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IB2

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PAO1Adoub1.48Å1.53Å
PAO2Asing1.61Å1.54Å
PAC3Asing1.82Å1.86Å
PAO5Dsing1.61Å1.63Å
O2AHOA2sing0.97Å0.95Å
C3APBsing1.82Å1.84Å
C3AH3A1sing1.09Å1.11Å
C3AH3A2sing1.09Å1.11Å
PBO1Bdoub1.48Å1.51Å
PBO2Bsing1.61Å1.50Å
PBO3Bsing1.61Å1.54Å
O2BHOB2sing0.97Å0.95Å
O3BPGsing1.61Å1.56Å
PGO1Gdoub1.48Å1.42Å
PGS2Gsing2.12Å1.44Å
PGO5'sing1.61Å1.60Å
S2GHSG2sing1.34Å0.95Å
O5DC5Dsing1.43Å1.41Å
C5DC4Dsing1.53Å1.50Å
C5DH5'1sing1.09Å1.12Å
C5DH5'2sing1.09Å1.12Å
C4DO4Dsing1.44Å1.44Å
C4DC3Dsing1.54Å1.54Å
C4DH4Dsing1.09Å1.11Å
O4DC1Dsing1.44Å1.48Å
C3DO3Dsing1.43Å1.44Å
C3DC2Dsing1.55Å1.54Å
C3DH3Dsing1.09Å1.12Å
O3DHO3'sing0.97Å0.95Å
C2DO2Dsing1.43Å1.50Å
C2DC1Dsing1.54Å1.55Å
C2DH2Dsing1.09Å1.12Å
O2DHO2'sing0.97Å0.95Å
C1DN9Asing1.46Å1.50Å
C1DH1Dsing1.09Å1.11Å
O5'C5'sing1.43Å1.45Å
C5'C4'sing1.53Å1.54Å
C5'H51Xsing1.09Å1.11Å
C5'H52Xsing1.09Å1.12Å
C4'O4'sing1.44Å1.46Å
C4'C3'sing1.54Å1.55Å
C4'H4'sing1.09Å1.12Å
O4'C1'sing1.44Å1.46Å
C3'O3'sing1.43Å1.44Å
C3'C2'sing1.55Å1.50Å
C3'H3'sing1.09Å1.12Å
O3'HO3Xsing0.97Å0.95Å
C2'O2'sing1.43Å1.45Å
C2'C1'sing1.55Å1.53Å
C2'H2'sing1.09Å1.12Å
O2'HO2Xsing0.97Å0.95Å
C1'N9sing1.46Å1.51Å
C1'H1'sing1.09Å1.11Å
N9C8sing1.36Å1.36ÅAromatic
N9C4sing1.37Å1.29ÅAromatic
C8N7doub1.30Å1.35ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.35Å1.33ÅAromatic
C5C6sing1.40Å1.39ÅAromatic
C5C4doub1.41Å1.42ÅAromatic
C6N6sing1.38Å1.35Å
C6N1doub1.33Å1.44ÅAromatic
N6HN61sing0.97Å1.02Å
N6HN62sing0.97Å1.02Å
N1C2sing1.32Å1.40ÅAromatic
C2N3doub1.32Å1.35ÅAromatic
C2H2sing1.08Å1.10Å
N3C4sing1.33Å1.44ÅAromatic
N9AC8Asing1.36Å1.36ÅAromatic
N9AC4Asing1.37Å1.27ÅAromatic
C8AN7Adoub1.30Å1.34ÅAromatic
C8AH8Asing1.08Å1.10Å
N7AC5Asing1.35Å1.34ÅAromatic
C5AC6Asing1.41Å1.41ÅAromatic
C5AC4Adoub1.41Å1.42ÅAromatic
C6AN6Asing1.38Å1.33Å
C6AN1Adoub1.33Å1.42ÅAromatic
N6AHNA1sing0.97Å1.02Å
N6AHNA2sing0.97Å1.02Å
N1AC2Asing1.32Å1.42ÅAromatic
C2AN3Adoub1.32Å1.37ÅAromatic
C2AH2Asing1.08Å1.10Å
N3AC4Asing1.33Å1.42ÅAromatic
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1APAO2A115.6°109.4°
O1APAC3A106.0°109.5°
O1APAO5D109.1°109.5°
O2APAC3A105.9°109.5°
O2APAO5D110.0°109.4°
PAO2AHOA2115.6°106.8°
C3APAO5D110.1°109.5°
PAC3APB120.7°109.4°
PAC3AH3A1108.2°109.5°
PAC3AH3A2108.2°109.4°
PAO5DC5D118.6°106.8°
PBC3AH3A1108.2°109.5°
PBC3AH3A2108.2°109.4°
C3APBO1B104.7°109.5°
C3APBO2B107.8°109.5°
C3APBO3B109.8°109.5°
H3A1C3AH3A2101.8°109.5°
O1BPBO2B115.4°109.5°
O1BPBO3B110.6°109.5°
O2BPBO3B108.3°109.4°
PBO2BHOB2107.8°106.8°
PBO3BPG138.4°106.8°
O3BPGO1G115.0°109.5°
O3BPGS2G109.5°109.5°
O3BPGO5'100.8°109.5°
O1GPGS2G109.4°109.5°
O1GPGO5'111.9°109.5°
S2GPGO5'110.0°109.5°
PGS2GHSG2109.5°100.0°
PGO5'C5'120.0°106.9°
O5DC5DC4D104.3°109.5°
O5DC5DH5'1114.2°109.4°
O5DC5DH5'2114.2°109.5°
C4DC5DH5'1114.2°109.5°
C4DC5DH5'2114.2°109.5°
C5DC4DO4D107.2°110.4°
C5DC4DC3D112.5°110.5°
C5DC4DH4D108.3°110.3°
H5'1C5DH5'296.3°109.5°
O4DC4DC3D107.3°104.8°
O4DC4DH4D113.4°110.4°
C4DO4DC1D109.2°105.3°
C3DC4DH4D108.1°110.4°
C4DC3DO3D110.7°110.5°
C4DC3DC2D106.7°104.1°
C4DC3DH3D111.1°110.5°
O4DC1DC2D107.9°104.9°
O4DC1DN9A111.9°110.4°
O4DC1DH1D109.3°110.4°
O3DC3DC2D111.1°110.5°
O3DC3DH3D106.6°110.4°
C3DO3DHO3'110.7°106.8°
C2DC3DH3D110.7°110.6°
C3DC2DO2D113.4°110.5°
C3DC2DC1D101.0°103.9°
C3DC2DH2D115.1°110.5°
O2DC2DC1D116.2°110.8°
O2DC2DH2D99.6°110.5°
C2DO2DHO2'113.4°106.8°
C1DC2DH2D112.3°110.4°
C2DC1DN9A110.6°110.4°
C2DC1DH1D110.6°110.3°
N9AC1DH1D106.5°110.3°
C1DN9AC8A125.8°126.2°
C1DN9AC4A126.6°126.3°
O5'C5'C4'107.3°109.5°
O5'C5'H51X113.0°109.4°
O5'C5'H52X113.0°109.5°
C4'C5'H51X113.1°109.5°
C4'C5'H52X113.1°109.5°
C5'C4'O4'108.9°109.9°
C5'C4'C3'111.0°109.9°
C5'C4'H4'108.2°109.9°
H51XC5'H52X97.4°109.4°
O4'C4'C3'107.7°107.4°
O4'C4'H4'111.6°109.9°
C4'O4'C1'107.5°107.0°
C3'C4'H4'109.4°109.8°
C4'C3'O3'113.6°110.7°
C4'C3'C2'105.0°104.0°
C4'C3'H3'110.6°110.4°
O4'C1'C2'108.8°103.5°
O4'C1'N9110.7°110.7°
O4'C1'H1'109.6°110.6°
O3'C3'C2'112.0°110.5°
O3'C3'H3'103.5°110.4°
C3'O3'HO3X113.6°106.8°
C2'C3'H3'112.3°110.6°
C3'C2'O2'114.0°110.9°
C3'C2'C1'102.9°102.1°
C3'C2'H2'112.7°111.0°
O2'C2'C1'114.1°110.9°
O2'C2'H2'101.1°110.8°
C2'O2'HO2X114.0°106.8°
C1'C2'H2'112.6°110.9°
C2'C1'N9110.9°110.7°
C2'C1'H1'109.4°110.6°
N9C1'H1'107.4°110.5°
C1'N9C8126.2°126.3°
C1'N9C4127.4°126.3°
C8N9C4106.4°107.4°
N9C8N7110.9°110.0°
N9C8H8125.0°125.0°
N9C4C5109.3°106.0°
N9C4N3131.5°134.9°
N7C8H8124.2°125.1°
C8N7C5107.0°109.5°
N7C5C6133.7°134.7°
N7C5C4106.4°107.1°
C6C5C4119.9°118.2°
C5C6N6121.5°120.8°
C5C6N1117.6°118.4°
C5C4N3119.2°119.1°
N6C6N1120.9°120.8°
C6N6HN61121.5°120.0°
C6N6HN62107.9°120.0°
C6N1C2123.1°121.2°
HN61N6HN62107.9°120.1°
N1C2N3117.8°122.5°
N1C2H2123.0°118.7°
N3C2H2119.2°118.8°
C2N3C4122.4°120.6°
C8AN9AC4A107.5°107.4°
N9AC8AN7A109.9°110.0°
N9AC8AH8A125.5°125.0°
N9AC4AC5A109.7°106.0°
N9AC4AN3A130.8°135.0°
N7AC8AH8A124.5°125.0°
C8AN7AC5A107.3°109.5°
N7AC5AC6A134.0°134.7°
N7AC5AC4A105.5°107.1°
C6AC5AC4A120.5°118.2°
C5AC6AN6A122.0°120.8°
C5AC6AN1A118.0°118.4°
C5AC4AN3A119.5°119.0°
N6AC6AN1A120.1°120.8°
C6AN6AHNA1122.0°120.0°
C6AN6AHNA2107.8°120.0°
C6AN1AC2A122.0°121.2°
HNA1N6AHNA2107.7°120.1°
N1AC2AN3A118.8°122.4°
N1AC2AH2A122.0°118.8°
N3AC2AH2A119.2°118.8°
C2AN3AC4A121.3°120.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1APAO2AC3A117.0°120.0°
O1APAO2AO5D124.1°119.9°
O1APAC3AO5D117.9°120.0°
O1APAO2AHOA2180.0°180.0°
O1APAC3APB45.4°60.0°
O1APAC3AH3A1170.7°180.0°
O1APAC3AH3A279.8°60.0°
O1APAO5DC5D71.7°60.0°
O2APAC3AO5D118.8°120.0°
O2APAC3APB77.8°60.0°
O2APAC3AH3A147.4°60.0°
O2APAC3AH3A2156.9°180.0°
O2APAO5DC5D56.1°60.0°
C3APAO2AHOA262.9°60.0°
PAC3APBH3A1125.2°120.0°
PAC3APBH3A2125.3°119.9°
PAC3AH3A1H3A2113.8°120.0°
PAC3APBO1B147.9°60.0°
PAC3APBO2B24.4°60.0°
PAC3APBO3B93.4°180.0°
C3APAO5DC5D172.4°180.0°
O5DPAO2AHOA256.0°60.0°
O5DPAC3APB163.3°180.0°
O5DPAC3AH3A171.5°60.0°
O5DPAC3AH3A238.0°60.1°
PAO5DC5DC4D145.9°180.0°
PAO5DC5DH5'188.8°60.0°
PAO5DC5DH5'220.6°60.0°
PBC3AH3A1H3A2113.8°120.0°
C3APBO1BO2B118.4°120.1°
C3APBO1BO3B118.2°120.0°
C3APBO2BO3B118.7°120.0°
C3APBO2BHOB2180.0°60.0°
C3APBO3BPG173.7°180.0°
H3A1C3APBO1B22.6°60.0°
H3A1C3APBO2B100.8°180.0°
H3A1C3APBO3B141.4°60.0°
H3A2C3APBO1B86.9°180.0°
H3A2C3APBO2B149.7°59.9°
H3A2C3APBO3B31.9°60.0°
O1BPBO2BO3B124.6°120.0°
O1BPBO2BHOB263.3°180.0°
O1BPBO3BPG71.2°60.0°
O2BPBO3BPG56.3°60.0°
O3BPBO2BHOB261.3°60.0°
PBO3BPGO1G7.1°60.0°
PBO3BPGS2G116.5°60.0°
PBO3BPGO5'127.6°180.0°
O3BPGO1GS2G123.6°120.0°
O3BPGO1GO5'114.2°120.0°
O3BPGS2GO5'109.9°120.0°
O3BPGS2GHSG2179.9°60.0°
O3BPGO5'C5'80.3°180.0°
O1GPGS2GO5'123.3°120.0°
O1GPGS2GHSG253.1°180.0°
O1GPGO5'C5'42.4°60.0°
S2GPGO5'C5'164.2°60.0°
O5'PGS2GHSG270.2°60.0°
PGO5'C5'C4'122.0°180.0°
PGO5'C5'H51X112.7°60.0°
PGO5'C5'H52X3.3°60.0°
O5DC5DC4DH5'1125.3°119.9°
O5DC5DC4DH5'2125.3°120.0°
O5DC5DH5'1H5'2120.0°120.0°
O5DC5DC4DO4D116.1°61.5°
O5DC5DC4DC3D126.1°176.9°
O5DC5DC4DH4D6.6°60.8°
C4DC5DH5'1H5'2120.1°120.0°
C5DC4DO4DC3D121.2°118.9°
C5DC4DO4DH4D119.4°122.3°
C5DC4DC3DH4D119.5°122.3°
C5DC4DO4DC1D121.1°159.4°
C5DC4DC3DO3D138.7°98.4°
C5DC4DC3DC2D100.2°142.9°
C5DC4DC3DH3D20.5°24.2°
H5'1C5DC4DO4D9.1°178.6°
H5'1C5DC4DC3D108.7°63.2°
H5'1C5DC4DH4D131.9°59.1°
H5'2C5DC4DO4D118.6°58.5°
H5'2C5DC4DC3D0.8°56.9°
H5'2C5DC4DH4D118.7°179.2°
O4DC4DC3DH4D122.7°118.8°
O4DC4DC3DO3D103.5°142.8°
O4DC4DC3DC2D17.5°24.1°
O4DC4DC3DH3D138.2°94.7°
C4DO4DC1DC2D17.5°40.5°
C4DO4DC1DN9A139.3°159.4°
C4DO4DC1DH1D102.9°78.4°
C3DC4DO4DC1D0.0°40.5°
C4DC3DO3DC2D118.4°114.7°
C4DC3DO3DH3D120.9°122.6°
C4DC3DC2DH3D120.9°118.7°
C4DC3DO3DHO3'180.0°179.9°
C4DC3DC2DO2D151.5°118.8°
C4DC3DC2DC1D26.4°0.2°
C4DC3DC2DH2D94.7°118.6°
H4DC4DO4DC1D119.4°78.3°
H4DC4DC3DO3D19.2°23.9°
H4DC4DC3DC2D140.2°94.7°
H4DC4DC3DH3D99.1°146.5°
O4DC1DC2DC3D26.9°23.8°
O4DC1DC2DO2D150.0°142.6°
O4DC1DC2DN9A122.6°118.9°
O4DC1DC2DH1D119.6°118.9°
O4DC1DC2DH2D96.3°94.7°
O4DC1DN9AH1D119.4°122.3°
O4DC1DN9AC8A177.7°27.0°
O4DC1DN9AC4A2.6°153.0°
O3DC3DC2DH3D118.3°122.6°
O3DC3DC2DO2D30.7°0.1°
O3DC3DC2DC1D94.4°118.9°
O3DC3DC2DH2D144.5°122.7°
C2DC3DO3DHO3'61.6°65.3°
C3DC2DO2DC1D116.4°114.7°
C3DC2DO2DH2D122.8°122.7°
C3DC2DC1DH2D123.2°118.5°
C3DC2DO2DHO2'179.9°61.5°
C3DC2DC1DN9A149.5°142.8°
C3DC2DC1DH1D92.7°95.1°
H3DC3DO3DHO3'59.0°57.4°
H3DC3DC2DO2D87.6°122.5°
H3DC3DC2DC1D147.4°118.5°
H3DC3DC2DH2D26.2°0.1°
O2DC2DC1DH2D113.7°122.7°
O2DC2DC1DN9A87.3°98.5°
O2DC2DC1DH1D30.5°23.7°
C1DC2DO2DHO2'63.7°176.2°
C2DC1DN9AH1D120.3°122.2°
C2DC1DN9AC8A62.0°88.5°
C2DC1DN9AC4A117.6°91.5°
H2DC2DO2DHO2'57.1°61.2°
H2DC2DC1DN9A26.4°24.2°
H2DC2DC1DH1D144.1°146.4°
C1DN9AC8AC4A179.7°180.0°
C1DN9AC8AN7A179.6°180.0°
C1DN9AC8AH8A0.4°0.1°
C1DN9AC4AC5A179.4°179.7°
C1DN9AC4AN3A0.2°0.0°
H1DC1DN9AC8A58.3°149.3°
H1DC1DN9AC4A122.1°30.7°
O5'C5'C4'H51X125.3°120.0°
O5'C5'C4'H52X125.3°120.0°
O5'C5'H51XH52X118.9°119.9°
O5'C5'C4'O4'124.9°61.7°
O5'C5'C4'C3'116.7°179.7°
O5'C5'C4'H4'3.4°59.3°
C4'C5'H51XH52X119.0°120.0°
C5'C4'O4'C3'120.5°119.5°
C5'C4'O4'H4'119.4°121.0°
C5'C4'C3'H4'119.4°121.0°
C5'C4'O4'C1'119.7°146.0°
C5'C4'C3'O3'136.1°119.9°
C5'C4'C3'C2'101.1°121.4°
C5'C4'C3'H3'20.3°2.8°
H51XC5'C4'O4'0.4°58.3°
H51XC5'C4'C3'118.0°59.7°
H51XC5'C4'H4'121.9°179.3°
H52XC5'C4'O4'109.9°178.3°
H52XC5'C4'C3'8.6°60.3°
H52XC5'C4'H4'128.7°60.7°
O4'C4'C3'H4'121.4°119.5°
O4'C4'C3'O3'104.7°120.6°
O4'C4'C3'C2'18.0°1.9°
O4'C4'C3'H3'139.4°116.7°
C4'O4'C1'C2'16.8°40.0°
C4'O4'C1'N9139.0°158.7°
C4'O4'C1'H1'102.7°78.4°
C3'C4'O4'C1'0.8°26.4°
C4'C3'O3'C2'118.8°114.7°
C4'C3'O3'H3'120.0°122.6°
C4'C3'C2'H3'120.3°118.6°
C4'C3'O3'HO3X179.9°176.2°
C4'C3'C2'O2'150.9°139.2°
C4'C3'C2'C1'26.8°21.0°
C4'C3'C2'H2'94.7°97.2°
H4'C4'O4'C1'120.9°93.0°
H4'C4'C3'O3'16.7°1.1°
H4'C4'C3'C2'139.5°117.6°
H4'C4'C3'H3'99.1°123.8°
O4'C1'C2'C3'27.7°37.1°
O4'C1'C2'O2'151.6°155.3°
O4'C1'C2'N9122.0°118.6°
O4'C1'C2'H1'119.7°118.5°
O4'C1'C2'H2'93.9°81.2°
O4'C1'N9H1'119.6°122.9°
O4'C1'N9C853.8°28.5°
O4'C1'N9C4126.3°151.7°
O3'C3'C2'H3'115.9°122.6°
O3'C3'C2'O2'27.1°20.3°
O3'C3'C2'C1'97.0°97.9°
O3'C3'C2'H2'141.5°143.9°
C2'C3'O3'HO3X61.2°61.5°
C3'C2'O2'C1'117.7°112.7°
C3'C2'O2'H2'121.1°123.7°
C3'C2'C1'H2'121.6°118.3°
C3'C2'O2'HO2X179.9°67.3°
C3'C2'C1'N9149.6°155.7°
C3'C2'C1'H1'92.0°81.4°
H3'C3'O3'HO3X59.9°61.1°
H3'C3'C2'O2'88.8°102.3°
H3'C3'C2'C1'147.1°139.6°
H3'C3'C2'H2'25.6°21.3°
O2'C2'C1'H2'114.5°123.5°
O2'C2'C1'N986.4°86.1°
O2'C2'C1'H1'31.9°36.8°
C1'C2'O2'HO2X62.3°180.0°
C2'C1'N9H1'119.5°122.9°
C2'C1'N9C867.1°85.6°
C2'C1'N9C4112.9°94.1°
H2'C2'O2'HO2X58.8°56.4°
H2'C2'C1'N928.1°37.4°
H2'C2'C1'H1'146.4°160.3°
C1'N9C8C4180.0°179.8°
C1'N9C8N7179.6°180.0°
C1'N9C8H80.5°0.0°
C1'N9C4C5179.6°179.8°
C1'N9C4N30.3°0.7°
H1'C1'N9C8173.4°151.5°
H1'C1'N9C46.6°28.8°
N9C8N7H8179.9°180.0°
N9C8N7C50.3°0.0°
C8N9C4C50.4°0.4°
C8N9C4N3179.7°179.5°
C4N9C8N70.5°0.3°
C4N9C8H8179.5°179.8°
N9C4C5N70.2°0.4°
N9C4C5C6179.5°179.8°
N9C4C5N3179.9°179.3°
N9C4N3C2179.8°179.6°
C8N7C5C6179.8°179.9°
C8N7C5C40.1°0.2°
H8C8N7C5179.6°180.0°
N7C5C6C4179.7°179.7°
N7C5C6N60.4°0.0°
N7C5C6N1179.8°180.0°
N7C5C4N3179.8°179.6°
C5C6N6N1179.8°180.0°
C5C6N6HN61180.0°179.9°
C5C6N6HN6254.7°0.0°
C5C6N1C20.3°0.0°
C6C5C4N30.4°0.6°
C4C5C6N6179.3°179.7°
C4C5C6N10.5°0.3°
C5C4N3C20.1°0.6°
C6N6HN61HN62125.3°179.9°
N6C6N1C2179.5°179.9°
N1C6N6HN610.3°0.1°
N1C6N6HN62125.5°180.0°
C6N1C2N30.0°0.0°
C6N1C2H2179.9°180.0°
N1C2N3H2180.0°180.0°
N1C2N3C40.1°0.3°
H2C2N3C4179.8°179.7°
N9AC8AN7AH8A180.0°180.0°
N9AC8AN7AC5A0.0°0.2°
C8AN9AC4AC5A0.3°0.3°
C8AN9AC4AN3A180.0°180.0°
C4AN9AC8AN7A0.2°0.0°
C4AN9AC8AH8A179.9°179.9°
N9AC4AC5AN7A0.3°0.4°
N9AC4AC5AC6A179.7°179.7°
N9AC4AC5AN3A179.7°179.8°
N9AC4AN3AC2A179.9°180.0°
C8AN7AC5AC6A179.8°179.5°
C8AN7AC5AC4A0.2°0.4°
H8AC8AN7AC5A179.9°179.8°
N7AC5AC6AC4A180.0°179.0°
N7AC5AC6AN6A0.2°0.7°
N7AC5AC6AN1A179.9°179.5°
N7AC5AC4AN3A180.0°179.8°
C5AC6AN6AN1A179.9°179.8°
C5AC6AN6AHNA1180.0°179.7°
C5AC6AN6AHNA254.7°0.5°
C5AC6AN1AC2A0.0°0.2°
C6AC5AC4AN3A0.0°0.5°
C4AC5AC6AN6A179.7°179.7°
C4AC5AC6AN1A0.1°0.5°
C5AC4AN3AC2A0.2°0.3°
C6AN6AHNA1HNA2125.3°179.8°
N6AC6AN1AC2A179.9°180.0°
N1AC6AN6AHNA10.1°0.0°
N1AC6AN6AHNA2125.4°179.7°
C6AN1AC2AN3A0.2°0.0°
C6AN1AC2AH2A179.8°180.0°
N1AC2AN3AH2A180.0°180.0°
N1AC2AN3AC4A0.4°0.0°
H2AC2AN3AC4A179.7°180.0°

224572

PDB entries from 2024-09-04

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