° | 120.0° |
| N3 | C4 | O4 | 120.5° | 120.2° |
| N3 | C4 | C5 | 114.7° | 119.6° |
| C4 | N3 | C2 | 123.0° | 120.6° |
| O4 | C4 | C5 | 124.7° | 120.2° |
| C4 | C5 | C6 | 122.3° | 118.9° |
| C4 | C5 | H5 | 118.1° | 120.6° |
| N3 | C2 | N1 | 121.9° | 121.2° |
| C2 | N1 | C6 | 117.8° | 120.4° |
| N1 | C6 | C5 | 120.1° | 119.3° |
| N1 | C6 | H6 | 120.7° | 120.4° |
| C5 | C6 | H6 | 119.3° | 120.3° |
| C6 | C5 | H5 | 119.6° | 120.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 123.8° | 120.0° |
| OP1 | P | OP2 | O5' | 124.4° | 120.0° |
| OP1 | P | OP3 | O5' | 114.7° | 120.0° |
| OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 179.9° | 180.0° |
| OP1 | P | O5' | C5' | 34.4° | 60.0° |
| OP2 | P | OP3 | O5' | 114.3° | 120.0° |
| OP2 | P | OP3 | HOP3 | 49.1° | 60.0° |
| OP2 | P | O5' | C5' | 165.6° | 180.0° |
| OP3 | P | OP2 | HOP2 | 56.2° | 60.1° |
| OP3 | P | O5' | C5' | 79.9° | 60.0° |
| O5' | P | OP2 | HOP2 | 55.6° | 179.9° |
| O5' | P | OP3 | HOP3 | 65.2° | 60.0° |
| P | O5' | C5' | C4' | 171.6° | 180.0° |
| P | O5' | C5' | H5' | 51.7° | 60.0° |
| P | O5' | C5' | H5'' | 67.5° | 60.0° |
| O5' | C5' | C4' | C3' | 68.5° | 176.9° |
| O5' | C5' | C4' | H5' | 120.4° | 120.0° |
| O5' | C5' | C4' | H5'' | 121.0° | 120.1° |
| O5' | C5' | C4' | O4' | 51.9° | 61.4° |
| O5' | C5' | C4' | H4' | 171.1° | 60.8° |
| O5' | C5' | H5' | H5'' | 119.7° | 120.0° |
| O3' | C3' | C2' | C1' | 156.5° | 118.9° |
| O3' | C3' | C2' | C4' | 120.3° | 118.7° |
| O3' | C3' | C2' | H3' | 124.3° | 122.6° |
| O3' | C3' | C2' | O2' | 40.7° | 0.1° |
| O3' | C3' | C2' | H2' | 83.1° | 122.6° |
| O3' | C3' | C4' | H3' | 125.9° | 122.5° |
| O3' | C3' | C4' | C5' | 82.7° | 98.3° |
| O3' | C3' | C4' | O4' | 154.0° | 142.8° |
| O3' | C3' | C4' | H4' | 38.1° | 24.0° |
| HO3' | O3' | C3' | C2' | 180.0° | 65.3° |
| HO3' | O3' | C3' | C4' | 68.2° | 179.9° |
| HO3' | O3' | C3' | H3' | 56.6° | 57.4° |
| C2' | C1' | O4' | N1 | 121.8° | 118.9° |
| C2' | C1' | O4' | H1' | 117.2° | 118.9° |
| C2' | C1' | N1 | H1' | 119.6° | 122.2° |
| C1' | C2' | C3' | O2' | 115.8° | 119.0° |
| C1' | C2' | C3' | H2' | 120.4° | 118.5° |
| C1' | C2' | O2' | H2' | 123.1° | 122.7° |
| C1' | C2' | C3' | C4' | 36.2° | 0.2° |
| C1' | C2' | C3' | H3' | 79.2° | 118.5° |
| C2' | C1' | O4' | C4' | 2.9° | 40.4° |
| C1' | C2' | O2' | HO2' | 150.1° | 176.2° |
| C2' | C1' | N1 | C2 | 79.4° | 90.4° |
| C2' | C1' | N1 | C6 | 99.7° | 89.1° |
| O4' | C1' | N1 | H1' | 120.6° | 122.2° |
| O4' | C1' | C2' | C3' | 25.5° | 23.8° |
| O4' | C1' | C2' | O2' | 93.0° | 142.6° |
| O4' | C1' | C2' | H2' | 145.1° | 94.7° |
| C1' | O4' | C4' | C3' | 21.2° | 40.5° |
| C1' | O4' | C4' | C5' | 146.3° | 159.5° |
| C1' | O4' | C4' | H4' | 94.4° | 78.3° |
| O4' | C1' | N1 | C2 | 160.8° | 154.0° |
| O4' | C1' | N1 | C6 | 20.2° | 26.4° |
| N1 | C1' | C2' | C3' | 98.7° | 142.8° |
| N1 | C1' | C2' | O2' | 142.7° | 98.5° |
| N1 | C1' | C2' | H2' | 20.8° | 24.2° |
| N1 | C1' | O4' | C4' | 119.0° | 159.3° |
| C1' | N1 | C2 | N2 | 5.4° | 0.2° |
| C1' | N1 | C2 | N3 | 176.1° | 180.0° |
| C1' | N1 | C2 | C6 | 179.1° | 179.6° |
| C1' | N1 | C6 | C5 | 176.6° | 180.0° |
| C1' | N1 | C6 | H6 | 3.1° | 0.2° |
| H1' | C1' | C2' | C3' | 142.0° | 95.1° |
| H1' | C1' | C2' | O2' | 23.4° | 23.7° |
| H1' | C1' | C2' | H2' | 98.5° | 146.4° |
| H1' | C1' | O4' | C4' | 120.1° | 78.5° |
| H1' | C1' | N1 | C2 | 40.2° | 31.8° |
| H1' | C1' | N1 | C6 | 140.8° | 148.6° |
| C3' | C2' | O2' | H2' | 124.2° | 122.5° |
| C2' | C3' | C4' | H3' | 115.9° | 118.8° |
| C2' | C3' | C4' | C5' | 159.1° | 143.0° |
| C2' | C3' | C4' | O4' | 35.8° | 24.1° |
| C2' | C3' | C4' | H4' | 80.1° | 94.7° |
| C3' | C2' | O2' | HO2' | 37.5° | 61.4° |
| O2' | C2' | C3' | C4' | 79.5° | 118.8° |
| O2' | C2' | C3' | H3' | 165.0° | 122.5° |
| H2' | C2' | C3' | C4' | 156.6° | 118.6° |
| H2' | C2' | C3' | H3' | 41.2° | 0.0° |
| H2' | C2' | O2' | HO2' | 86.8° | 61.1° |
| C3' | C4' | C5' | O4' | 120.4° | 115.5° |
| C3' | C4' | C5' | H4' | 120.4° | 122.3° |
| C3' | C4' | O4' | H4' | 115.6° | 118.8° |
| C3' | C4' | C5' | H5' | 171.2° | 63.1° |
| C3' | C4' | C5' | H5'' | 52.6° | 56.8° |
| H3' | C3' | C4' | C5' | 43.3° | 24.2° |
| H3' | C3' | C4' | O4' | 80.1° | 94.7° |
| H3' | C3' | C4' | H4' | 164.1° | 146.5° |
| C5' | C4' | O4' | H4' | 119.3° | 122.2° |
| C4' | C5' | H5' | H5'' | 119.1° | 119.9° |
| O4' | C4' | C5' | H5' | 68.5° | 178.5° |
| O4' | C4' | C5' | H5'' | 172.9° | 58.6° |
| H4' | C4' | C5' | H5' | 50.7° | 59.3° |
| H4' | C4' | C5' | H5'' | 67.9° | 179.2° |
| C2 | N2 | H21 | H22 | 175.8° | 179.7° |
| N2 | C2 | N3 | C4 | 176.8° | 179.9° |
| N2 | C2 | N3 | N1 | 178.6° | 179.8° |
| N2 | C2 | N1 | C6 | 173.7° | 179.8° |
| H21 | N2 | C2 | N3 | 175.9° | 11.9° |
| H21 | N2 | C2 | N1 | 2.7° | 167.9° |
| H22 | N2 | C2 | N3 | 0.1° | 167.8° |
| H22 | N2 | C2 | N1 | 178.5° | 12.4° |
| N3 | C4 | O4 | C5 | 179.9° | 179.9° |
| C4 | N3 | C2 | N1 | 1.8° | 0.2° |
| N3 | C4 | C5 | C6 | 2.0° | 0.1° |
| N3 | C4 | C5 | H5 | 177.9° | 180.0° |
| O4 | C4 | N3 | C2 | 178.4° | 180.0° |
| O4 | C4 | C5 | C6 | 177.9° | 180.0° |
| O4 | C4 | C5 | H5 | 2.1° | 0.1° |
| C5 | C4 | N3 | C2 | 1.6° | 0.1° |
| C4 | C5 | C6 | N1 | 1.0° | 0.2° |
| C4 | C5 | C6 | H5 | 179.9° | 179.9° |
| C4 | C5 | C6 | H6 | 179.3° | 180.0° |
| N3 | C2 | N1 | C6 | 4.8° | 0.4° |
| C2 | N1 | C6 | C5 | 4.3° | 0.5° |
| C2 | N1 | C6 | H6 | 176.0° | 179.7° |
| N1 | C6 | C5 | H6 | 179.7° | 179.8° |
| N1 | C6 | C5 | H5 | 179.1° | 179.7° |
| H6 | C6 | C5 | H5 | 0.6° | 0.1° |
