English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

IA2

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
CL18	C10	sing	1.74Å	1.73Å
C10	C9	doub	1.35Å	1.41Å	Aromatic
C10	N1	sing	1.36Å	1.36Å	Aromatic
C9	CL17	sing	1.74Å	1.75Å
C9	C8	sing	1.41Å	1.43Å	Aromatic
C8	CL16	sing	1.74Å	1.75Å
C8	C7	doub	1.36Å	1.45Å	Aromatic
C7	C4	sing	1.48Å	1.54Å	Aromatic
C7	N1	sing	1.37Å	1.40Å	Aromatic
C4	C3	doub	1.40Å	1.49Å	Aromatic
C4	C5	sing	1.40Å	1.48Å	Aromatic
C3	C2	sing	1.39Å	1.47Å	Aromatic
C3	O12	sing	1.36Å	1.36Å
C2	CL14	sing	1.74Å	1.72Å
C2	C1	doub	1.38Å	1.44Å	Aromatic
C5	C6	doub	1.38Å	1.45Å	Aromatic
C6	CL13	sing	1.74Å	1.73Å
C6	C1	sing	1.39Å	1.44Å	Aromatic
N1	H1	sing	0.97Å	1.00Å
C5	H5	sing	1.08Å	1.08Å
O12	H12	sing	0.97Å	0.95Å
C1	HA	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CL18	C10	C9	129.4°	125.7°
CL18	C10	N1	124.0°	125.8°
C9	C10	N1	106.6°	108.5°
C10	C9	CL17	126.5°	126.1°
C10	C9	C8	107.7°	107.7°
C10	N1	C7	114.0°	108.6°
C10	N1	H1	123.0°	125.7°
CL17	C9	C8	125.8°	126.2°
C9	C8	CL16	122.6°	126.3°
C9	C8	C7	108.0°	107.4°
CL16	C8	C7	129.4°	126.3°
C8	C7	C4	136.7°	126.1°
C8	C7	N1	103.6°	107.8°
C4	C7	N1	119.6°	126.0°
C7	C4	C3	127.1°	120.1°
C7	C4	C5	114.9°	120.2°
C7	N1	H1	123.0°	125.7°
C3	C4	C5	118.0°	119.7°
C4	C3	C2	118.3°	119.8°
C4	C3	O12	122.5°	120.1°
C4	C5	C6	121.6°	119.9°
C4	C5	H5	119.2°	120.0°
C2	C3	O12	119.2°	120.1°
C3	C2	CL14	120.9°	119.9°
C3	C2	C1	121.9°	120.1°
C3	O12	H12	109.5°	113.9°
CL14	C2	C1	117.1°	120.0°
C2	C1	C6	120.2°	120.3°
C2	C1	HA	119.9°	119.8°
C5	C6	CL13	120.8°	119.9°
C5	C6	C1	119.9°	120.2°
C6	C5	H5	119.2°	120.0°
CL13	C6	C1	119.3°	119.9°
C6	C1	HA	119.9°	119.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CL18	C10	C9	N1	180.0°	179.8°
CL18	C10	C9	CL17	0.0°	0.1°
CL18	C10	C9	C8	179.9°	180.0°
CL18	C10	N1	C7	179.9°	179.8°
CL18	C10	N1	H1	0.1°	0.0°
C10	C9	CL17	C8	179.9°	179.9°
C10	C9	C8	CL16	179.9°	180.0°
C10	C9	C8	C7	0.0°	0.0°
C9	C10	N1	C7	0.1°	0.4°
C9	C10	N1	H1	179.9°	179.8°
N1	C10	C9	CL17	180.0°	179.7°
N1	C10	C9	C8	0.0°	0.2°
C10	N1	C7	C8	0.1°	0.5°
C10	N1	C7	C4	179.7°	179.8°
C10	N1	C7	H1	180.0°	179.8°
CL17	C9	C8	CL16	0.0°	0.0°
CL17	C9	C8	C7	179.9°	180.0°
C9	C8	CL16	C7	179.8°	180.0°
C9	C8	C7	C4	179.7°	180.0°
C9	C8	C7	N1	0.1°	0.3°
CL16	C8	C7	C4	0.2°	0.0°
CL16	C8	C7	N1	179.9°	179.7°
C8	C7	C4	N1	179.7°	179.7°
C8	C7	C4	C3	4.9°	65.0°
C8	C7	C4	C5	174.9°	114.7°
C8	C7	N1	H1	179.9°	179.8°
C7	C4	C3	C5	179.8°	179.7°
C7	C4	C3	C2	179.5°	180.0°
C7	C4	C3	O12	0.2°	0.1°
C7	C4	C5	C6	179.6°	180.0°
C4	C7	N1	H1	0.3°	0.0°
C7	C4	C5	H5	0.4°	0.0°
N1	C7	C4	C3	175.4°	114.7°
N1	C7	C4	C5	4.8°	65.6°
C4	C3	C2	O12	179.7°	179.9°
C4	C3	C2	CL14	179.7°	180.0°
C4	C3	C2	C1	0.3°	0.0°
C3	C4	C5	C6	0.2°	0.2°
C3	C4	C5	H5	179.8°	179.8°
C4	C3	O12	H12	9.7°	90.0°
C5	C4	C3	C2	0.3°	0.2°
C5	C4	C3	O12	180.0°	179.7°
C4	C5	C6	H5	180.0°	180.0°
C4	C5	C6	CL13	180.0°	180.0°
C4	C5	C6	C1	0.0°	0.0°
C3	C2	CL14	C1	179.9°	180.0°
C3	C2	C1	C6	0.1°	0.3°
C2	C3	O12	H12	170.6°	90.0°
C3	C2	C1	HA	180.0°	180.0°
O12	C3	C2	CL14	0.1°	0.1°
O12	C3	C2	C1	180.0°	179.9°
CL14	C2	C1	C6	179.9°	179.7°
CL14	C2	C1	HA	0.1°	0.0°
C2	C1	C6	C5	0.1°	0.3°
C2	C1	C6	CL13	179.9°	179.8°
C2	C1	C6	HA	180.0°	179.8°
C5	C6	CL13	C1	180.0°	180.0°
C5	C6	C1	HA	179.9°	180.0°
CL13	C6	C5	H5	0.1°	0.0°
CL13	C6	C1	HA	0.1°	0.0°
C1	C6	C5	H5	180.0°	180.0°

224931

PDB entries from 2024-09-11

PDB statistics

PDBj update info

Contact PDBj

numon